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HTAPP-159-SMP-171

Dyer Lab

60 2

Mar 10, 2022

PMID 99999999

< 1k

Sample name: HTAPP-159-SMP-171
Processing method: single-cell RNA-seq (fresh tissue)
Biopsy or resection: resection
Age: 15 mo
Sample site (anatomic site of tissue resection): Retroperitoneal mass
Primary site: Adrenal
Histologic diagnosis Neuroblastoma
INSS Stage: 4
INRGSS Stage: M
COG risk stratum: High
MYCN status: amplified
ALK mutation status: mutant, F1174C
Treatment status: chemotherapy
Methylation group: 4

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runproteinpaint({
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-159-SMP-171/HTAPP-159-SMP-171.json',
        legendimg: {
            name: 'HTAPP-159-SMP-171 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-159-SMP-171/HTAPP-159-SMP-171_infercnv.png',
            height: 800
        },
    }
})

Visualization Code

runproteinpaint({
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-159-SMP-171/HTAPP-159-SMP-171.json',
        legendimg: {
            name: 'HTAPP-159-SMP-171 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-159-SMP-171/HTAPP-159-SMP-171_infercnv.png',
            height: 800
        },
    }
})

HTAPP-159-SMP-171

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Visualization Code