Visualization Community | St. Jude Cloud

HTAPP-800-SMP-6783

Dyer Lab

60 2

Mar 10, 2022

PMID 99999999

< 1k

Sample name: HTAPP-800-SMP-6783
Processing method: single-nucleus RNA-seq (frozen tissue)
Biopsy or resection: resection
Age: 8 mo
Sample site (anatomic site of tissue resection): Paraspinal Mass
Primary site: Paraspinal Mass
Histologic diagnosis Neuroblastoma
INSS Stage: 2B
INRGSS Stage: unknown
COG risk stratum: Low
MYCN status: non-amplified
ALK mutation status: unknown
Treatment status: unknown
Methylation group: unknown

Loading Visualization

runproteinpaint({
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-800-SMP-6783/HTAPP-800-SMP-6783.json',
        legendimg: {
            name: 'HTAPP-800-SMP-6783 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-800-SMP-6783/HTAPP-800-SMP-6783_infercnv.png',
            height: 800
        },
    }
})

Visualization Code

runproteinpaint({
	holder:visualizationContainer[0],
	genome:'hg38',
    noheader:1,
	singlecell:{
        genome:'hg38',
        jsonfile:'apatel2/HTAPP_NB_visualizer/HTAPP-800-SMP-6783/HTAPP-800-SMP-6783.json',
        legendimg: {
            name: 'HTAPP-800-SMP-6783 CNV png title',
            file: 'apatel2/HTAPP_NB_visualizer/HTAPP-800-SMP-6783/HTAPP-800-SMP-6783_infercnv.png',
            height: 800
        },
    }
})

HTAPP-800-SMP-6783

Read more

Loading Visualization

Visualization Code