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HTAPP-100-SMP-1

Dyer Lab

60 2

Mar 10, 2022

PMID 9999999

< 1k

Sample name: HTAPP-100-SMP-1
Processing method: single-nucleus RNA-seq (frozen tissue)
Biopsy or resection: resection
Age: 3 yr
Sample site (anatomic site of tissue resection): Adrenal Gland, Right
Primary site: Adrenal
Histologic diagnosis Ganglioneuroblastoma
INSS Stage: 4
INRGSS Stage: M
COG risk stratum: High
MYCN status: non-amplified
ALK mutation status: wild type
Treatment status: chemo-immunotherapy
Methylation group: 1

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runproteinpaint({
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-100-SMP-1/HTAPP-100-SMP-1.json',
        legendimg: {
            name: 'HTAPP-100-SMP-1 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-100-SMP-1/HTAPP-100-SMP-1_infercnv.png',
            height: 800
        },
    }
})

Visualization Code

runproteinpaint({
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-100-SMP-1/HTAPP-100-SMP-1.json',
        legendimg: {
            name: 'HTAPP-100-SMP-1 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-100-SMP-1/HTAPP-100-SMP-1_infercnv.png',
            height: 800
        },
    }
})

HTAPP-100-SMP-1

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Visualization Code