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HTAPP-125-SMP-71

Dyer Lab

60 2

Mar 10, 2022

PMID 99999999

< 1k

Sample name: HTAPP-125-SMP-71
Processing method: single-nucleus RNA-seq (frozen tissue)
Biopsy or resection: resection
Age: 3 yr
Sample site (anatomic site of tissue resection): Spinal Canal
Primary site: Paraspinal Mass
Histologic diagnosis Ganglioneuroblastoma
INSS Stage: 3
INRGSS Stage: L2
COG risk stratum: Intermediate
MYCN status: non-amplified
ALK mutation status: wild type
Treatment status: untreated
Methylation group: 2

Loading Visualization

runproteinpaint({
  	host: 'https://proteinpaint.stjude.org/',
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-125-SMP-71/HTAPP-125-SMP-71.json',
        legendimg: {
            name: 'HTAPP-125-SMP-71 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-125-SMP-71/HTAPP-125-SMP-71_infercnv.png',
            height: 800
        },
    }
})

Visualization Code

runproteinpaint({
  	host: 'https://proteinpaint.stjude.org/',
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-125-SMP-71/HTAPP-125-SMP-71.json',
        legendimg: {
            name: 'HTAPP-125-SMP-71 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-125-SMP-71/HTAPP-125-SMP-71_infercnv.png',
            height: 800
        },
    }
})

HTAPP-125-SMP-71

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Visualization Code