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HTAPP-120-SMP-41

Dyer Lab

60 2

Mar 10, 2022

PMID 99999999

< 1k

Sample name: HTAPP-120-SMP-41
Processing method: single-nucleus RNA-seq (frozen tissue)
Biopsy or resection: resection
Age: 11 mo
Sample site (anatomic site of tissue resection): Paraspinal Mass/mediastinal mass
Primary site: Paraspinal Mass
Histologic diagnosis Neuroblastoma
INSS Stage: 1
INRGSS Stage: L1
COG risk stratum: Low
MYCN status: non-amplified
ALK mutation status: mutant, F1174L
Treatment status: untreated
Methylation group: 2

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runproteinpaint({
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-120-SMP-41/HTAPP-120-SMP-41.json',
        legendimg: {
            name: 'HTAPP-120-SMP-41 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-120-SMP-41/HTAPP-120-SMP-41_infercnv.png',
            height: 800
        },
    }
})

Visualization Code

runproteinpaint({
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-120-SMP-41/HTAPP-120-SMP-41.json',
        legendimg: {
            name: 'HTAPP-120-SMP-41 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-120-SMP-41/HTAPP-120-SMP-41_infercnv.png',
            height: 800
        },
    }
})

HTAPP-120-SMP-41

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Visualization Code