Visualization Community | St. Jude Cloud

UMAP: T-ALL Subtypes

Mullighan Lab

Oct 11, 2023

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RNA Sequencing

UMAP scatterplot depicting T-ALL subtypes. Key annotations are listed for each sample and can be seen by hovering over samples. UMAP can be subsetted based on various filters: Subtype, Driver Gene, TCR Rearrangement Classification, Leiden cluster lowres annotated, Leiden cluster highres, Leiden cluster oncogene expression, Gender, ETP_status, Age.

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{
	"genome": "hg38",
	"nobox": true, 
	"noheader": true, 
	"mdssamplescatterplot": {
		"analysisdata": {
			"tabular_data": "x\ty\tID\tSubtype\tGenetic Subtype\tDriver Gene\tDriver Gene annotated\tTCR Rearrangement\tClassification\tLeiden cluster lowres annotated\tLeiden cluster highres\tLeiden cluster oncogene expression\tGender\tETP_status\tAge\n-3.525958676\t-2.137440383\tPARBTF\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\t\t8\n3.740017514\t-2.392970025\tPARCWP\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--SFPQ\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\t\t14\n-1.727709372\t2.044387401\tPARDAU\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2 Intergenic Loss (RAG2)\tTCRG\tIntergenic Loss\tTAL1 DP-like\t19\tOther\tFemale\t\t1\n3.110903363\t-2.687494695\tPARDFP\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA9+\tMale\t\t6\n0.520056109\t0.341181309\tPAREDN\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\t\t4\n4.005582433\t1.440288604\tPAREGZ\tTLX3\tTLX3 Immature\t\t\tNo TCR-R\t\tTLX3\t5\tTLX3+\tFemale\t\t8\n0.521432738\t0.099699766\tPAREWU\tNKX2-5\t\tNKX2-5\tNKX2-5--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTME-enriched\t20\tNKX2-5+\tFemale\t\t2\n2.078600507\t4.753987611\tPARFIH\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\t\t5\n-1.629350741\t4.525304616\tPARFLD\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t12\n-3.121652503\t-1.846000373\tPARFME\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\t\t21\n-2.941824455\t-1.541497886\tPARFWJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\t\t11\n-0.153164406\t-3.771987855\tPARFXJ\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\t\t11\n1.798030953\t-5.525351703\tPARGDC\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tNKX2-1+\tMale\t\t7\n3.669257741\t2.831512034\tPARGFL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t4\n3.58144484\t-3.187594592\tPARGFM\tETP-like\tETV6 ETP-like\tETV6\tETV6--HOXC13-AS\tNo TCR-R\tFusion\tETP-like\t9\tOther\tMale\t\t6\n-4.105228324\t-1.528604209\tPARGHJ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t5\n3.974961381\t-3.090000569\tPARGIR\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--CDK6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\t\t7\n2.332626443\t2.864288152\tPARGPS\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\t\t5\n2.753340106\t-3.622757613\tPARHBI\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tOther\tMale\t\t7\n-2.92887475\t1.268902124\tPARHBT\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRA,TCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\t\t17\n2.827017884\t-2.377266824\tPARHEL\tETP-like\t\t\t\tTCRA,TCRG\t\tETP-like\t6\tHOXA9+\tMale\t\t6\n4.109657388\t1.685343683\tPARHES\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t4\n3.128025632\t2.026811898\tPARHLS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t5\n3.906800847\t2.640027822\tPARHPU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t3\n3.127390008\t-2.439874112\tPARICC\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\t\t5\n3.263993363\t1.583216847\tPARIET\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tNKX2-1+\tMale\t\t5\n-2.273204346\t0.017317575\tPARIFC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 αβ-like\t8\tLMO1+\tMale\t\t16\n1.318203549\t0.596390904\tPARIHY\tTME-enriched\t\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tTME-enriched\t20\tHOXA13+\tFemale\t\t11\n1.718004088\t-5.684849441\tPARIKE\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\t\t10\n3.799546819\t1.848375381\tPARIYD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t8\n0.824718576\t-4.391884982\tPARIZN\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRB,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\t\t10\n-2.743447442\t1.338992656\tPARJAY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tFemale\t\t15\n1.41242681\t4.334873975\tPARJFH\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\t\t19\n-2.671615977\t-1.455340683\tPARJMS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t12\n-4.204951186\t-0.182409182\tPARJNX\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB,TCRD\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tFemale\t\t3\n3.819010358\t1.480172933\tPARJPB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t7\n-4.273161788\t1.204917014\tPARJPL\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t18\tLMO1+\tMale\t\t3\n-0.061413784\t-3.926053225\tPARJSM\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tOther\tFemale\t\t18\n-4.144513268\t0.596960009\tPARJXW\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR, LMO1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\t\t14\n1.829883437\t-5.077009379\tPARJZC\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tFemale\t\t6\n5.477984529\t-2.344158112\tPARKES\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tFemale\tETP\t10\n-3.41898622\t0.690614641\tPARKLK\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO1\tLMO1--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tMale\t\t1\n-3.898605247\t-1.536237657\tPARKRJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, MYC--TCR\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t14\n1.87470017\t4.616448701\tPARLDJ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\t\t17\n-0.750428219\t-0.727807462\tPARLGK\tSTAG2/LMO2\t\tLMO2\tLMO2--TCR, STAG2 (p.E177X;VAF:0.52)\tTCRB\tTCR-R\tRare-Other\t13\tOther\tFemale\t\t2\n-3.59887733\t2.207270444\tPARLHD\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tFemale\t\t2\n-2.143479307\t2.149622024\tPARLIB\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--TCR, RPL10\tTCRB,TCRG\tTCR-R\tTAL1 DP-like\t19\tOther\tFemale\t\t6\n3.113240819\t1.55754\tPARLJA\tTLX3\tTLX3 Immature\tMYB\tMYB--PLAGL1\tTCRB\tFusion\tTLX3\t5\tOther\tMale\t\t8\n3.827507596\t1.604129017\tPARLLD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t6\n3.476593118\t1.446790755\tPARLMX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t3\n-2.027447898\t0.23361832\tPARLST\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tABL2--ZC3HAV1, TAL1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t7\tOther\tMale\t\t9\n-3.360688586\t-2.340107619\tPARMCL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\t\t5\n0.185288529\t0.759346784\tPARMED\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tOther\tMale\t\t7\n-1.654308547\t2.088957847\tPARMFF\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2 enhancer SNV/Indel, RPL10\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t19\tOther\tMale\t\t8\n2.397803884\t3.068212569\tPARMGT\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t9\n-2.594977875\t1.442772806\tPARMIA\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t16\n-3.822895188\t1.195850552\tPARMIH\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t12\n-3.793015857\t-1.432043611\tPARMJA\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t6\n-4.211122413\t-0.043154272\tPARMKK\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\t\t3\n-3.489028354\t-1.128580152\tPARMKM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\t\t1\n-0.055384178\t-4.013719022\tPARMKR\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRB\tFusion\tHOXA9 TCR/MLT10\t22\tHOXA13+\tMale\t\t10\n-3.199535031\t1.352855027\tPARMMV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\t\t6\n4.379965882\t2.499257625\tPARMNL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t17\n-3.331951995\t-1.084929406\tPARMRF\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t5\n4.007368188\t-3.07577151\tPARMSF\tETP-like\tETV6 ETP-like\tETV6\tETV6--FOXO1\tNo TCR-R\tFusion\tETP-like\t9\tOther\tFemale\tETP\t4\n-1.433915306\t0.726448715\tPARMUC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--IGH\tTCRA,TCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\t\t2\n3.182970624\t2.472679198\tPARMWH\tTLX3\tTLX3 Immature\t\t\tNo TCR-R\t\tTLX3\t4\tTLX3+\tFemale\t\t20\n-3.171633263\t-1.112425625\tPARNBN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2--TCR\tNo TCR-R\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\t\t10\n3.459999185\t1.716880978\tPARNEH\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t4\n3.394528489\t-3.578235566\tPARNIK\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR, HDAC9--CUX1\tTCRG\tTCR-R\tETP-like\t9\tHOXA13+\tMale\t\t16\n3.884319406\t-3.619193494\tPARNJB\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1, MED12\tTCRG,TCRD\tFusion\tETP-like\t9\tHOXA13+\tFemale\tETP\t22\n-4.32233705\t-1.575219452\tPARNMV\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\t\t9\n0.061544876\t0.398080916\tPARNNW\tTME-enriched\t\tRUNX1\tRUNX1 germline deletion\tTCRB\tGermline Deletion\tTME-enriched\t20\tNKX2-1+\tMale\t\t17\n3.2389885\t-2.721088588\tPARNPX\tETP-like\t\t\t\tTCRD\t\tETP-like\t9\tHOXA13+\tMale\t\t19\n-1.926598151\t4.957421125\tPARNSP\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t6\n-3.587534089\t-2.157629191\tPARNWJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t6\n-3.57148232\t0.0052858\tPARNXJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\t\t4\n-2.358279963\t-0.51913765\tPARPCK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2--TCR, JAK2--TPR, LMO2 Intergenic Loss (intergenic)\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t7\tOther\tMale\t\t14\n-1.067844619\t4.300611795\tPARPET\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRA,TCRG\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tFemale\t\t4\n2.746739249\t-4.30407828\tPARPGD\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tETP-like\t14\tHOXA9+\tMale\t\t9\n-3.547946591\t-2.055104434\tPARPHB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t1\n-2.046610732\t2.006144822\tPARPUL\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tOther\tMale\t\t2\n3.914547544\t2.377008021\tPARPYJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tFemale\t\t7\n2.9302455\t2.742583097\tPARPYK\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t6\n3.908736806\t-3.27440828\tPARRJR\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\t\t12\n-3.958756824\t-0.511760413\tPARRKK\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--TCR, LMO2 enhancer gain\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\t\t8\n2.859759908\t-2.813869655\tPARRWT\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tNKX2-5+\tMale\t\t11\n5.370133023\t-2.460191667\tPARSET\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tMale\t\t10\n-3.523152966\t-0.82724744\tPARSJG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\t\t11\n-2.040443141\t0.349082172\tPARSLA\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LCK--KHDRBS1\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\t\t2\n-3.19526567\t1.415786565\tPARSNX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tMale\t\t13\n-3.509674449\t0.651752353\tPARSUU\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRA,TCRB,TCRG\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\t\t3\n1.847763162\t4.39333278\tPARTBP\tTLX1\t\tTLX1\tTLX1--TCR\tTCRA,TCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\t\t5\n3.673958402\t-4.525918185\tPARTFR\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--HNRNPH1\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tFemale\t\t11\n3.191459279\t-3.231175124\tPARTLX\tETP-like\tHOXA13 ETP-like\tETV6\tETV6 SV\tNo TCR-R\tIntragenic Loss\tETP-like\t9\tHOXA13+\tFemale\t\t10\n5.220864873\t-2.500455558\tPARTLY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--SATB1\tNo TCR-R\tTranslocation\tETP-like\t9\tTLX3+\tMale\tETP\t12\n3.339457135\t2.884613336\tPARTPW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t15\n2.863631349\t-4.008847176\tPARTRH\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1\tTCRG\tFusion\tETP-like\t14\tHOXA13+\tFemale\tETP\t9\n3.823433499\t2.767038405\tPARTUK\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t6\n0.613636117\t0.722579897\tPARTUZ\tTME-enriched\t\t\t\tTCRD\t\tTME-enriched\t20\tOther\tMale\t\t15\n-3.787958045\t0.449337334\tPARUCV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCF7, LMO2--TCF7\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\t\t8\n4.312742333\t2.384897531\tPARUEU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t5\n3.5809413\t-4.195526301\tPARUKW\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--NAP1L1\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA13+\tFemale\t\t9\n3.563206773\t1.352701128\tPARULB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRG\tTCR-R\tTLX3\t5\tTLX3+\tMale\t\t17\n-1.867321212\t0.528483213\tPARVDS\tTAL1 DP-like\tTAL1 DP-like Other\tMYC\tMYC--TCR, TAL1 enhancer gain\tTCRA,TCRB,TCRG\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tMale\t\t15\n-0.807990063\t-0.729689419\tPARVEI\tSTAG2/LMO2\t\tLMO2\tLMO2 enhancer SNV/Indel, STAG2 (intronic_Indel;VAF:0.3)\tTCRG,TCRD\tIntergenic SNV/Indel\tRare-Other\t13\tOther\tFemale\t\t3\n-2.916840692\t-1.99009329\tPARVHY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t15\n-2.267027039\t2.119993032\tPARVMR\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1 enhancer gain, RPL10\tTCRB\tEnhancer Gain\tTAL1 DP-like\t19\tLMO1+\tMale\t\t4\n4.108444314\t1.664021433\tPARVRF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, ABL1--NPAT\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t5\n-0.930882324\t4.240035356\tPARVSC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--IGH, MYB--TCR\tTCRB\tIntragenic INV\tNKX2-1\t26\tNKX2-1+\tFemale\t\t1\n1.888235192\t-4.548440635\tPARWDH\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRB,TCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\t\t2\n-3.88398685\t-0.008112668\tPARWDM\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\t\t15\n0.709133606\t-4.279505431\tPARWID\tNUP98\tNUP98\tNUP98\tNUP98--CCDC28A\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\t\t19\n3.699018102\t-3.51740998\tPARWKM\tETP-like\tRare ETP-like\tHOXB13\tHOXB13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tOther\tFemale\tETP\t13\n3.418156724\t-2.764052331\tPARWLB\tETP-like\tETV6 ETP-like\tETV6\tETV6--LINC01252, LMO2-RAG-MS4A2 Intergenic Inversion\tTCRA,TCRG\tTranslocation\tETP-like\t9\tHOXA13+\tMale\t\t19\n-2.978230734\t-1.742802679\tPARWLP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t7\n3.605205636\t-2.426401793\tPARWMF\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--NONO\tTCRG,TCRD\tFusion\tETP-like\t6\tHOXA9+\tMale\t\t11\n-3.163591404\t1.461980165\tPARWNW\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\t\t11\n4.451989751\t2.464414657\tPARWTC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t8\n0.844473224\t-4.404668509\tPARWTI\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\t\t4\n3.82440434\t-2.311058938\tPARXAH\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tLOSS:ZFP36L2\tTCRD\tIntragenic Loss\tETP-like\t6\tOther\tMale\t\t15\n-4.367391963\t-1.118143737\tPARXBJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\t\t3\n2.60931788\t-3.859299361\tPARXBR\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\t\t14\n4.311144452\t1.613900483\tPARXCZ\tETP-like\tMED12 ETP-like\tMED12\tMED12, MSX2--BCL11B enhancer\tTCRG,TCRD\tStop/Frameshift/Splicing\tTLX3\t5\tOther\tMale\t\t15\n-1.670447875\t4.329137624\tPARXDJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t7\n-4.002845187\t1.045618952\tPARXFY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t10\n-2.990684886\t-1.410332739\tPARXHT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TCR\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tOther\tFemale\t\t13\n1.946825366\t4.686654389\tPARXLS\tTLX1\t\t\t\tNo TCR-R\t\tTLX1\t21\tTLX1+\tMale\t\t4\n1.410074811\t4.32312423\tPARXMV\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tNKX2-5+\tMale\t\t12\n0.918854575\t0.683169365\tPARXNC\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTME-enriched\t20\tTLX3+\tFemale\t\t6\n3.531361203\t-4.578592002\tPARXNE\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t15\n-2.382249255\t0.991116345\tPARXNI\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t2\tTAL2+\tFemale\t\t5\n2.555513959\t-2.61594361\tPARXPK\tETP-like\tMED12 ETP-like\tMED12\tMED12\tTCRG,TCRD\tStop/Frameshift/Splicing\tRare-Other\t1\tOther\tFemale\t\t4\n-4.294844766\t1.874380291\tPARXPZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\t\t14\n4.410365682\t2.339883149\tPARXTW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRA,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\t\t7\n-4.446770329\t-1.327048718\tPARXVS\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\t\t11\n-4.102312703\t-0.091887004\tPARXYI\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\t\t2\n1.977918963\t4.753533662\tPARYGI\tTLX1\t\t\t\tNo TCR-R\t\tTLX1\t21\tTLX1+\tMale\t\t5\n-1.645381738\t4.256379903\tPARYGJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t15\n-3.948689361\t2.186093867\tPARYHC\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2 enhancer SNV/Indel, LEF1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\t\t1\n0.970672231\t0.245443285\tPARYJG\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--GTPBP8\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\t\t4\n4.069561582\t1.795336545\tPARYMD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t6\n-2.947807331\t-1.976608335\tPASFHR\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t14\n-2.457701106\t1.399910033\tPASFKA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t8\tOther\tMale\t\t12\n4.13348208\t-2.80795902\tPASFLK\tETP-like\tETV6 ETP-like\tETV6\tLOSS:ETV6\tNo TCR-R\tIntragenic Loss\tETP-like\t25\tOther\tMale\tETP\t12\n-3.681082625\t-0.822299957\tPASFSI\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\t\t5\n-1.299697515\t4.033996881\tPASGDZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\t\t16\n-1.178286802\t4.143340409\tPASGEC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tFemale\t\t13\n3.400049787\t-2.567641675\tPASGFH\tETP-like\tRare ETP-like\tBCL11B\tBCL11B--GRK3\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tMale\t\t17\n-3.769002576\t-0.276518315\tPASGKL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\t\t1\n-1.383758549\t0.892314494\tPASGMR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\t\t14\n-1.995905001\t0.627546609\tPASGRD\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, MYC--MIR181A1HG\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tFemale\t\t4\n3.434176068\t-2.365510642\tPASGRU\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRA,TCRG\tStop/Frameshift/Splicing\tETP-like\t6\tNKX2-5+\tFemale\tETP\t15\n3.328617196\t1.860005558\tPASGSR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t5\n3.568671804\t-3.314490973\tPASGUF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\t\t13\n-1.778437395\t4.802608312\tPASGUH\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t6\n-3.625947614\t1.355555356\tPASGUX\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t7\n3.105457883\t-3.392140328\tPASGZY\tETP-like\tETV6 ETP-like\tETV6\tETV6--LINC01470\tNo TCR-R\tTranslocation\tETP-like\t9\tOther\tFemale\t\t6\n-0.154469867\t-3.971559464\tPASHDV\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tNo TCR-R\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\t\t11\n3.665158372\t-3.305510461\tPASHGM\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\t\t11\n2.639783483\t-4.193273246\tPASHIL\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tTCRB\tFusion\tETP-like\t16\tHOXA9+\tFemale\tETP\t11\n3.130832295\t2.868290008\tPASHNK\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t6\n2.58635078\t1.898622573\tPASHPD\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t5\tTLX3+\tMale\t\t8\n-3.713902612\t0.641522945\tPASHUP\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tNo TCR-R\t\tTAL1 DP-like\t18\tOther\tMale\t\t9\n-4.25557055\t0.972917378\tPASHXL\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\t\t13\n-1.20181804\t3.725408137\tPASHYJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tNo TCR-R\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\t\t2\n-3.434272428\t-1.588758289\tPASHZK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t12\n3.640250306\t-3.043444335\tPASIFP\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--ETV6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\t\t1\n2.97530232\t2.759717763\tPASIIF\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, IL7R--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\t\t7\n3.490577321\t2.506576837\tPASIIY\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t5\n-3.005931277\t-1.937178671\tPASIJX\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t9\n-4.530544181\t-0.434969484\tPASILU\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\t\t6\n-4.273112674\t1.85695082\tPASILW\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, LYL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tFemale\t\t12\n-4.275277753\t2.076217473\tPASINX\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, LYL1 enhancer gain\tTCRG,TCRD\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\t\t11\n-1.99999531\t4.61556989\tPASIPN\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB,TCRG\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\t\t5\n-3.802393575\t1.946057737\tPASIWE\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\t\t4\n3.118990521\t2.420347751\tPASJFJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t6\n-1.278051343\t4.197521031\tPASJGV\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\t\t15\n3.365686517\t-4.065975367\tPASJHT\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--NAP1L1\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tFemale\t\t29\n2.280967574\t-4.442427813\tPASJIY\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--PICALM\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tMale\t\t12\n5.49245749\t-2.313430964\tPASJJR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CASC15\tNo TCR-R\tTranslocation\tBCL11B\t25\tTLX3+\tMale\tETP\t14\n2.026276689\t3.156991542\tPASJLN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t10\n-1.666964878\t4.15945226\tPASJMC\tNKX2-1\tNKX2-1 TCR\t\t\tTCRB\t\tNKX2-1\t19\tNKX2-1+\tMale\t\t3\n-4.477808375\t-1.2219581\tPASJXW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tNo TCR-R\t\tTAL1 αβ-like\t11\tOther\tFemale\t\t3\n5.445354085\t-2.380467355\tPASJYI\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\t\t14\n-4.046153922\t2.065843404\tPASKAD\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tFemale\t\t10\n1.952303033\t-5.496273696\tPASKBB\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\t\t12\n1.936371903\t4.685892404\tPASKCL\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB,TCRG\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\t\t12\n-4.051838775\t-1.281448543\tPASKGG\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n-4.510823388\t-0.283677816\tPASKIC\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t11\n3.144849401\t-2.596750438\tPASKLK\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t10\n-4.14914598\t1.98059994\tPASKLU\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t14\n3.388226132\t-2.002098977\tPASKMG\tETP-like\tRare ETP-like\tBCL11B\tBCL11B-R\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tFemale\tETP\t19\n-1.744322915\t2.002692521\tPASKRN\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t5\n3.157189946\t-2.117386996\tPASKSY\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t9\n-4.185752768\t-0.638630151\tPASKTG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n2.631453853\t2.982886851\tPASKVH\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tNKX2-1+\tFemale\tNon-ETP\t6\n2.433053355\t3.250582278\tPASKWG\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t11\n-4.341803689\t1.663859189\tPASKXA\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t15\n2.541727405\t3.00631696\tPASKXN\tTLX3\tTLX3 DP-like\t\t\tNo TCR-R\t\tTLX3\t24\tTLX3+\tMale\t\t9\n-4.371956487\t-1.170717656\tPASKZU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t2\n-3.964573522\t0.151017294\tPASLAB\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t4\n4.436504464\t2.217125953\tPASLBB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRA,TCRB,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n3.208334546\t2.577819884\tPASLFT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t19\n-4.215504546\t1.430376232\tPASLPH\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--CD1E\tTCRB,TCRG\tIntergenic INV\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-1.982320685\t4.88722545\tPASLXY\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRA,TCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t14\n-3.54531445\t-1.524633228\tPASMHF\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tLMO1 enhancer SNV/Indel, TAL1 enhancer SNV/Indel\tTCRA\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t12\n-4.399886746\t-1.143890082\tPASMIC\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t13\n-3.527627845\t1.768809021\tPASMNV\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--CSTF3\tTCRB\tTranslocation\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-4.496935029\t-0.246983915\tPASNEH\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n4.045154672\t-2.932875335\tPASNLF\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t9\tOther\tMale\tETP\t16\n3.80859242\t1.418384374\tPASNNJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tETP\t12\n2.246668916\t-3.668015897\tPASNNM\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t11\n4.082888227\t-3.190902173\tPASNTZ\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t7\n0.2394136\t-0.010339252\tPASNWP\tTME-enriched\t\tTLX1\tTLX1--RPP30\tNo TCR-R\tIntergenic Loss\tTME-enriched\t20\tHOXA13+\tMale\tETP\t6\n3.553622346\t-3.669604241\tPASNXS\tETP-like\t\t\t\tTCRB,TCRG\t\tETP-like\t9\tHOXA9+\tFemale\tNear-ETP\t7\n-3.225762982\t1.32040006\tPASPBU\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t15\n-3.405853171\t-0.423370629\tPASPDL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t6\n-3.88787951\t1.712590159\tPASPDS\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t10\n-3.645303388\t2.144098819\tPASPJR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t5\n2.370042424\t-4.507454574\tPASPJU\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tFemale\tNon-ETP\t3\n-3.119896431\t-0.87875241\tPASPLG\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t7\tOther\tFemale\tNon-ETP\t7\n-3.289226909\t1.348209441\tPASPLW\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL\tTCRB,TCRD\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t3\n-4.116225381\t1.605578483\tPASPNI\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t7\n-2.825540919\t1.520524681\tPASPNW\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n4.440900426\t2.269109071\tPASPPN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t12\n-3.537191052\t-0.66472721\tPASRAF\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, BCR--ABL1\tTCRA,TCRB,TCRG\tFusion\tTAL1 αβ-like\t7\tOther\tMale\tNon-ETP\t4\n1.753185849\t-5.825839221\tPASRCV\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB,TCRG\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t3\n1.439255576\t4.081914723\tPASRKS\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion, MYB--TCR, ABL1--FXR1\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t11\n4.181595902\t-3.397417008\tPASRLP\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t5\n-1.818238277\t4.901756585\tPASRMM\tNKX2-1\tNKX2-1 Other\tNKX2-1\tGAIN:NKX2-1\tTCRG,TCRD\tGain\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t4\n-1.64110725\t2.188648522\tPASRNF\tTAL1 DP-like\tTAL1 DP-like RPL10\t\t\tTCRB\t\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t2\n-1.585592259\t0.498428703\tPASRPK\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t14\n-1.844457943\t4.825737298\tPASRPV\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 enhancer gain\tTCRB\tEnhancer Gain\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-1.973761697\t0.459170789\tPASRSE\tTAL1 DP-like\tTAL1 DP-like Other\tJAK2\tJAK2--CD99\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t2\n0.286097984\t0.368472666\tPASRSP\tTME-enriched\t\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTME-enriched\t20\tOther\tMale\tNon-ETP\t9\n3.311713319\t1.899353207\tPASRTM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--SATB1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t10\n-2.702238579\t1.562170089\tPASRUK\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--LEF1, TAL1--ADD3\tTCRB\tFusion\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t2\n0.678717475\t0.38754043\tPASRXG\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t6\n-4.068809171\t1.584169567\tPASSEF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t4\n3.751002412\t-2.748174607\tPASSFA\tETP-like\tETV6 ETP-like\tETV6\tETV6--FOXO1\tNo TCR-R\tTranslocation\tETP-like\t9\tOther\tFemale\tNear-ETP\t3\n3.190997224\t2.382981599\tPASSGL\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t9\n1.825597386\t4.445750058\tPASSHC\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t15\n1.693488221\t-5.830524623\tPASSPP\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t9\n-4.4152564\t-1.14977461\tPASSRP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, USP7--TCR\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t4\n-3.556838889\t1.649024785\tPASSSR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t7\n-4.03063168\t1.342943848\tPASSZA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t14\n-3.213296552\t1.304845036\tPASTCH\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t10\n3.818872075\t1.263602555\tPASTDU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t8\n2.294054847\t3.215074599\tPASTHE\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t6\n-3.365655799\t-1.674884617\tPASTJN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-1.859443266\t2.142688573\tPASTLI\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2 enhancer SNV/Indel, RPL10\tTCRB,TCRD\tIntergenic SNV/Indel\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t14\n3.747713189\t1.959823192\tPASTLP\tTLX3\tTLX3 Immature\t\t\tNo TCR-R\t\tTLX3\t5\tTLX3+\tMale\t\t9\n1.765009027\t4.485628903\tPASTLR\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n0.591903548\t0.748023451\tPASTPT\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer, NCOR1--NFIA\tTCRA\tTranslocation\tTME-enriched\t20\tTLX3+\tFemale\tNon-ETP\t4\n-4.11863627\t1.151035488\tPASTXU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tNo TCR-R\tFusion\tTAL1 DP-like\t17\tOther\tFemale\t\t12\n3.989677529\t2.475391925\tPASTZP\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t8\n3.892365556\t-3.019683062\tPASUAI\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR, ETV6--CTNNB1\tTCRG\tTCR-R\tETP-like\t9\tHOXA13+\tFemale\tETP\t7\n2.997939687\t2.598819793\tPASUDN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t24\tNKX2-5+\tMale\tNon-ETP\t6\n2.596925597\t3.037553609\tPASUGC\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t9\n-2.193504174\t1.415381611\tPASUHS\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 Intergenic Loss (RAG2)\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t2\n-1.814848382\t4.8080104\tPASUIN\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t13\n-3.587789197\t1.44242102\tPASUNM\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t16\n-4.028735537\t1.727888406\tPASUSV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t8\n0.258713942\t0.050283656\tPASUWN\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t15\n0.948105197\t-4.507103621\tPASUZU\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t14\n-1.730568964\t2.149076045\tPASVIN\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t7\n-4.139369388\t-1.094918787\tPASVJM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tABL1\tABL1--RANBP2\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n-3.591834207\t-1.621878802\tPASVKC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-3.96918859\t1.018025578\tPASVLD\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-4.052218814\t-0.555284023\tPASVPZ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n-4.311335463\t0.344669015\tPASVRC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer gain, TAL1 enhancer gain\tTCRA,TCRB\tEnhancer Gain\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-1.155311086\t0.656439007\tPASVVA\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t10\n0.061314802\t0.31820041\tPASVVG\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tNKX2-1+\tMale\tNon-ETP\t12\n-3.190740366\t2.028036178\tPASVWH\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t15\n-2.882206459\t1.167373837\tPASVYP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t4\n-3.263089318\t-1.027636229\tPASVZJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t2\n-4.353651662\t0.646232844\tPASWBJ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t14\n2.715925555\t2.814493716\tPASWBV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-3.661919732\t-2.06910032\tPASWBZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TRABD2B, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tTranslocation\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t6\n-4.182226319\t0.743781031\tPASWED\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t7\n3.430747609\t-2.31249684\tPASWFN\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tETP\t11\n-2.352376242\t-1.806137382\tPASWLV\tLMO2 γδ-like\t\tLMO2\tLMO2 enhancer SNV/Indel\tTCRG,TCRD\tIntergenic SNV/Indel\tTAL1 αβ-like\t1\tOther\tMale\tNon-ETP\t5\n0.677955728\t-4.276573836\tPASWNU\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t15\n-4.239092965\t0.670290351\tPASWSR\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t3\n3.669140916\t2.234250844\tPASWWR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t8\n2.216905932\t-4.854599654\tPASWWT\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tFemale\tNear-ETP\t1\n-1.52124678\t1.934423745\tPASWXB\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t9\n0.919468741\t-4.423893153\tPASWXZ\tMLLT10\tMLLT10\tMLLT10\tKMT2A--MLLT10\tNo TCR-R\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\t\t7\n-4.080614705\t2.195649684\tPASWYU\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tRUNX1\tRUNX1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t5\n-0.948424954\t4.073470891\tPASWZJ\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t5\n1.868337016\t-5.684399783\tPASXAL\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t10\n-3.574899096\t-1.311152994\tPASXAY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t13\n3.306046109\t1.595070065\tPASXFB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t7\n2.59450994\t3.060702384\tPASXIL\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t8\n3.206532102\t-2.289149224\tPASXLM\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t6\n3.605623345\t2.043198646\tPASXLT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t4\n1.831053119\t4.455537141\tPASXLZ\tTLX1\t\tTLX1\tTLX1 Intergenic Loss, PECAM1--TCR\tTCRG\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n-3.509169002\t1.507947624\tPASXMF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRA,TCRB\tEnhancer Gain\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t10\n3.790154557\t1.975047649\tPASXPD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t16\n-3.981366296\t0.892377616\tPASXSI\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB,TCRG\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n-3.770714898\t0.42848453\tPASXUC\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNear-ETP\t6\n0.977757793\t-4.522962748\tPASXUL\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t11\n-4.229580541\t-1.125674188\tPASXUU\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t7\n4.10667048\t2.798714936\tPASXVR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t3\n-3.857131619\t-0.956457495\tPASYAJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n3.268621545\t-2.497056901\tPASYCN\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tGAIN:ZFP36L2, LOSS:CDK6\tTCRA,TCRG\tGain\tETP-like\t6\tOther\tMale\tNon-ETP\t10\n-4.364263196\t-1.516890823\tPASYHN\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t17\n4.349817376\t2.437466443\tPASYIS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t8\n3.005886655\t-2.222918212\tPASYKJ\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t7\n3.630917649\t1.108901084\tPASYKT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t5\tTLX3+\tMale\tNear-ETP\t12\n-1.73213901\t4.36344272\tPASYNX\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 Intergenic Loss\tTCRB\tIntergenic Loss\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t2\n-4.183857579\t2.149033845\tPASYSJ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t14\n-2.375471611\t-0.800554633\tPASYSM\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t8\tOther\tMale\tNon-ETP\t15\n1.620133262\t-5.856841266\tPASYSW\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t16\n-2.156612415\t0.633386791\tPASYVU\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, MYC--TCR, TAL1--CCDC102B\tTCRB\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t7\n-4.267482896\t1.80130893\tPASYWF\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t5\n-3.657941956\t0.838784755\tPASZAY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t19\n1.968954425\t4.865027726\tPASZAZ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t15\n0.692638497\t0.433900506\tPASZCF\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t10\n1.471336465\t4.570557893\tPASZEW\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t7\n1.344274383\t-4.013061463\tPASZGL\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t16\tHOXA9+\tFemale\tNon-ETP\t6\n3.41782866\t1.169977367\tPASZIY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t14\n-2.014100332\t-1.170204102\tPASZJW\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--CT45A2\tTCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\tNear-ETP\t29\n3.775902848\t-2.87849754\tPASZKM\tETP-like\tETV6 ETP-like\tETV6\tETV6--ARNT\tNo TCR-R\tFusion\tETP-like\t6\tOther\tFemale\tETP\t3\n2.615538459\t-4.572177588\tPASZMC\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tETP-like\t14\tHOXA9+\tFemale\tETP\t7\n2.067211967\t4.690061391\tPASZPP\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-2.943686266\t1.808571518\tPASZTU\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t12\n2.760685306\t2.896480859\tPATADU\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n1.291713815\t-0.970390081\tPATAHP\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRA,TCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t12\n2.393835645\t-4.081778705\tPATAIE\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t16\n-2.798729796\t1.44562918\tPATALF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--LRRC2, HLF--NCOR1\tTCRB\tFusion\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t12\n2.622883182\t-3.766980111\tPATALJ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t12\n-1.650001008\t2.020084918\tPATASK\tTAL1 DP-like\tTAL1 DP-like RPL10\tMYB\tMYB--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t3\n-3.421205659\t1.516421617\tPATATZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t11\n-1.262570631\t1.061657131\tPATAUC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--RAG1\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tFemale\tNon-ETP\t3\n3.073021989\t2.226805986\tPATAUZ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t11\n-1.22926184\t1.289452494\tPATAXS\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tNo TCR-R\t\tTAL1 DP-like\t19\tHOXA9+\tMale\tNon-ETP\t1\n0.708315353\t-4.32743901\tPATAYT\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t5\n0.65800653\t-4.247286021\tPATBCV\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNear-ETP\t7\n1.947047095\t-5.421898066\tPATBDJ\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t15\n-2.625021715\t1.348123134\tPATBDK\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRA,TCRB\tFusion\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t7\n3.982311349\t-2.783085763\tPATBGC\tETP-like\tETV6 ETP-like\tETV6\tETV6--PDGFRA, TAL1 enhancer SNV/Indel\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tFemale\tETP\t10\n-3.978907008\t1.343380511\tPATBGH\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t11\n1.600863318\t-5.891297042\tPATBNT\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t13\n-2.718046803\t0.523413897\tPATBPY\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, MYC--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t15\n0.846857648\t-4.390279471\tPATBRV\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t8\n-2.564462323\t-0.152131594\tPATBTX\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LOSS:LEF1\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n3.589931588\t-2.448220193\tPATBVE\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--SFPQ\tTCRG,TCRD\tFusion\tETP-like\t6\tOther\tMale\tETP\t14\n-3.696676154\t-1.074349939\tPATBVS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1--CTNND2\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t13\n2.025477271\t4.557938874\tPATBYK\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t16\n2.927214246\t3.000760377\tPATCDZ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t13\n0.087786179\t0.238909543\tPATCEL\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t4\n2.429108958\t2.919477523\tPATCGN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t16\n1.119235377\t-4.16284722\tPATCGT\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tOther\tMale\tNon-ETP\t7\n3.230475049\t-2.523445784\tPATCKV\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA9+\tMale\tETP\t14\n-3.708791394\t-0.982493936\tPATCML\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, PDGFRB--SPDL1\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t9\n2.721123557\t-2.493301331\tPATCNG\tETP-like\tMED12 ETP-like\tMED12\tMED12\tTCRA\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t12\n1.771532159\t-5.786025226\tPATCNI\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t4\n3.544907193\t-3.540992915\tPATCTD\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--CDK6\tNo TCR-R\tFusion\tETP-like\t9\tNKX2-1+\tFemale\tNear-ETP\t7\n-0.976877574\t4.246093572\tPATCTL\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB,TCRD\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t1\n-4.500134845\t1.994329274\tPATCTR\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, LYL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t13\n-3.27200212\t1.419545234\tPATCUK\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tNo TCR-R\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t12\n-3.8323914\t-1.772946536\tPATCWW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n-2.941964645\t1.651051701\tPATCZN\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tFemale\tNon-ETP\t4\n-3.844078202\t1.128572286\tPATDBC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t14\n-4.389210362\t-1.119635999\tPATDBU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t9\n-4.168930669\t0.919030548\tPATDDZ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel, TAL1 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-3.539984364\t-1.361193478\tPATDEK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n0.86012588\t-4.446738421\tPATDFE\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t5\n-1.809743602\t4.734179318\tPATDGZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t2\n0.508060436\t-4.253384292\tPATDKT\tMLLT10\t\t\t\tTCRB\t\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t22\n1.907231193\t4.45826751\tPATDLG\tTLX1\t\tTLX1\tTLX1--TCR\tTCRA,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t11\n4.079464536\t2.067104638\tPATDMN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t6\n2.368830781\t-3.924781262\tPATDRC\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t6\n0.833733659\t0.576160789\tPATDTL\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tNo TCR-R\tTranslocation\tTME-enriched\t20\tOther\tMale\tNon-ETP\t11\n-4.34645452\t2.210600436\tPATDTN\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t1\n-4.049426694\t0.853941858\tPATEAK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, CCND3--ARID5B\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t17\n-1.026411374\t4.236308396\tPATEBX\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t16\n-2.288671513\t0.358221293\tPATEFF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--DHX9\tTCRB\tIntergenic INV\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t6\n-4.065474172\t-1.015049934\tPATEHZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t8\n-3.758196492\t-1.704933822\tPATEIT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 enhancer SNV/Indel\tNo TCR-R\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tFemale\t\t9\n3.713335137\t2.922822059\tPATELJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t4\n3.303087812\t-3.953391015\tPATEMI\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--LNP1\tTCRD\tFusion\tETP-like\t27\tHOXA13+\tFemale\tNear-ETP\t17\n-4.289764066\t-0.9184345\tPATENL\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tMale\tNear-ETP\t3\n-0.774265308\t-0.720893502\tPATETG\tSTAG2/LMO2\t\tLMO2\tLMO2--STAG2\tTCRB\tTranslocation\tRare-Other\t13\tOther\tFemale\tNon-ETP\t1\n2.571924787\t-3.755531489\tPATEUW\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNear-ETP\t7\n4.372698407\t2.009880603\tPATEVG\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t12\n-0.42266192\t0.170529694\tPATEVL\tNKX2-5\t\tNKX2-5\tNKX2-5--BCL11B enhancer\tTCRB\tTranslocation\tRare-Other\t1\tNKX2-5+\tMale\tNon-ETP\t3\n-3.63262095\t-1.69901818\tPATEYS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, RAG2 inversion\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n-3.844813962\t-0.262314274\tPATFAD\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t16\n1.658347945\t-5.876705825\tPATFCV\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNear-ETP\t15\n3.015177827\t-2.499811828\tPATFGZ\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t8\n1.907281976\t4.16061622\tPATFJD\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t2\n-4.345148463\t-1.47584325\tPATFJG\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO1\tLMO1--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tFemale\tNon-ETP\t15\n-4.005140204\t1.973834098\tPATFJP\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t8\n3.631167035\t-4.621883571\tPATFLR\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--TRA\tTCRA\tFusion\tETP-like\t27\tHOXA9+\tMale\tNear-ETP\t12\n0.445225697\t0.697458566\tPATFMG\tTME-enriched\t\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tOther\tMale\tNon-ETP\t14\n-3.899952788\t2.149777949\tPATFPU\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--IGH\tTCRB\tTranslocation\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t4\n5.419366937\t-2.388230025\tPATFRM\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tLMO1+\tMale\tETP\t18\n-3.424157042\t-2.267340838\tPATFUP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t17\n1.880902867\t4.434038938\tPATFVG\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n4.024806123\t-3.381267726\tPATFWF\tETP-like\tRare ETP-like\tHOXB13\tHOXB13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tOther\tMale\tETP\t17\n-1.375288118\t0.725977302\tPATFWZ\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t17\n1.830525498\t4.388004602\tPATFXN\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t7\n1.650125604\t4.226609529\tPATFYZ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tNKX2-1+\tMale\tNon-ETP\t15\n1.852791886\t4.902111352\tPATGBY\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t21\n-2.905092139\t1.573604644\tPATGKE\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t11\n3.834913354\t-3.521589457\tPATGLD\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TENM1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t12\n3.877323728\t2.549622596\tPATGLV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t6\n3.652434926\t-4.516117751\tPATGMJ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t4\n-2.446029921\t1.4572168\tPATGMP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t10\n4.062475305\t1.345536769\tPATGMS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t15\n-3.636743207\t-0.896903753\tPATGVD\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t2\n3.333545308\t1.631626428\tPATGVX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t7\n4.121310811\t-3.413878381\tPATGWP\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t14\n3.675417047\t1.562423409\tPATGXS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t13\n1.979654174\t-5.362257182\tPATGYH\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA13+\tMale\tETP\t16\n3.940857987\t-3.433910787\tPATGZA\tETP-like\tETV6 ETP-like\tETV6\tETV6--CTNNB1\tTCRG\tFusion\tETP-like\t9\tHOXA13+\tFemale\t\t14\n4.251016717\t1.710812867\tPATHAA\tTLX1\t\tTLX1\tTLX1--TCR\tTCRA,TCRG\tTranslocation\tTLX3\t4\tTLX1+\tMale\tNon-ETP\t9\n3.165813546\t-4.042682349\tPATHBG\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1\tTCRG\tFusion\tETP-like\t27\tHOXA13+\tFemale\tETP\t2\n3.305622678\t-4.095015227\tPATHEZ\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tNear-ETP\t11\n-1.881722589\t4.893310369\tPATHFE\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t11\n1.269712071\t-1.025677144\tPATHGY\tSPI1\t\tSPI1\tSPI1--STMN1\tTCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t3\n3.910207849\t-3.565387427\tPATHJF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--SOX4\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tETP\t10\n3.81571732\t-3.282441079\tPATHNI\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tETP\t9\n2.382541995\t2.913136542\tPATHNN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t7\n-3.403945346\t-1.450966298\tPATHRE\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t11\n-3.885951657\t1.992009461\tPATHRF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tTAL2+\tMale\tNon-ETP\t5\n3.555073361\t2.20615989\tPATHSJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t6\n-3.576995988\t-0.787520527\tPATHSL\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t14\n-1.660057206\t4.305092156\tPATHSV\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 Intergenic Loss, ABL1--RANBP2\tTCRB\tIntergenic Loss\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t6\n4.369905572\t2.250109971\tPATHWV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t8\n1.984437327\t-5.51002711\tPATIBE\tKMT2A\tKMT2A\tKMT2A\tKMT2A--TRA\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t11\n3.841062646\t-2.286550223\tPATIBS\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t6\tOther\tFemale\tNon-ETP\t7\n3.380088429\t1.242945612\tPATIFA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--RUNX1, RUNX1--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t5\tTLX3+\tMale\tETP\t23\n2.36349545\t-3.428762137\tPATIFI\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tETP-like\t16\tOther\tFemale\tNon-ETP\t6\n-2.425185699\t1.597538651\tPATIHV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2 Intergenic Loss (RAG2)\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t8\n-3.103919048\t-2.072781979\tPATIKN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t1\n4.272342305\t2.47245437\tPATINY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t14\n2.50434051\t-4.656933963\tPATIPB\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tFemale\tETP\t4\n5.395516973\t-2.431478202\tPATISN\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t12\n2.653017383\t2.904201329\tPATISS\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t9\n-0.215534348\t-3.865782439\tPATITB\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t15\n1.887041431\t4.876993478\tPATITY\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t8\n-3.712762732\t-0.369154244\tPATIWP\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t13\n2.482813697\t-4.025961816\tPATIYA\tETP-like\tRare ETP-like\tMLLT6\tMLLT6--XPO1\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t9\n3.182911019\t2.194951594\tPATJBC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t5\n-2.762793441\t1.029760898\tPATJCZ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t15\n-4.283393998\t-1.107107341\tPATJHK\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t9\n3.473578553\t1.946298898\tPATJJW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t11\n4.219398599\t2.713033259\tPATJKF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t3\n-3.477329392\t-1.534156858\tPATJLT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL2\tTAL2--TCR, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tTAL2+\tMale\tNear-ETP\t12\n-4.352965732\t2.118044913\tPATJLY\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t13\n3.500229459\t-4.465728938\tPATJRD\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tETP\t20\n-1.912514825\t2.073131621\tPATJRX\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t8\n-3.560744901\t-2.164919555\tPATJXW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t8\n0.963974099\t-4.53500241\tPATJZK\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t18\n2.419211488\t3.055426658\tPATKGP\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t10\n-2.327639956\t1.018646658\tPATKHZ\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t12\n-3.480458875\t-0.480978846\tPATKIH\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t12\n-4.238805671\t-0.452125668\tPATKKV\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t16\n0.651981692\t0.291633308\tPATKLW\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t16\n-2.308235784\t2.044828475\tPATKNX\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10\tTCRG\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t10\n-3.794490476\t-1.555428326\tPATKPW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t1\n-3.381821532\t-2.305100858\tPATKPY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t15\n3.601647954\t1.506027401\tPATKRF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t7\n4.329841714\t1.960543216\tPATKTY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t14\n-4.38748445\t2.165937961\tPATKVD\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t2\n1.695282559\t4.870086492\tPATKVH\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n1.586906295\t-5.9131729\tPATKVR\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t3\n-1.294572559\t4.329524816\tPATKWU\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB,TCRD\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t13\n3.802318673\t-3.390973508\tPATKXN\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--CDK6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t16\n2.992712121\t-4.255203902\tPATKYI\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--PSIP1\tNo TCR-R\tFusion\tETP-like\t14\tHOXA13+\tMale\t\t20\n-2.306872148\t1.124729217\tPATKZH\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t6\n2.756799798\t-3.479685485\tPATLAC\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tTCRG\tFusion\tETP-like\t9\tOther\tMale\tETP\t8\n1.884995322\t-5.627433001\tPATLEE\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tNo TCR-R\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t8\n3.230062108\t2.045040906\tPATLGU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t7\n2.373020272\t-4.632343947\tPATLHH\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--MLLT6\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tMale\tNon-ETP\t7\n1.443189721\t4.839591325\tPATLHS\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t10\n0.200839262\t0.011677076\tPATLIL\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tHOXA9+\tMale\tETP\t11\n-3.604749818\t2.042087615\tPATLLH\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1 enhancer SNV/Indel, TCR-R\tTCRB,TCRD\tIntergenic SNV/Indel\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t2\n0.776377301\t-4.3204481\tPATLMA\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRA,TCRG\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t8\n-0.827642758\t4.098357976\tPATLNS\tNKX2-1\tNKX2-1 Other\tMYB\tMYB--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t26\tOther\tFemale\tNon-ETP\t2\n-1.593860735\t1.019721211\tPATLNZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t9\n-3.582794328\t2.165466607\tPATLPN\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t2\n-3.106405039\t1.197262109\tPATLRW\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t2\n1.411617856\t4.624474824\tPATLRZ\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t13\n-3.010619659\t-1.830078899\tPATLUU\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n1.771940808\t-5.737049758\tPATLWX\tNUP98\tNUP98\tNUP98\tNUP98--KDM5A\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t12\n1.560828071\t4.083906472\tPATLZK\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tTLX1+\tMale\tNon-ETP\t19\n3.920498948\t-3.735387027\tPATMAF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tETP-like\t5\tTLX3+\tMale\tETP\t16\n-3.153789182\t1.315815747\tPATMCX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t11\n-1.405163635\t1.23740536\tPATMEN\tTAL1 DP-like\tTAL1 DP-like Jak\tBMI1\tCOMMD3--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tHOXA9+\tFemale\tNon-ETP\t2\n3.851367574\t-4.226156413\tPATMIL\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET, LMO2 Intergenic Loss (CAPRIN1)\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tETP\t19\n2.61393724\t-3.669532954\tPATMPM\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t17\n3.357086282\t-2.169841945\tPATMRE\tETP-like\t\t\t\tTCRA,TCRG\t\tETP-like\t6\tOther\tMale\tNear-ETP\t6\n1.507346969\t-4.825601279\tPATMTV\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t11\n-3.616881509\t0.672503651\tPATMVH\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t18\n3.619086366\t-2.924103677\tPATMXN\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--SATB1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t14\n3.568965058\t1.215524018\tPATMYZ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tETP\t12\n-4.075193543\t-1.394596874\tPATNAM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, CD99--JAK2\tTCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t2\n3.505747895\t1.32205385\tPATNIA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRG,TCRD\tTCR-R\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t6\n-0.776426573\t-0.720356702\tPATNIE\tSTAG2/LMO2\t\tLMO2\tLMO2--STAG2\tTCRG,TCRD\tTranslocation\tRare-Other\t13\tOther\tMale\tNear-ETP\t1\n3.866205316\t-3.28547734\tPATNNF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t13\n-3.490384002\t-0.985207974\tPATNYN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t11\n1.482657533\t4.736740411\tPATPBW\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t13\n-3.359664102\t1.006103933\tPATPDA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (intergenic)\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t2\n1.98558722\t4.446472943\tPATPGE\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t19\n-4.085671563\t-1.192037045\tPATPWF\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL2\tTAL2--TCR, LMO1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tTAL2+\tMale\tNon-ETP\t1\n2.410742383\t3.024100841\tPATPXS\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t11\n-3.838701625\t1.499366463\tPATRAB\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t4\n2.383032899\t-3.905851066\tPATRAP\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tETP\t7\n3.502442937\t1.999327958\tPATRDL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t10\n-4.342645783\t-0.121831312\tPATRFD\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t6\n-1.853551168\t1.611210406\tPATRGV\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2—FOXJ3, STAG2 (intronic_Indel;VAF:0.38)\tTCRB,TCRG\tTranslocation\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t1\n1.502832036\t4.580837071\tPATRHL\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n1.639416318\t-5.824005782\tPATRJL\tKMT2A\tKMT2A\tKMT2A\tKMT2A--DOT1L\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t3\n2.379376273\t2.979972184\tPATRKV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t13\n-2.945629139\t1.920672715\tPATRNA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR, ABL1--MBNL1\tTCRB\tTCR-R\tTAL1 DP-like\t2\tTAL2+\tMale\tNon-ETP\t2\n2.973975282\t-2.31855148\tPATRNH\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRD\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n3.36637507\t1.093308986\tPATRTG\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tETP-like\t5\tTLX3+\tMale\tNon-ETP\t5\n2.700627904\t2.896215976\tPATRUN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t4\n1.851701598\t4.59109813\tPATRXL\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n1.601182323\t-5.916339099\tPATRXZ\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t14\n4.134449105\t2.748094619\tPATSCP\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t4\n-3.249834437\t2.235735\tPATSDS\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB,TCRD\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNear-ETP\t14\n2.880474191\t2.327431739\tPATSEZ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t7\n4.23260222\t1.827434481\tPATSHF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t14\n-3.164638061\t-1.157960832\tPATSIL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer gain, LMO1 enhancer SNV/Indel\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tLMO1+\tMale\tNon-ETP\t15\n3.733808618\t2.134419025\tPATSIY\tTLX3\tTLX3 DP-like\t\t\tNo TCR-R\t\tTLX3\t24\tTLX3+\tMale\t\t9\n1.418135982\t4.283243478\tPATSIZ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t7\n3.218297105\t1.922523678\tPATSJM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t3\n-2.694482226\t1.396521509\tPATSJU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t3\n-1.197047614\t4.087248147\tPATSLH\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t2\n-4.411765475\t2.170488179\tPATSPG\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t7\n-3.650036235\t-1.004808664\tPATSPK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t2\n-4.609507222\t-0.847360014\tPATSRU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t16\n-3.392775197\t-1.49619919\tPATTAC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n3.638662915\t-4.572779834\tPATTDP\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t27\n3.28927527\t1.965220988\tPATTHM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t7\n3.169921498\t-2.636768996\tPATTHR\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--SFPQ\tTCRG,TCRD\tFusion\tETP-like\t6\tOther\tMale\tNon-ETP\t16\n-0.89904349\t4.022982896\tPATTIG\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t8\n3.881195169\t1.877196849\tPATTJY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t5\n3.752432447\t2.736839831\tPATTKX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t8\n-1.600056697\t-1.979499876\tPATTTE\tLMO2 γδ-like\t\tEIF4E3\tFOXP1/EIF4E3-HUS1\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tOther\tMale\tNear-ETP\t10\n3.175363164\t-2.348074376\tPATTWG\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t8\n3.743623834\t2.89388901\tPATTXC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n-4.099243064\t1.539204181\tPATUDM\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n-0.885183324\t4.13501817\tPATUWK\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRD\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t1\n3.813323598\t-3.643859565\tPATUZU\tETP-like\tRare ETP-like\tRUNX1\tRUNX1--AFF3\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tFemale\tETP\t13\n0.221937041\t0.094238841\tPATVDA\tTME-enriched\t\tNKX2-1\tNKX2-1--CDK6\tNo TCR-R\tTranslocation\tTME-enriched\t20\tNKX2-1+\tFemale\tNon-ETP\t2\n-2.038195987\t0.221320451\tPATVDU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain, LCK--TCR\tTCRG,TCRD\tFusion\tTAL1 DP-like\t7\tOther\tMale\tNon-ETP\t12\n4.301407914\t2.394897521\tPATVNY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t9\n-3.954394479\t1.21807021\tPATVTZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t17\n3.896611314\t2.129495681\tPATWHB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t10\n3.633965592\t2.717741311\tPATWIE\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t5\n2.585273604\t3.194495738\tPATWIJ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t14\n-1.886150498\t1.757721365\tPATWJU\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, MYB--TCR\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t5\n-0.911434848\t4.161227525\tPATWNL\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n-3.152184863\t1.456822455\tPATWXC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t15\n-4.100722451\t-1.019893407\tPATWYL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t15\n-1.807359059\t4.783243478\tPATWYZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-2.449853082\t-0.533825159\tPATXAL\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRD\tFusion\tTAL1 αβ-like\t8\tHOXA13+\tMale\tNon-ETP\t15\n5.380539041\t-2.424769103\tPATXKW\tBCL11B\t\tBCL11B\tBCL11B enhancer translocation\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t18\n2.945124726\t-4.260420978\tPATXKY\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--CBL\tTCRG\tFusion\tETP-like\t14\tHOXA13+\tMale\tETP\t10\n2.606088977\t-4.33740729\tPATXNG\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--PICALM\tTCRD\tFusion\tETP-like\t14\tOther\tMale\tNear-ETP\t16\n-3.958391805\t-1.368350923\tPATXNK\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t9\n-4.089320083\t1.961182774\tPATXNR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tNo TCR-R\tFusion\tTAL1 DP-like\t18\tOther\tFemale\t\t17\n-1.892853816\t4.874894441\tPATXSD\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t11\n1.503020625\t4.859400571\tPATXSK\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n3.09303246\t1.472699941\tPATXTA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, ETV6--FRK\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t3\n-2.060729761\t-0.011794537\tPATXTC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t15\n2.839192014\t-2.335903584\tPATXTY\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tOther\tMale\tNear-ETP\t7\n-2.084472437\t1.939109386\tPATYCH\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t3\n3.166810136\t-2.606984794\tPATYJK\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tHOXA9+\tMale\t\t12\n2.020271401\t-5.288754165\tPATYJU\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB,TCRG\tFusion\tKMT2A\t23\tNKX2-1+\tMale\tETP\t4\n-2.805033822\t1.383424223\tPATYMP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t18\n-4.190527577\t-1.357018172\tPATYWV\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t7\n1.382184129\t-4.670550048\tPATYYJ\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN, CCND2--TCR\tTCRG\tFusion\tHOXA9 TCR/MLT10\t12\tNKX2-1+\tFemale\tNon-ETP\t16\n-1.82190295\t4.657573045\tPATZFF\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t10\n-4.188579698\t1.043470085\tPATZSL\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t10\n-4.417132277\t0.435112149\tPATZST\tTAL1 DP-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t11\tOther\tFemale\tNon-ETP\t11\n1.776334624\t4.316033662\tPATZVD\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-0.086451788\t-3.967214763\tPATZWA\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t10\n3.470571141\t-2.258834779\tPATZWM\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tOther\tMale\tNear-ETP\t14\n-2.099619586\t0.591924847\tPATZXK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR, MYC--TCR, LMO2--CELF1\tTCRB\tIntergenic Loss\tTAL1 DP-like\t8\tTAL2+\tMale\tNon-ETP\t7\n1.639408212\t-4.701196849\tPATZXL\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNear-ETP\t10\n1.192000966\t-4.149282157\tPATZYC\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t3\n2.44673882\t3.151536048\tPATZYE\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t19\n-1.884451945\t4.761945546\tPATZYR\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t8\n4.293193917\t2.547728837\tPAUACG\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1, JAK2--PCM1\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t4\n-3.832530637\t-0.822320043\tPAUADY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n-3.381605763\t2.368447126\tPAUAFN\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t3\n-4.243407149\t1.705697001\tPAUAIZ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, NOTCH1--BCL11B enhancer\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t11\n3.088663201\t-4.175212085\tPAUAJA\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--ELL\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\t\t11\n-1.068757985\t4.301798165\tPAUAKN\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRG,TCRD\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t1\n-2.526817698\t1.026092828\tPAUAMR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t9\n-2.816838045\t1.141143501\tPAUANG\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t5\n-1.840295989\t1.296989501\tPAUASK\tNKX2-5\t\tNKX2-5\tNKX2-5--NME enhancer, GHR--BCL11B enhancer\tTCRB\tTranslocation\tNKX2-1\t26\tNKX2-5+\tMale\tNon-ETP\t3\n-2.928829451\t1.498853505\tPAUAVW\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2 Intergenic Loss (CAPRIN1), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t3\n2.35726748\t3.146668017\tPAUAXI\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t11\n4.038630586\t2.839085877\tPAUAYB\tTLX3\tTLX3 Immature\t\t\tNo TCR-R\t\tTLX3\t4\tTLX3+\tMale\t\t18\n-2.878226538\t1.708308995\tPAUAZV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t8\n-2.825784225\t1.467107952\tPAUBBJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t10\n3.695473294\t1.512826384\tPAUBBN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t4\n-3.141695638\t1.802925528\tPAUBCB\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LMO2 Intergenic Loss (RAG2)\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t15\n1.69662271\t4.192104638\tPAUBCT\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRA,TCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t13\n-4.022198577\t1.187874377\tPAUBDM\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n-3.4138905\t1.240325034\tPAUBGA\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t9\n-3.364616055\t1.520231903\tPAUBGT\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t14\n3.159664731\t2.069867433\tPAUBLL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t7\n3.827664952\t-2.388981997\tPAUBPY\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRG\tTCR-R\tETP-like\t6\tOther\tMale\tNon-ETP\t11\n-4.228886743\t-1.155179917\tPAUBRD\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t4\n-1.079397981\t4.32759887\tPAUBTC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--HMGB1\tTCRB\tTranslocation\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n-4.316408057\t-1.589957654\tPAUBXP\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t8\n1.85846911\t-5.730867564\tPAUCAS\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t2\n-1.852085967\t4.890561402\tPAUCCG\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t2\n-3.506122727\t-2.13572663\tPAUCDC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, CDKN2A--TCR\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t16\n5.430130105\t-2.39215821\tPAUCDY\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t9\n2.097190242\t4.250316918\tPAUCFA\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-2.408721108\t-1.212369501\tPAUCFC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t7\tOther\tMale\tNon-ETP\t18\n3.561532121\t-3.576078116\tPAUCFL\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t7\n1.550702672\t-4.568515002\tPAUCIB\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\tNon-ETP\t2\n1.493116717\t4.144312203\tPAUCIS\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRA,TCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n-3.679201026\t-1.713445007\tPAUCIZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tLMO1 enhancer SNV/Indel, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t3\n-1.642959226\t-1.949854552\tPAUCKE\tLMO2 γδ-like\t\tMYC\tMYC--TCR\tTCRG,TCRD\tTCR-R\tRare-Other\t1\tOther\tFemale\tNear-ETP\t9\n-3.711692471\t0.328448803\tPAUCRG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tNo TCR-R\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n3.52908812\t-3.635759055\tPAUCVB\tETP-like\t\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t17\n2.041146855\t-5.143746554\tPAUCWD\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tNo TCR-R\tFusion\tKMT2A\t23\tOther\tFemale\tNon-ETP\t11\n3.848242383\t-2.355412661\tPAUCWP\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--GALR2\tTCRG\tFusion\tETP-like\t6\tOther\tFemale\tNear-ETP\t14\n4.152605634\t2.429027618\tPAUDBF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tETP\t4\n2.831692319\t-4.122676074\tPAUDHH\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--CBL\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tMale\tETP\t18\n-3.992094178\t0.955683411\tPAUDPH\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t17\tOther\tFemale\tNear-ETP\t3\n0.701215606\t1.107469023\tPAUDUS\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTME-enriched\t20\tTLX3+\tFemale\tNon-ETP\t4\n-2.383079905\t1.551865519\tPAUDVG\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tNKX2-1+\tMale\tNon-ETP\t7\n-1.783046682\t4.679283441\tPAUEDT\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t7\n-0.378087361\t0.067184881\tPAUEFL\tNKX2-5\t\tNKX2-5\tNKX2-5--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tRare-Other\t1\tNKX2-5+\tFemale\tNon-ETP\t3\n4.061103444\t2.348344863\tPAUEFT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t10\n-0.178997297\t-0.03530674\tPAUEGE\tNKX2-5\t\tNKX2-5\tNKX2-5--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tRare-Other\t1\tNKX2-5+\tFemale\tNon-ETP\t2\n-4.36011066\t-1.075988948\tPAUEGI\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t8\n-3.227000375\t-1.930764615\tPAUEIL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t17\n-4.330678363\t1.458292664\tPAUEJV\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t9\n3.458875279\t-2.239619433\tPAUELB\tETP-like\tRare ETP-like\tTXNL4B\tTXNL4B--SFPQ, ITCH--SAMHD1\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tNear-ETP\t8\n1.433153253\t4.043920816\tPAUEPU\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-3.865456243\t1.579734624\tPAUETF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t25\n-4.292815347\t1.997468532\tPAUEUC\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t14\n-1.11134677\t4.385051549\tPAUEVJ\tNKX2-1\tNKX2-1 Other\tMYB\tMYB--TCR, NKX2-1 Intergenic Loss\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n4.223284822\t1.833579481\tPAUEWR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t15\n-3.499317307\t-1.776812493\tPAUEXN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, LMO1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t15\n3.074481587\t-2.339137732\tPAUEYF\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t12\n4.115215402\t2.120553077\tPAUEZV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t17\n3.92031775\t-3.09118694\tPAUEZX\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t4\n2.013171296\t-5.345193088\tPAUFAH\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNear-ETP\t9\n3.678826432\t-4.510736644\tPAUFAM\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--CEP295\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA13+\tFemale\tETP\t17\n-1.473771174\t4.294802964\tPAUFBJ\tNKX2-1\tNKX2-1 TCR\t\t\tTCRB\t\tNKX2-1\t15\tOther\tMale\tNon-ETP\t2\n3.581821542\t-3.055838048\tPAUFBK\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t9\tOther\tMale\t\t8\n-3.296495814\t2.302425445\tPAUFFN\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t14\n-1.677531351\t0.585139514\tPAUFGV\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t23\n-0.089776058\t-3.938290297\tPAUFHR\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA13+\tMale\tNon-ETP\t8\n3.185219388\t-4.052128016\tPAUFKM\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t10\n3.847253423\t-3.156726539\tPAUFZC\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t10\n4.147993665\t-3.361042916\tPAUFZI\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t4\n-3.126805325\t-1.404934227\tPAUGAA\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t9\n-4.335637946\t0.695893884\tPAUGAP\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-3.996487994\t0.025934235\tPAUGBG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n2.973780732\t-2.40564388\tPAUGCE\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tOther\tFemale\tETP\t13\n1.7543963\t4.257708371\tPAUGDT\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t12\n-4.152743239\t-0.188456147\tPAUGDZ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t16\n-0.148520608\t-3.878521621\tPAUGEJ\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t9\n-0.16456594\t-3.891924083\tPAUGEP\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t17\n-1.645065297\t4.320905507\tPAUGFN\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t11\n-3.319339414\t2.210207761\tPAUGLK\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t13\n-3.827615399\t-0.181524082\tPAUGLY\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n-3.517261643\t1.515049637\tPAUGPY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n-3.356675286\t2.22524649\tPAUGTY\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t3\n1.301950078\t-1.008442878\tPAUGVW\tSPI1\t\tSPI1\tSPI1--YWHAE\tTCRB\tFusion\tRare-Other\t10\tOther\tFemale\tNon-ETP\t3\n-2.765872736\t-1.611311376\tPAUGXW\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--BCL11B enhancer\tTCRG\tTranslocation\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t7\n3.875934701\t-2.473807513\tPAUHAF\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tGAIN:ZFP36L2\tNo TCR-R\tIntragenic Gain\tETP-like\t6\tHOXA13+\tMale\tETP\t22\n-4.277864833\t0.664920033\tPAUHDN\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n-4.178836007\t0.920933605\tPAUHHF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t21\n-1.028441046\t4.296202005\tPAUHJR\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 Intergenic Loss\tTCRB,TCRG\tIntergenic Loss\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t2\n-3.812974591\t1.733559907\tPAUHPC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t13\n0.237599592\t-4.088372409\tPAUHRP\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t5\n-4.12804832\t-0.458253115\tPAUHTB\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t9\n2.018786292\t-5.066781699\tPAUHWY\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tMale\tETP\t8\n-4.125509877\t0.777755261\tPAUHYI\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t3\n1.782534699\t4.741636575\tPAUIAW\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t23\n0.183909397\t0.178218768\tPAUIBA\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t10\n3.854785543\t-3.340943515\tPAUIDF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MSI2\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t5\n-1.480834801\t1.447773278\tPAUIEM\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\t\t\tTCRG\t\tTAL1 DP-like\t8\tNKX2-1+\tMale\tNon-ETP\t14\n-3.807353635\t1.166737855\tPAUIFA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t11\n-0.804599602\t-0.766916453\tPAUIFC\tSTAG2/LMO2\t\tLMO2\tLMO2--STAG2\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tHOXA9+\tMale\tNon-ETP\t2\n2.598525147\t3.051159442\tPAUIFR\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t3\n-1.424263556\t-1.940145909\tPAUIGB\tLMO2 γδ-like\t\tLMO2\tLMO2--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tOther\tFemale\tNon-ETP\t13\n1.496347528\t4.309388936\tPAUIGD\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-4.208338399\t0.340639085\tPAUIMK\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL1 enhancer gain\tTCRA,TCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tFemale\tNon-ETP\t9\n1.822556596\t-5.642604052\tPAUIPF\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t10\n-4.494512696\t-0.348983257\tPAUIRF\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t2\n3.332824807\t-2.44206947\tPAUISV\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tNo TCR-R\tTCR-R\tETP-like\t6\tOther\tMale\tETP\t8\n-1.480127056\t0.810398102\tPAUITE\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t17\n1.486542325\t4.839571775\tPAUIVD\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t15\n2.749983888\t2.842994273\tPAUIXW\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t8\n4.177642446\t2.627893031\tPAUJDD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n2.58522449\t-4.503521621\tPAUJDN\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRD\tFusion\tETP-like\t14\tHOXA9+\tFemale\tETP\t6\n-3.318713326\t-2.15564388\tPAUJID\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, MYC--TCR, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNear-ETP\t12\n0.21899889\t0.039922946\tPAUJJI\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t7\n3.615385633\t1.950836838\tPAUJNY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t22\n-3.685273786\t-1.947871029\tPAUJRU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-4.144342799\t-0.437311977\tPAUJSH\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t9\n3.58107863\t-3.056536853\tPAUJTE\tETP-like\tETV6 ETP-like\tETV6\tETV6--HOXB13\tNo TCR-R\tFusion\tETP-like\t9\tOther\tMale\tNear-ETP\t13\n0.307061176\t0.259165317\tPAUJVC\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNear-ETP\t5\n3.089037519\t1.633903921\tPAUJVJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t5\n-1.890059073\t4.824774564\tPAUJVL\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t4\n-1.929973502\t0.490832687\tPAUJXZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t17\n1.473759513\t4.806399167\tPAUJYG\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-4.08606257\t-0.668081879\tPAUJYN\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t14\n2.829946141\t-3.576267898\tPAUKBE\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNear-ETP\t13\n-1.67369913\t-1.94152671\tPAUKDP\tLMO2 γδ-like\t\t\t\tTCRG,TCRD\t\tRare-Other\t1\tOther\tFemale\tNon-ETP\t7\n-0.851108272\t4.195062936\tPAUKIF\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n4.332657914\t2.090025008\tPAUKIZ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t5\n2.547902684\t-3.792676866\tPAUKMA\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t17\n5.376353364\t-2.45019406\tPAUKMK\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t13\n-0.142885585\t-3.921518027\tPAUKTD\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR, NUP214--ABL1\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t17\n-4.633938689\t-0.442217379\tPAUKWJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t9\n-1.626242567\t4.459292234\tPAUKYJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-3.319752831\t0.875249267\tPAUKZJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n1.736868243\t4.45145017\tPAUKZU\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB,TCRD\tIntergenic INV\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-1.126966116\t4.256858171\tPAULCK\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--SATB1\tTCRB\tIntergenic INV\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t17\n1.898484092\t-5.379617392\tPAULGP\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tNo TCR-R\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t11\n-4.150609393\t0.867542387\tPAULGR\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t6\n-4.266885657\t1.981080354\tPAULGX\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t6\n0.751689892\t-4.323893725\tPAULIU\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tOther\tMale\tNear-ETP\t13\n2.321175437\t-4.609919249\tPAULMU\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--ZDHHC3\tTCRG,TCRD\tFusion\tETP-like\t14\tNKX2-1+\tFemale\tNon-ETP\t4\n-0.098436971\t-3.891218602\tPAULMW\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR, PHF6--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t9\n4.013901811\t-3.429645955\tPAULRC\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t5\n-4.361364264\t2.146513045\tPAULZF\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, PTEN--TRA, LYL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t16\n4.489842038\t2.355995954\tPAULZV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tETP\t14\n1.967996459\t4.744982064\tPAUMAV\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t13\n-1.677395899\t2.031103194\tPAUMDM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTAL1 DP-like\t19\tHOXA9+\tFemale\tNon-ETP\t13\n-3.276528735\t1.400816143\tPAUMHZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t6\n-1.919965584\t4.946687997\tPAUMIB\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-3.770388026\t1.919246972\tPAUMKL\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t18\n-3.586062331\t-0.618135809\tPAUMKW\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain, ABL1--PRPF19\tTCRA,TCRB,TCRG\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t19\n0.770772557\t-4.423225104\tPAUMLV\tMLLT10\tMLLT10\tMLLT10\tMLLT10--KMT2A\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t13\n-2.871818085\t-1.535695373\tPAUMLX\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tTCRA\t\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t11\n-4.265936751\t1.002761663\tPAUMNE\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t11\n3.054166894\t-2.598993718\tPAUMVW\tETP-like\t\t\t\tTCRA,TCRG\t\tETP-like\t6\tOther\tMale\tETP\t14\n-3.46880259\t-1.406177937\tPAUMXB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t10\n1.979354005\t4.639661134\tPAUNBU\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t14\n3.286816697\t-2.635718047\tPAUNDK\tETP-like\tETV6 ETP-like\tETV6\tETV6--PDGFRA\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tMale\tETP\t8\n-2.700530906\t0.703213394\tPAUNTS\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t12\n3.784095387\t-3.306913077\tPAUNVM\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t12\n-3.61591496\t-1.944041669\tPAUNXN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t11\n3.046265225\t-2.276545464\tPAUNZE\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n3.239295106\t-2.014626681\tPAUNZI\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tAMP:ZFP36L2\tNo TCR-R\tGain\tETP-like\t6\tOther\tMale\tNear-ETP\t13\n2.922896009\t1.345068515\tPAUPEZ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRA,TCRG\tTCR-R\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t4\n-2.220131416\t1.463047922\tPAUPFF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t11\n1.943043094\t4.940847695\tPAUPHP\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t17\n4.113169293\t1.703083814\tPAUPIV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t9\n3.736379724\t2.883603156\tPAUPJB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n3.35105\t1.137451828\tPAUPKL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t7\n-1.723467429\t0.794057251\tPAUPLV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRA,TCRB,TCRG\tTCR-R\tTAL1 DP-like\t8\tTAL2+\tMale\tNon-ETP\t8\n2.372032743\t-3.824991166\tPAUPTX\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t9\n3.186192613\t2.037308515\tPAUPUI\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t16\n-2.032199342\t2.237266601\tPAUPUW\tTAL1 DP-like\tTAL1 DP-like RPL10\tMYB\tMYB--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t2\n-0.340810556\t0.02919291\tPAUPVR\tNKX2-5\t\tNKX2-5\tNKX2-5--TCR\tTCRB\tTCR-R\tRare-Other\t1\tNKX2-5+\tFemale\tNon-ETP\t2\n1.610067945\t-5.910264193\tPAUPXU\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t11\n2.264491658\t-3.908939778\tPAURCM\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t21\n0.752689581\t-4.316930949\tPAURFC\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t5\n-2.962206264\t1.482342661\tPAURGS\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel, CCND2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t13\n3.305654149\t-4.15717858\tPAURIX\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tFemale\tETP\t17\n3.634214978\t-4.589627444\tPAURLC\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tFemale\tETP\t10\n2.375515323\t2.377794803\tPAURLR\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t4\n-3.934867759\t1.350112856\tPAURLU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t6\n2.35690866\t3.000683129\tPAURPE\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t3\n-4.038150926\t1.345158876\tPAURSX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t16\n-1.854242105\t4.865824521\tPAURTD\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t8\n3.697777371\t2.906370938\tPAURVF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n0.289590817\t0.659063876\tPAURVK\tTME-enriched\t\tNOTCH1\tNOTCH1--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tNKX2-5+\tMale\tNon-ETP\t8\n3.592502694\t-4.612711608\tPAURXZ\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t15\n3.883658509\t-3.505851209\tPAURZK\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--ETV6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t10\n2.963107209\t-4.202685534\tPAUSBN\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1\tNo TCR-R\tFusion\tETP-like\t14\tHOXA13+\tMale\tNear-ETP\t19\n3.550573449\t-4.673772513\tPAUSDN\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRB,TCRG\tFusion\tETP-like\t27\tHOXA9+\tMale\tNear-ETP\t17\n3.614879231\t-4.622746169\tPAUSDP\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t14\n3.124911408\t1.554248632\tPAUSDW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t5\n-1.779215832\t2.168144286\tPAUSEY\tTAL1 DP-like\tTAL1 DP-like RPL10\tMYB\tMYB--TCR, LMO2 enhancer SNV/Indel, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t15\n3.120647054\t-4.167552173\tPAUSGB\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--ELL\tTCRG\tFusion\tETP-like\t14\tHOXA13+\tMale\tNear-ETP\t17\n0.529229264\t0.442771346\tPAUSIC\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tNo TCR-R\tTranslocation\tTME-enriched\t20\tOther\tMale\tNon-ETP\t5\n-3.150656362\t1.427738131\tPAUSIS\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer gain, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t6\n-1.802332242\t-1.919644415\tPAUSLR\tLMO2 γδ-like\t\t\t\tTCRG,TCRD\t\tRare-Other\t1\tOther\tFemale\tNon-ETP\t2\n3.28253613\t-2.721368968\tPAUSNW\tETP-like\tETV6 ETP-like\tETV6\tETV6--LEUTX\tTCRG\tFusion\tETP-like\t6\tOther\tFemale\tNon-ETP\t5\n3.678670507\t-3.190535962\tPAUSNZ\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR, RBFOX1--TCR\tTCRG\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t5\n0.773077111\t0.48647672\tPAUSPD\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNear-ETP\t7\n-3.63422503\t1.405490339\tPAUSPZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 Intergenic Loss (RAG2)\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t21\n4.129496198\t-3.34374088\tPAUSTY\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--APAF1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t2\n1.855684381\t4.453671277\tPAUTBB\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t8\n-3.463822741\t2.068052352\tPAUTBD\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel, ABL1--LPP\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t6\n3.400985818\t1.81735462\tPAUTBM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t8\n-2.155585725\t2.207267345\tPAUTEF\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2 enhancer SNV/Indel, RPL10\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t16\n-4.175371547\t1.92794019\tPAUTIV\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LMO2 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t10\n-0.077782412\t-4.003870665\tPAUTJL\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB,TCRG\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNear-ETP\t13\n1.86120687\t-5.688969314\tPAUTKK\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t12\n-2.463405747\t2.184663833\tPAUTLJ\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2 enhancer SNV/Indel, RPL10\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t6\n0.950852733\t-4.485946357\tPAUTRX\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t21\n2.575747352\t-3.523843944\tPAUTRY\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNear-ETP\t3\n2.341927629\t3.237408221\tPAUTSB\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t13\n-4.347781081\t-1.238998591\tPAUTUL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel, CDKN2A--TCR\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t4\n-4.289318461\t0.921568752\tPAUTWN\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t6\n-4.477932591\t-1.228337228\tPAUTZD\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t2\n3.566708188\t-2.504697978\tPAUTZR\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--NONO\tTCRA,TCRG\tFusion\tETP-like\t6\tOther\tMale\tETP\t17\n-4.267333646\t1.411050976\tPAUUAL\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t15\n-1.950674016\t4.93250686\tPAUUAV\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB,TCRG\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t15\n-1.306906175\t4.328672708\tPAUUBG\tNKX2-1\tNKX2-1 Other\tMYB\tMYB--TCR, NKX2-1 Intergenic Loss\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t16\n2.089186053\t-4.993492782\tPAUUCS\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tFemale\tNear-ETP\t3\n-4.533393998\t-1.22228533\tPAUUCY\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t9\n1.392230372\t4.703748048\tPAUUET\tTLX1\t\t\t\tNo TCR-R\t\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t8\n-1.902784247\t4.895083249\tPAUUIK\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-1.557946701\t-1.986397921\tPAUUPM\tNUP98\tNUP98\tNUP98\tNUP98--TNRC18, MED12\tTCRG,TCRD\tFusion\tRare-Other\t1\tOther\tFemale\tNear-ETP\t6\n-3.466292281\t-1.816748559\tPAUUSY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, PTEN--TRA\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n2.906030755\t-3.811521232\tPAUUTD\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t13\n-0.148334761\t-3.92904514\tPAUUTU\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t6\n3.104847055\t-2.142245471\tPAUUXK\tETP-like\tMED12 ETP-like\tMED12\tMED12, RAD23B--TRA\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t5\n-2.965499659\t-1.576112449\tPAUUXR\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, PTEN--TRA\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n0.782650571\t-4.403367698\tPAUUYI\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA13+\tMale\tNon-ETP\t15\n3.185818772\t-2.99324268\tPAUUZY\tETP-like\tETV6 ETP-like\tETV6\tETV6--MBTPS2\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tETP\t15\n-4.13307776\t1.330524266\tPAUVAJ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t18\tLMO1+\tMale\tNon-ETP\t5\n-1.938737292\t1.030226648\tPAUVFE\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t4\n5.377287011\t-2.450470864\tPAUVHB\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tFemale\tETP\t15\n2.263697486\t3.051912606\tPAUVHP\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t5\n4.046478372\t1.81326598\tPAUVLV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t7\n4.085046392\t1.811561049\tPAUVPA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n-2.112094302\t0.923044026\tPAUVSC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t1\n-3.730732341\t1.264077366\tPAUVTP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t16\n-3.542877574\t-2.273526847\tPAUVUJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-3.433857818\t-1.528069078\tPAUVWZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t2\n1.768513303\t4.498163999\tPAUVYF\tTLX1\t\tTLX1\tTLX1--TCR, JAK2--TRA\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t11\n3.162375073\t1.533170164\tPAUVZI\tTLX3\tTLX3 Immature\t\t\tTCRB\t\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t7\n3.353767495\t-1.922150909\tPAUWKJ\tETP-like\tRare ETP-like\tBCL11B\tBCL11B-R\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tFemale\tNon-ETP\t17\n-3.439928193\t-1.404553711\tPAUWLB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t6\n-3.835817952\t1.650027812\tPAUWMZ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t5\n0.92303596\t-4.475741088\tPAUWNK\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t9\n2.603738408\t2.594010652\tPAUWNU\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-2.677170415\t-0.580796897\tPAUWRG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t10\n-2.511773128\t-0.851788699\tPAUWSL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t12\n-3.501200814\t0.077191458\tPAUWUY\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 Intergenic Loss (intergenic)\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t18\tOther\tFemale\tNon-ETP\t10\n-3.629461427\t0.251631111\tPAUWXI\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB,TCRG\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t17\n5.436456304\t-2.391007602\tPAUWZF\tBCL11B\t\tBCL11B\tBCL11B--NME enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t8\n3.989178281\t1.777249039\tPAUXAB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t11\n-3.333305974\t1.036446035\tPAUXAI\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO3--TCR\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t6\n2.03785811\t4.785447896\tPAUXCW\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t16\n-3.335482974\t-1.829494178\tPAUXHP\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t8\n-2.037693996\t0.304374695\tPAUXKE\tTAL1 DP-like\tTAL1 DP-like Other\tMYC\tMYC--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tFemale\tNon-ETP\t18\n3.843194108\t-3.693592727\tPAUXNC\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--SATB1\tTCRB,TCRG\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t17\n1.291298966\t-1.016101181\tPAUXPP\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRG,TCRD\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t2\n-2.176089842\t1.379009665\tPAUXRM\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t8\n0.86079083\t0.694615663\tPAUXRV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t14\n0.782114487\t-4.341247737\tPAUXSD\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t7\n1.854047399\t-5.460332572\tPAUXUU\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t9\n-2.763310332\t-2.067852675\tPAUXYI\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel, PTEN--TCR\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t17\n-1.563541402\t-1.931250274\tPAUXYM\tLMO2 γδ-like\t\tLMO2\tLMO2--BCL11B enhancer, MYC--MIR181A1HG\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tNKX2-5+\tFemale\tNon-ETP\t4\n-2.902040024\t-1.476957976\tPAUXZN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 enhancer SNV/Indel, MYB--TCR, PTEN--TRA\tTCRG,TCRD\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t3\n1.506575923\t4.691214383\tPAUYAB\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-3.085604091\t-1.534029185\tPAUYBP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t7\n-3.545057435\t-1.913337886\tPAUYCZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n2.575607638\t-3.654492795\tPAUYFW\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tTCRG,TCRD\tFusion\tETP-like\t16\tOther\tFemale\tNear-ETP\t14\n-4.402308125\t-0.732219278\tPAUYGT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t15\n-2.451783557\t1.022355259\tPAUYID\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR, LMO2 Intergenic Loss (RAG2)\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n-3.637359996\t-1.661008775\tPAUYIK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t18\n-2.139063795\t0.598145426\tPAUYJE\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, MYC--MYT1L\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t6\n-1.949842949\t2.021515668\tPAUYJF\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t3\n-1.821971137\t1.965655983\tPAUYMH\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t8\n0.903613668\t-4.438284099\tPAUYNP\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t18\n-0.152488847\t-3.921563804\tPAUYPM\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB,TCRG\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t12\n-4.274618525\t0.867308617\tPAUYSV\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t14\n3.548113446\t2.989979089\tPAUYWL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRG,TCRD\tTranslocation\tTLX3\t4\tNKX2-1+\tMale\tNon-ETP\t6\n-1.460051094\t1.25208515\tPAUZBJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRA,TCRB\tEnhancer Gain\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t13\n3.734138112\t-3.587344825\tPAUZCN\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer, LOSS:ETV6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tETP\t12\n5.377645116\t-2.447412431\tPAUZDC\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tFemale\tETP\t9\n0.578414063\t-4.231125056\tPAUZGD\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRB,TCRG\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t4\n-3.944378514\t1.635928453\tPAUZHK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t3\n0.15637825\t-4.020736157\tPAUZHX\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRB\tFusion\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t8\n-2.972266812\t-2.022855341\tPAUZKE\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n-3.401013989\t1.627841175\tPAUZZA\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t6\n4.285963635\t2.127964557\tPAVAAC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t8\n3.407450776\t-4.281344592\tPAVAEL\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tFemale\tNear-ETP\t20\n1.291502576\t-1.002842545\tPAVAGE\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRG\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t2\n-2.604463477\t1.470858634\tPAVAIR\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, CEP128--PDGFRB, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t2\n0.474751453\t0.551347077\tPAVAJF\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t14\n-3.741164107\t-1.135475099\tPAVAJG\tTAL1 αβ-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--STIL, LYL1--TCR\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t11\n-1.910346825\t1.865947664\tPAVAPE\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tLMO1+\tFemale\tNon-ETP\t4\n-1.560611058\t-1.901213467\tPAVARZ\tLMO2 γδ-like\t\t\t\tTCRG,TCRD\t\tRare-Other\t1\tOther\tMale\tNon-ETP\t7\n3.106085877\t-2.425262391\tPAVAVU\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tFemale\tNon-ETP\t6\n0.586590629\t0.421886385\tPAVAWK\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t4\n-2.36627068\t-0.517181903\tPAVAWP\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 αβ-like\t8\tOther\tFemale\tNon-ETP\t5\n-3.519930024\t-2.271515309\tPAVAWW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n3.323546033\t-2.442559659\tPAVAXI\tETP-like\tRare ETP-like\tHTR4\tHTR4--UBE2H\tNo TCR-R\tIntergenic INV\tETP-like\t6\tOther\tMale\tETP\t21\n0.991803985\t-4.410515963\tPAVBAW\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t13\n-3.115436335\t-1.592531144\tPAVBCW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n-4.058084626\t-0.30138874\tPAVBDL\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t8\n2.021602969\t-5.209989726\tPAVBEH\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tNKX2-1+\tFemale\tNon-ETP\t12\n3.884981732\t2.718238175\tPAVBEJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n-3.84066977\t2.104113639\tPAVBFC\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t3\n2.380967479\t3.162934125\tPAVBHE\tTLX3\tTLX3 DP-like\t\t\tNo TCR-R\t\tTLX3\t24\tTLX3+\tFemale\t\t7\n1.631149869\t-5.884014785\tPAVBIK\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t15\n3.900330167\t2.697948993\tPAVBKZ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, PDGFRA--TCR\tTCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t4\n2.795471768\t-3.763578355\tPAVBLJ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRB\tFusion\tETP-like\t16\tHOXA9+\tMale\tNear-ETP\t16\n-1.618870069\t-1.987205564\tPAVBLX\tLMO2 γδ-like\t\tLMO2\tLMO2--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tOther\tMale\tNon-ETP\t16\n3.049193482\t2.644831956\tPAVBPR\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, JAK2--CEP350\tTCRB,TCRD\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNear-ETP\t4\n-2.453556318\t-1.05009526\tPAVBSK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tTCRB\t\tTAL1 αβ-like\t8\tLMO1+\tFemale\tNear-ETP\t9\n0.599141102\t0.308080704\tPAVBTH\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t7\n-3.177121658\t2.084961474\tPAVBUB\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t4\n4.003213983\t-3.194209039\tPAVCBR\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t6\n4.394098382\t2.476164401\tPAVCDB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t15\n2.635851245\t3.256901324\tPAVCDF\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tNKX2-1+\tFemale\tNon-ETP\t10\n0.352391582\t0.696034551\tPAVCEA\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tNKX2-1+\tMale\tNon-ETP\t3\n-3.751233239\t-0.991496324\tPAVCHZ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n2.991760354\t2.957716525\tPAVCLF\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t7\n-0.030451436\t-3.86716932\tPAVCMP\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t16\n3.986234765\t1.761550367\tPAVCPX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t4\n3.245500188\t-2.160513579\tPAVCRF\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tFemale\tNear-ETP\t9\n-3.851518054\t1.214980305\tPAVCRK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t11\n3.893358808\t-2.372076928\tPAVCUG\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tNo TCR-R\tTCR-R\tETP-like\t6\tOther\tMale\tETP\t20\n2.656112294\t-3.704144895\tPAVCWG\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNear-ETP\t19\n-1.359285374\t0.707666636\tPAVCYC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t10\n-4.201542993\t1.412598432\tPAVCYV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tTAL2+\tMale\tNon-ETP\t11\n5.416736703\t-2.399619758\tPAVDBL\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tMale\tETP\t16\n-4.181441207\t0.556320429\tPAVDEB\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRA,TCRB\tEnhancer Gain\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t7\n3.654188733\t1.6260162\tPAVDFB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t9\n-4.446660418\t-1.331865012\tPAVDHU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t10\n-3.765126605\t0.040692337\tPAVDJU\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t13\n4.194396596\t2.612674535\tPAVDMR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t6\n-4.534598727\t-0.078582044\tPAVDSJ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t15\n-4.258562942\t1.860229672\tPAVESF\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2 Intergenic Loss (CAPRIN1), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t10\n1.84231029\t4.366901696\tPAVESV\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n1.283228736\t-1.023469984\tPAVEUT\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRA,TCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t11\n-3.095834632\t1.375677646\tPAVEUZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t8\n-1.112541374\t1.924712956\tPAVFAC\tNKX2-5\t\tNKX2-5\tNKX2-5--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-5+\tMale\tNon-ETP\t2\n2.980881791\t2.634378732\tPAVFAK\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tNKX2-1+\tFemale\tNon-ETP\t6\n-3.663318772\t-1.028242289\tPAVFAX\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2--CD99\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t2\n2.676497798\t3.064608872\tPAVFBV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-2.358622928\t2.208622754\tPAVFDF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t7\n3.416039567\t-2.50475496\tPAVFDX\tETP-like\tRare ETP-like\tZNF609\tZNF609--ARID4B\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tNear-ETP\t6\n4.405238729\t2.42383343\tPAVFHF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n3.116584878\t-3.745714127\tPAVFHW\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t12\n3.294763188\t-4.180974662\tPAVFIC\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--NAP1L1\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tFemale\tNear-ETP\t17\n-3.425439019\t-1.642394602\tPAVFIF\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t9\n4.130232434\t1.769508184\tPAVFIU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t8\n3.8256527\t-4.076842486\tPAVFKG\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tMale\t\t17\n3.070872884\t-2.33542937\tPAVFKN\tETP-like\tRare ETP-like\tJAK2\tJAK2--SMIM19, JAK2--PCM1\tTCRD\tFusion\tETP-like\t6\tTLX3+\tMale\tETP\t11\n-0.21505024\t-3.901348054\tPAVFLN\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t6\n5.383985143\t-2.41520828\tPAVFMU\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t10\n4.043974023\t1.4666304\tPAVFRT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t4\n3.623542409\t-4.563651263\tPAVFSG\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRA,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tNear-ETP\t8\n3.853257279\t-2.400239169\tPAVFSN\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tLOSS:ZFP36L2, LOSS:RUNX1\tTCRG,TCRD\tIntragenic Loss\tETP-like\t6\tHOXA13+\tMale\tETP\t13\n1.746812444\t4.846602262\tPAVFWD\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t14\n-0.104114552\t-4.00320357\tPAVFWF\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t17\n-2.365924139\t1.477118195\tPAVFXU\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t12\n3.934142213\t2.791182817\tPAVFYD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t3\n-3.726946969\t1.647548259\tPAVGMF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--MIR181A1HG\tTCRB\tTranslocation\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t7\n1.019365888\t4.080785573\tPAVGSF\tNKX2-5\t\tNKX2-5\tNKX2-5--TCR\tTCRB\tTCR-R\tNKX2-1\t21\tNKX2-5+\tMale\tNon-ETP\t4\n-3.532012839\t-2.193272769\tPAVGUP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 Intergenic Loss (CAPRIN1), TAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic Loss\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t13\n5.412736039\t-2.411694705\tPAVGXH\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t14\n-1.654493202\t1.888735593\tPAVHAA\tTAL1 DP-like\tTAL1 DP-like RPL10\t\t\tTCRA,TCRB\t\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t16\n-3.317523618\t2.100105346\tPAVHAV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t6\n-4.116525073\t1.395942867\tPAVHBC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t4\n-3.060840268\t2.147521556\tPAVHBL\tTAL1 DP-like\tTAL1 DP-like Jak\tNCOA6\tNCOA6--SPDEF\tTCRB\tTranslocation\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t12\n-1.682991971\t-1.955803215\tPAVHBN\tLMO2 γδ-like\t\tLMO2\tLMO2 enhancer SNV/Indel\tTCRG,TCRD\tIntergenic SNV/Indel\tRare-Other\t1\tOther\tMale\tNear-ETP\t14\n2.378921609\t3.394294561\tPAVHGX\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t12\n-1.674558361\t1.455374897\tPAVHJW\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t16\n3.768417459\t-2.508756101\tPAVHNX\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t6\tHOXA13+\tFemale\tETP\t25\n-1.229971285\t4.092805684\tPAVHUH\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t15\n3.196008306\t-3.977187097\tPAVHUL\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t17\n2.666134934\t-3.734106481\tPAVHUT\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t16\n-4.403376956\t-1.387698352\tPAVHVN\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t2\n-3.344910998\t0.969892562\tPAVIDN\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t11\tOther\tFemale\tNon-ETP\t11\n-0.864905496\t4.19704944\tPAVIEN\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t7\n1.949938636\t-5.231787383\tPAVIHA\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT3\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t5\n-1.681350101\t4.375933946\tPAVIIW\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t9\n3.677971463\t-4.6069929\tPAVINC\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tETP\t10\n-3.823374886\t1.271541417\tPAVJBF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t17\n-1.383613561\t-1.939943134\tPAVJCH\tNUP98\tNUP98\tNUP98\tNUP98--TNRC18\tTCRA,TCRG\tFusion\tRare-Other\t1\tOther\tFemale\tETP\t7\n-1.61590897\t1.845242918\tPAVJFA\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--TCR, RPL10\tTCRA\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t19\n3.423903565\t-2.544103085\tPAVJFH\tETP-like\tETV6 ETP-like\tETV6\tETV6--FOXO1\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tFemale\tNon-ETP\t8\n0.8596736\t-4.403920352\tPAVJHG\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNear-ETP\t2\n-1.139163901\t4.185189069\tPAVJJK\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 enhancer gain\tTCRB\tEnhancer Gain\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n-1.544913847\t1.05711943\tPAVJJU\tTAL1 DP-like\tTAL1 DP-like Other\tKMT2A\tKMT2A--CASP8AP2, RUNX2--TCR\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t4\n2.127380233\t3.411754668\tPAVJLJ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, TAL1 enhancer SNV/Indel\tTCRB\tTranslocation\tTLX3\t24\tLMO1+\tFemale\tNon-ETP\t9\n4.193575482\t1.805105746\tPAVJNX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n-4.142714639\t-1.079556882\tPAVJRI\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t12\n-1.967020173\t-0.302384108\tPAVJVV\tETP-like\tRare ETP-like\tLMO2\tLMO2 enhancer SNV/Indel, BCR--ABL1\tNo TCR-R\tIntergenic SNV/Indel\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n-3.019270201\t-1.869414389\tPAVJWE\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t22\n-3.8023838\t1.500314892\tPAVKCV\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t16\n0.430316787\t0.464938611\tPAVKJM\tTME-enriched\t\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tOther\tMale\tNon-ETP\t24\n-3.770699162\t0.865775347\tPAVKJU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t7\n3.22039948\t-3.271908938\tPAVKLI\tETP-like\tRare ETP-like\tRUNX1\tRUNX1--GATA3\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tNear-ETP\t18\n-3.566620011\t-1.263047039\tPAVKPV\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t1\n-3.098698158\t-1.525365292\tPAVKUU\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1--TCR, LMO1--LDLRAD4\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t4\n4.328800302\t2.029612363\tPAVKVL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t9\n-4.138618131\t1.43583113\tPAVKWV\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t11\n-2.246854324\t-0.072733357\tPAVKYJ\tTAL1 DP-like\tTAL1 DP-like Other\tMYC\tMYC--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tFemale\tNon-ETP\t8\n3.087132554\t-3.477737605\tPAVKZV\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t9\tHOXA9+\tFemale\tETP\t3\n-3.699400325\t0.562885047\tPAVLCX\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t5\n-0.957083781\t4.269413293\tPAVLFA\tNKX2-1\tNKX2-1 Other\tMYB\tMYB--TCR, NKX2-1 Intergenic Loss\tTCRG\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t1\n3.298630338\t-2.450984418\tPAVLGT\tETP-like\t\t\t\tTCRD\t\tETP-like\t6\tHOXA9+\tMale\tNear-ETP\t17\n3.760074239\t-2.334214866\tPAVLII\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--SFPQ, RANBP2--ABL1\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tETP\t17\n1.646351438\t-4.631055533\tPAVLKA\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tHOXA9 TCR/MLT10\t22\tHOXA13+\tMale\tETP\t6\n1.768198829\t4.869285405\tPAVLLL\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-1.456386555\t4.434050382\tPAVLLU\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t3\n-2.591844697\t1.844203175\tPAVLMX\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t11\n-4.396221061\t2.060714067\tPAVLMY\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\t\t\tTCRG,TCRD\t\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t7\n1.231524806\t-4.472181498\tPAVLPG\tNUP98\tNUP98\tNUP98\tNUP98--RAP1GDS1\tNo TCR-R\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA13+\tMale\tNon-ETP\t16\n2.888171773\t-2.349139392\tPAVLUN\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tNKX2-5+\tMale\tETP\t5\n0.674365501\t-4.294077098\tPAVLUP\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA13+\tFemale\tNon-ETP\t9\n-4.41221251\t-1.397688806\tPAVLWU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t12\n3.258507829\t-3.723634421\tPAVLXW\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET, LOSS:ETV6, LOSS:NF1,SUZ12\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tFemale\tETP\t25\n3.206469159\t-4.161543548\tPAVLYI\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tNon-ETP\t14\n0.139406304\t-3.757951438\tPAVMBP\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tNKX2-1+\tFemale\tNon-ETP\t10\n-4.153012176\t-1.720550835\tPAVMGW\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t22\n-1.956075866\t4.840171636\tPAVMKN\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t17\n-3.385611196\t-1.583621799\tPAVMLG\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t13\n1.816907983\t4.89189607\tPAVMLZ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t7\n2.345587592\t3.254885972\tPAVMNW\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t4\n-3.30553164\t1.333354652\tPAVMPB\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t12\n-4.227741857\t2.158677638\tPAVMPT\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t3\n1.302891831\t-1.022244512\tPAVMUJ\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRG\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t4\n1.61898766\t-5.832820594\tPAVMVL\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB,TCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t2\n-1.622792054\t1.757156432\tPAVMWK\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t10\n1.272627692\t-1.026017725\tPAVMYX\tSPI1\t\tSPI1\tSPI1--STMN1\tTCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t7\n-3.089492936\t1.517312825\tPAVMZJ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n-4.175167699\t-1.670178234\tPAVNBJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tNo TCR-R\tFusion\tTAL1 αβ-like\t11\tLMO1+\tMale\t\t8\n3.650843244\t1.340336145\tPAVNBS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--GRID2\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t11\n1.442084651\t4.254041017\tPAVNDL\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n-1.663977225\t4.537177384\tPAVNFU\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t13\n-1.772052247\t4.621407331\tPAVNGZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t2\n-3.731844563\t-1.223126828\tPAVNHX\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t16\n-1.869486113\t0.323167086\tPAVNKZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t7\tOther\tMale\tNon-ETP\t17\n-4.302792926\t-0.675904691\tPAVNRN\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t23\n-2.709380527\t1.11381346\tPAVNSM\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t16\n-1.945646543\t1.278161586\tPAVNTB\tTAL1 DP-like\tTAL1 DP-like Other\tTCF7\tLOSS:TCF7\tTCRB\tIntergenic Loss\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t4\n4.035874467\t1.749759615\tPAVNUC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t9\n3.754617791\t2.75964433\tPAVNWE\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t5\n5.416483979\t-2.392105281\tPAVNWI\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tNKX2-5+\tFemale\tETP\t16\n-2.534491916\t0.645798982\tPAVPCB\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t12\n-4.523581643\t-0.948045432\tPAVPCU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1 enhancer gain\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t10\n-2.303317804\t1.844976247\tPAVPCZ\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--MIR2117HG, RPL10\tTCRB\tTranslocation\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t9\n-3.502799649\t-1.515759766\tPAVPEN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n-3.787559171\t0.661359191\tPAVPGA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t9\n3.074059587\t-3.687440574\tPAVPHP\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t9\tHOXA9+\tMale\tNear-ETP\t7\n-0.045685668\t-3.974241673\tPAVPLD\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tNKX2-1+\tFemale\tNon-ETP\t22\n-3.379544158\t1.560893119\tPAVPLJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t10\n4.226287942\t2.6284526\tPAVPLN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t4\n3.773645501\t-3.457429587\tPAVPPV\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t4\n-2.904137154\t2.14553386\tPAVPTM\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10, NUP214--ABL1\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t10\n1.252397399\t-1.039891421\tPAVPUV\tSPI1\t\tSPI1\tSPI1--STMN1\tTCRB\tFusion\tRare-Other\t10\tOther\tFemale\tNon-ETP\t13\n4.450165372\t2.086482347\tPAVPYX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t9\n-3.758005519\t1.530443371\tPAVRAP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t5\n2.970582585\t-2.170630633\tPAVRAW\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n2.722009759\t-4.442722976\tPAVRBB\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tFemale\tNear-ETP\t9\n-3.044435759\t-1.82516092\tPAVRBK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t7\n-1.328116443\t4.230299771\tPAVRDC\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t2\n1.844352584\t4.406183541\tPAVRHT\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t20\n3.295065026\t1.840225518\tPAVRKG\tTLX3\tTLX3 Immature\t\t\tTCRB\t\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t7\n1.8585249\t4.805169404\tPAVRLH\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t18\n3.019621472\t-3.845823228\tPAVRLJ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t16\tHOXA13+\tFemale\tETP\t15\n2.118171792\t3.228641093\tPAVRLN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, LMO2 Intergenic Loss (RAG2)\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t19\n-1.703429301\t4.597362817\tPAVRLT\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRA,TCRB,TCRG\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t26\n3.043773751\t-2.271333634\tPAVRTX\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tFemale\tNon-ETP\t5\n0.070746045\t0.71291107\tPAVRUD\tTME-enriched\t\tTAL1\tTAL1 enhancer SNV/Indel, NUP214--SET\tTCRG,TCRD\tIntergenic SNV/Indel\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t6\n-3.618407149\t-1.036672413\tPAVRUJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t13\n-0.95230471\t4.281312287\tPAVRWC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--TCR, MYB--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t8\n-3.580322404\t2.077579558\tPAVRXK\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, LYL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t5\n4.031555276\t-2.950734794\tPAVRYM\tETP-like\tETV6 ETP-like\tETV6\tETV6--FOXO1\tNo TCR-R\tFusion\tETP-like\t9\tOther\tFemale\tETP\t8\n-4.194537301\t-0.603898525\tPAVRYP\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n3.613134007\t-2.47209829\tPAVSEI\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t6\tOther\tMale\tETP\t13\n4.140113454\t1.546674431\tPAVSHE\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t6\n0.812841754\t0.491805018\tPAVSIP\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTME-enriched\t20\tOther\tMale\tNear-ETP\t4\n3.753054242\t2.464501679\tPAVSMR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t11\n3.245728116\t-2.912372767\tPAVSRU\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--SLC4A8\tNo TCR-R\tTranslocation\tETP-like\t6\tHOXA13+\tMale\tETP\t8\n3.659895997\t1.899749339\tPAVSXU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRD\tTCR-R\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t7\n5.387114148\t-2.420257985\tPAVSYI\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t16\n3.986268621\t-3.282056748\tPAVSYX\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--ETV6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t10\n4.226162057\t1.593511046\tPAVSZJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t7\n1.287535768\t-1.03967303\tPAVSZX\tSPI1\t\tSPI1\tSPI1--STMN1\tTCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t4\n3.741443257\t-3.181662738\tPAVTAB\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t1\n-2.850893993\t-1.391813218\tPAVTAT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL2\tTAL2--TCR, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tTAL2+\tMale\tNon-ETP\t6\n-3.246220965\t1.6355595\tPAVTCA\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n3.891067128\t1.868106068\tPAVTCM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t8\n3.579274755\t-4.525198638\tPAVTCV\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t8\n2.406462293\t-3.876314103\tPAVTEZ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t6\n2.10760222\t-4.695884406\tPAVTPN\tMLLT10\tMLLT10\tMLLT10\tMLLT10--XPO1\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tMale\tETP\t4\n2.406729322\t-4.474955737\tPAVTXY\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--SEPT2\tTCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\tNon-ETP\t9\n-3.550808091\t-0.823076903\tPAVUCS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t11\n3.837086301\t1.543907941\tPAVUFK\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t19\n4.268751721\t2.424304545\tPAVUFU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRB\tTCR-R\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t7\n0.022424798\t-3.900061309\tPAVUGS\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t8\n-3.939343591\t0.472883761\tPAVUKV\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t13\n-0.791701127\t-0.709107458\tPAVURZ\tSTAG2/LMO2\t\tLMO2\tLMO2--STAG2\tTCRB\tTranslocation\tRare-Other\t13\tOther\tFemale\tNear-ETP\t1\n-3.283734937\t1.638004006\tPAVUSY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t3\n2.277538161\t2.964376271\tPAVUTN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t12\n2.604191165\t2.946866096\tPAVUUF\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t8\n-3.447612424\t1.479012311\tPAVUVZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRG,TCRD\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t15\n3.651732545\t-3.280669867\tPAVUWX\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t12\n3.07226954\t1.553893865\tPAVUYY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t13\n-1.297421229\t4.170391858\tPAVVBE\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t9\n-1.916617413\t4.948757947\tPAVVDS\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--BCL11B enhancer\tTCRB\tIntergenic INV\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n3.385872941\t2.86594373\tPAVVEI\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t7\n-4.473871131\t-1.024983942\tPAVVHL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t11\n-3.374738831\t-2.21028608\tPAVVIL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t19\n0.011529307\t-3.954906165\tPAVVLA\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t6\n3.433748345\t-4.330361545\tPAVVVF\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tFemale\tETP\t17\n4.389993768\t2.062082112\tPAVVVK\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n2.893096547\t-3.26834768\tPAVVZA\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--HNRNPH1, MED12\tTCRB\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNear-ETP\t19\n5.457290273\t-2.36591047\tPAVVZW\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tFemale\tETP\t8\n-1.634608765\t4.226982415\tPAVWAX\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t17\n-4.227998633\t0.535387993\tPAVWDA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t1\n-4.388222833\t0.54053551\tPAVWDF\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t10\n0.525636535\t0.439015568\tPAVWDR\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tTLX1+\tMale\tNon-ETP\t13\n-0.146627445\t-3.95109409\tPAVWHF\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRA,TCRB,TCRG\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t16\n-2.338616271\t0.071199574\tPAVWJA\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, MYC--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tFemale\tNon-ETP\t5\n-2.635950584\t-1.149346649\tPAVWJL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t13\n-4.484662909\t-0.588589489\tPAVWLX\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNear-ETP\t8\n4.036301236\t2.781160176\tPAVWMM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRA,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t4\n-2.94686379\t-1.26829499\tPAVWMN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tTCRA,TCRB\t\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t15\n-4.285176892\t-0.060501754\tPAVWNL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t12\n-4.19162931\t0.834614456\tPAVWUC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t5\n1.866242509\t4.626505673\tPAVWUJ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t20\n-3.563653369\t1.244191945\tPAVWWF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t2\n3.083116155\t-3.190350234\tPAVWZZ\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA13+\tMale\tETP\t7\n-3.032498856\t-2.041764199\tPAVXBD\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNear-ETP\t6\n-4.044635911\t1.148791254\tPAVXBS\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n1.559984069\t4.086952031\tPAVXGM\tTLX1\t\t\t\tTCRB\t\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t2\n3.794126134\t1.930901468\tPAVXHH\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t6\n2.258413415\t3.209379018\tPAVXIP\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, TAL1--STIL\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t8\n2.721709113\t2.866394103\tPAVXIR\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t17\n-2.177902896\t-0.575982451\tPAVXMK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tTCRB\t\tTAL1 αβ-like\t8\tOther\tFemale\tETP\t15\n-4.073628802\t0.396224291\tPAVXPD\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--TCR, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tMale\tNon-ETP\t17\n-2.017349203\t1.754928291\tPAVXPT\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2)\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t2\n0.459255438\t0.715419531\tPAVXSB\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t8\tOther\tMale\tNear-ETP\t6\n-2.254419584\t0.932619632\tPAVXTB\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, ABL1--SPTAN1\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t6\n-3.542497535\t-1.981185495\tPAVXUW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t13\n-3.119833727\t-1.107803761\tPAVXVA\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t5\n-3.508105178\t1.333631695\tPAVXWR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tLMO1+\tMale\tNon-ETP\t14\n-4.197975297\t-0.200912907\tPAVXYS\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t18\n-3.37968411\t2.12945658\tPAVYAZ\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t13\n-3.76223578\t-1.633038699\tPAVYCT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2--SSH2\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t14\n0.910830598\t-4.466222941\tPAVYDR\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t3\n4.118744473\t-3.35820192\tPAVYFB\tETP-like\tRare ETP-like\tHOXB13\tHOXB13--BAHCC1\tNo TCR-R\tIntergenic INV\tETP-like\t9\tOther\tMale\tNear-ETP\t6\n-1.731540937\t4.489275754\tPAVYFZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t9\n-2.285559316\t0.706674636\tPAVYGR\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tNCOA6\tNCOA6--SPDEF\tTCRB\tTranslocation\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t15\n-1.783769329\t0.530311764\tPAVYML\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t8\tLMO1+\tMale\tNear-ETP\t3\n-4.594673772\t-0.491926222\tPAVYSR\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t11\n-4.611564298\t-0.386781543\tPAVYTZ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t11\n3.590324025\t-4.682940185\tPAVYVY\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t11\n2.971740823\t2.641451419\tPAVZAV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--TCR\tTCRB\tTCR-R\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t12\n-4.244437118\t0.875828386\tPAVZCF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t2\n3.02056704\t-2.364384829\tPAVZCZ\tETP-like\tMED12 ETP-like\tMED12\tMED12, PDGFRB--N4BP2\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t7\n-4.111318727\t1.558191121\tPAVZHD\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t16\n2.319801431\t2.898167193\tPAVZJI\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t5\n0.743865709\t-4.408614814\tPAVZKL\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t7\n4.166068177\t2.3948012\tPAVZLS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t9\n-3.274558921\t-2.114591777\tPAVZTC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t5\n-0.774190087\t-0.723914802\tPAVZVG\tSTAG2/LMO2\t\tLMO2\tLMO2--CELF1\tTCRG,TCRD\tTranslocation\tRare-Other\t13\tOther\tFemale\tNon-ETP\t1\n0.338520031\t0.656891168\tPAVZXK\tTME-enriched\t\tTAL1\tLMO2--IGH,CCND2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTME-enriched\t20\tOther\tMale\tNon-ETP\t3\n-3.106792827\t-0.949658155\tPAWABB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t2\n3.234833341\t-2.214622676\tPAWACK\tETP-like\tRare ETP-like\tKMT2D\tKMT2D--AEBP2\tNo TCR-R\tFusion\tETP-like\t6\tOther\tFemale\tNear-ETP\t11\n3.646751981\t-4.543681323\tPAWAEK\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tFemale\tNear-ETP\t8\n0.834648948\t0.518411875\tPAWAEM\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tNo TCR-R\tTranslocation\tTME-enriched\t20\tOther\tMale\tNear-ETP\t4\n2.681714635\t2.840508044\tPAWAFV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t5\n3.729601483\t2.716553271\tPAWAIH\tTLX3\tTLX3 Immature\tTLX3\tTLX3--ETV6, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t20\n-3.852544923\t1.170972646\tPAWAII\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, PCNX4--TCR\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t4\n-3.667827506\t-0.785832881\tPAWAIM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t3\n-3.447979827\t-1.525229871\tPAWAIN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t10\n-3.493248363\t2.104808391\tPAWAKA\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t14\n2.256426673\t2.924158395\tPAWAKN\tTLX3\tTLX3 DP-like\t\t\tNo TCR-R\t\tTLX3\t24\tTLX3+\tMale\t\t7\n-1.772648056\t4.709095777\tPAWALP\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t8\n3.645320039\t-4.628542602\tPAWAMD\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tNon-ETP\t27\n3.754471402\t1.256605089\tPAWAMR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t5\n-1.937171299\t2.193773091\tPAWAMT\tTAL1 DP-like\tTAL1 DP-like RPL10\tMYB\tMYB--TCR, RPL10\tTCRB,TCRG\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t3\n2.936378579\t-2.615559995\tPAWAMV\tETP-like\tMED12 ETP-like\tMED12\tMED12, RUNX1--AFF3\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA9+\tFemale\tNear-ETP\t3\n3.44295321\t-3.374702393\tPAWANS\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tETP\t11\n-3.163962383\t1.986510814\tPAWARP\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t2\tTAL2+\tMale\tNon-ETP\t11\n3.642509084\t-4.580077826\tPAWAUA\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t14\n1.269242864\t-1.014549136\tPAWAWJ\tSPI1\t\tSPI1\tSPI1--YWHAE\tTCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t1\n-3.452802796\t-1.553449928\tPAWAYT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t14\n-1.310259279\t1.346845091\tPAWBEE\tTAL1 DP-like\tTAL1 DP-like Other\tNOTCH1\tNOTCH1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tNKX2-5+\tFemale\tNon-ETP\t14\n-3.893783469\t-0.232898607\tPAWBGD\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t17\n2.732756715\t-2.475851476\tPAWBKA\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tFemale\tNon-ETP\t21\n-3.835422654\t0.330381632\tPAWBMY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL2\tLMO1--TCR, TAL2--TCR\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tTAL2+\tMale\tNon-ETP\t3\n-1.873524089\t4.869690717\tPAWBPD\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t13\n-3.067809482\t1.031665266\tPAWBTV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, TAL1--TLE4\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n0.854255061\t-4.268539607\tPAWCUT\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t17\n-4.356948752\t-1.308969318\tPAWCWL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRA,TCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t12\n3.573422532\t-2.266944825\tPAWCWY\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA9+\tFemale\tNear-ETP\t6\n-1.292098772\t1.297378123\tPAWCXD\tTAL1 DP-like\tTAL1 DP-like Other\tBCOR\tBCOR--SH3KBP1\tTCRA,TCRB\tFusion\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t1\n-3.419416566\t-1.121088445\tPAWDEK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TCR, LMO1--TCR\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t1\n1.650023799\t-5.896645724\tPAWDFH\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t8\n-0.150052686\t-3.919057786\tPAWDHX\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRA,TCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t13\n2.438576083\t-3.756141364\tPAWDLY\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t3\n-3.31878819\t2.255464376\tPAWDMI\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t10\n0.473916869\t0.382925273\tPAWDSF\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t6\n-4.076582808\t1.390388072\tPAWDSJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t11\n-3.001999159\t1.013587177\tPAWDWJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB,TCRD\tFusion\tTAL1 DP-like\t8\tOther\tFemale\tNon-ETP\t8\n1.610687118\t4.864088834\tPAWDXE\tTLX1\t\tTLX1\tTLX1 Intergenic Loss, NUP214--ABL1\tTCRA,TCRB,TCRG\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t9\n1.97712503\t4.749419034\tPAWDXJ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t3\n3.425700765\t-2.781594455\tPAWEDW\tETP-like\tETV6 ETP-like\tETV6\tETV6--NCOA2\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tNon-ETP\t4\n1.782626729\t4.236846746\tPAWEEC\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t7\n-1.744729598\t4.67500335\tPAWEEX\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t1\n-3.340109963\t2.063366235\tPAWEGE\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR, LMO1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tLMO1+\tFemale\tNon-ETP\t13\n4.376916986\t2.045177758\tPAWEIP\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t13\n3.290416818\t2.296110929\tPAWEKR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t7\n2.329357009\t2.957213224\tPAWEKT\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n1.993546109\t4.896948636\tPAWEND\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB,TCRG\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n-2.932501812\t-1.628160893\tPAWESJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRG,TCRD\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t22\n-3.647772212\t0.894648552\tPAWETD\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel, TAL1 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t15\n3.037813764\t1.847052515\tPAWEUB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t6\n-1.17525762\t1.14982766\tPAWEYS\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t14\n-4.117572207\t-1.285408794\tPAWFBC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t6\n3.70613585\t-4.457541644\tPAWFBD\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG\tFusion\tETP-like\t27\tHOXA13+\tFemale\tETP\t12\n2.731270652\t-4.30604428\tPAWFBG\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--CD3G\tTCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\tETP\t11\n3.734787564\t-2.500170886\tPAWFBT\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tNo TCR-R\tTCR-R\tETP-like\t6\tHOXA13+\tMale\tETP\t15\n3.572836976\t-3.450636804\tPAWFHI\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--RUNX1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t4\n3.538321595\t-3.268268763\tPAWFIH\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--RUNX1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t4\n3.727827649\t2.858551086\tPAWFIM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRG,TCRD\tTCR-R\tTLX3\t4\tTLX3+\tMale\tETP\t5\n1.758327107\t-5.809503257\tPAWFLB\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t15\n-4.037322898\t1.426451624\tPAWFNJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t5\n4.087240796\t1.501750768\tPAWFRE\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t16\n-2.218505521\t0.661218763\tPAWFST\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t5\n2.710852962\t-2.485428035\tPAWFVY\tETP-like\tRare ETP-like\tPITX1\tC5orf66--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n-1.912985463\t4.945050538\tPAWFWF\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB,TCRD\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t8\n3.120369058\t-2.334668338\tPAWFXU\tETP-like\tMED12 ETP-like\tMED12\tMED12, BCR--ABL1\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t13\n2.673557143\t2.814780534\tPAWFYE\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t9\n-3.620431561\t-0.969856619\tPAWGCK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t8\n-3.682776828\t0.39365384\tPAWGDG\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2--LINC01058\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t24\n4.049490075\t-3.295365273\tPAWGGE\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t14\n-3.998401542\t1.200624884\tPAWGHK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t14\n3.677277188\t2.894318402\tPAWGHS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR, ABL1--ETV6\tTCRB\tTCR-R\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n-3.545706887\t2.076278508\tPAWGIT\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t5\n-0.714894075\t-0.685926437\tPAWGLE\tSTAG2/LMO2\t\tSTAG2\tSTAG2\tTCRB\tStop/Frameshift/Splicing\tRare-Other\t13\tOther\tFemale\tNear-ETP\t1\n3.3712431\t-2.514455258\tPAWGPI\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t15\n4.160881143\t2.394445241\tPAWGRS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t10\n3.517446618\t-3.334779679\tPAWGTM\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t12\n3.562944036\t-3.475866019\tPAWGTV\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tNKX2-1+\tMale\tETP\t14\n2.035164695\t-5.211660563\tPAWGTW\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tOther\tMale\tNon-ETP\t18\n-4.280431647\t0.58013022\tPAWGWC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t21\n2.677165132\t-3.74452418\tPAWGWD\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tETP\t17\n-1.884308953\t4.943752587\tPAWGWJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t15\n1.948739867\t4.820616544\tPAWGXI\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-3.330921788\t2.261818469\tPAWGXM\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t7\n1.925204854\t4.929847062\tPAWGXT\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t20\n3.138128381\t2.859673083\tPAWGXW\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n0.451546292\t0.704573989\tPAWGYN\tTAL1 DP-like\tTAL1 DP-like Jak\t\t\tTCRB\t\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t15\n1.238299232\t-4.415790259\tPAWGYU\tNUP98\tNUP98\tNUP98\tNUP98--RAP1GDS1\tTCRG\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA13+\tMale\tNon-ETP\t10\n-3.524391074\t-1.292247712\tPAWGYW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--MGST1, LMO3--TCR\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t10\n-2.102077742\t0.271515668\tPAWGYX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRG,TCRD\tIntergenic SNV/Indel\tTAL1 DP-like\t7\tOther\tFemale\tNear-ETP\t5\n-1.324386497\t4.010888875\tPAWGZM\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB,TCRG\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t8\n3.354789357\t2.690517724\tPAWHDJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t20\n3.496767621\t2.294930757\tPAWHEW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t5\n1.859534364\t4.79284364\tPAWHGU\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n2.796899896\t-3.762654483\tPAWHHA\tETP-like\t\t\t\tTCRG\t\tETP-like\t16\tHOXA13+\tMale\tNon-ETP\t15\n-2.219380755\t0.479295672\tPAWHHG\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, ETV6--PDGFRB\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t11\n2.303775411\t-4.589688003\tPAWHHJ\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tFemale\tNon-ETP\t2\n3.704843621\t2.466339887\tPAWHHV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t7\n-2.557178516\t1.387373865\tPAWHIG\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t21\n2.851940732\t-3.672362029\tPAWHJR\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t16\tHOXA13+\tFemale\tNon-ETP\t15\n2.319319348\t3.279634297\tPAWHMI\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-1.342059803\t1.188217462\tPAWHPE\tTAL1 DP-like\tTAL1 DP-like Other\tRUNX2\tRUNX2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t7\n-4.443423171\t0.028971002\tPAWHRW\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t6\n-3.460644622\t-2.206732213\tPAWHXB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t3\n3.886439424\t-3.446566045\tPAWIBU\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNon-ETP\t13\n3.160159688\t-3.61867398\tPAWIDD\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--ELL\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t11\n3.872359376\t1.478942812\tPAWIEX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t9\n-1.07459027\t4.319651425\tPAWIGC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 Intergenic Loss\tTCRA,TCRB,TCRG\tIntergenic Loss\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t6\n-4.274362941\t-1.616874277\tPAWIIR\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t17\n2.861453633\t2.804381192\tPAWIIZ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n1.803563933\t4.899618924\tPAWILT\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n2.412302594\t-4.464780032\tPAWIMC\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--SIPA1\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tMale\tNon-ETP\t4\n3.020306687\t2.959317267\tPAWIPA\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-3.263715405\t2.177139104\tPAWIPN\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tTAL1 enhancer SNV/Indel, LMO2--TCR, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t2\n1.790272336\t-5.745607078\tPAWIPY\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t13\n-4.325321336\t0.093453013\tPAWIRJ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n-4.184650083\t-1.661161959\tPAWIRN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-4.030746598\t1.59255153\tPAWIRR\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t15\n-3.345023532\t2.244849504\tPAWISF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB,TCRG\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n-3.678292651\t-1.456549465\tPAWIWN\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t14\n-2.867658396\t-1.427432477\tPAWIWS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t8\n-3.009872575\t1.251059473\tPAWIXS\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t11\n4.499154191\t2.156195224\tPAWJDA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t10\n3.150334458\t-3.752897918\tPAWJDL\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1\tNo TCR-R\tFusion\tETP-like\t16\tHOXA13+\tFemale\tNon-ETP\t17\n-3.378092427\t-1.645634233\tPAWJDS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t4\n3.783942323\t2.129205525\tPAWJIN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t18\n0.630540352\t0.473806978\tPAWJJC\tTME-enriched\t\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t18\n2.152922015\t-4.974198043\tPAWJJL\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tKMT2A\t14\tHOXA9+\tFemale\tNon-ETP\t14\n-3.67214622\t1.673133195\tPAWJKL\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 Intergenic Loss (RAG2)\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t6\n-3.780366797\t-1.584489643\tPAWJKM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t2\n-3.626321692\t1.604195893\tPAWJKX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t11\n-1.783558388\t1.055198491\tPAWJLL\tTAL1 DP-like\tTAL1 DP-like Other\tMYB\tMYB--FOXN1\tNo TCR-R\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t8\n0.708550196\t0.261805147\tPAWJRH\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t15\n3.650495153\t-3.346659362\tPAWJTF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t8\n-3.897704501\t-0.398328244\tPAWJUJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t14\n2.929737191\t2.30987984\tPAWJVB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t6\n-1.627371718\t2.008988679\tPAWJVJ\tTAL1 DP-like\tTAL1 DP-like RPL10\t\t\tTCRB\t\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t4\n3.983132939\t1.917755783\tPAWJWT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--NME enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t15\n-4.566124101\t-0.032384767\tPAWJYN\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n2.404172998\t3.215027869\tPAWKAN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, LMO2--TCR\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t7\n1.94301496\t4.85850364\tPAWKAP\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t16\n-1.884250481\t4.878311933\tPAWKBK\tNKX2-1\tNKX2-1 TCR\t\t\tTCRB\t\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t7\n-3.890216489\t-1.707931101\tPAWKIT\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n-3.055266757\t1.363989175\tPAWKKF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t9\n3.991969209\t2.826595843\tPAWKKY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR, TLX3--CALN1\tTCRG,TCRD\tTCR-R\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t4\n-2.166925509\t-0.742326676\tPAWKLD\tTAL1 αβ-like\tTAL1 αβ-like Other\t\t\tTCRG,TCRD\t\tTAL1 αβ-like\t7\tOther\tFemale\tNon-ETP\t6\n3.167158704\t2.052161277\tPAWKNV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t11\n-1.656151135\t4.340438188\tPAWKPT\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-4.609952111\t-0.427381366\tPAWKSC\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t10\n1.482002835\t4.365972341\tPAWKUU\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t12\n3.88019381\t-3.274727284\tPAWKXF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TBC1D5\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNon-ETP\t17\n-1.924693603\t1.214437903\tPAWKXN\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LMO2 Intergenic Loss (RAG2)\tNo TCR-R\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t13\n3.480089288\t-2.568755567\tPAWKXT\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2 SV\tNo TCR-R\tIntragenic INV\tETP-like\t6\tOther\tMale\tNon-ETP\t17\n-2.267078657\t2.175808967\tPAWKYL\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t14\n-2.600700159\t-1.119965016\tPAWKZN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA\tFusion\tTAL1 αβ-like\t8\tOther\tMale\tNon-ETP\t15\n0.088016253\t0.571300865\tPAWKZT\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t5\n-4.309512515\t-0.848192512\tPAWKZX\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2 enhancer gain, TAL1 enhancer SNV/Indel\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t13\n-2.200089653\t2.088976205\tPAWKZZ\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--NFYC, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t2\n-3.881527324\t1.187152684\tPAWLAE\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRA,TCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t4\n3.289837461\t1.538992584\tPAWLCA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t5\n1.058191876\t-4.253814399\tPAWLFC\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t7\n1.563181977\t4.753036321\tPAWLGM\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t17\n-1.632948298\t1.112188399\tPAWLHT\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tTAL2+\tMale\tNon-ETP\t12\n-1.171710004\t4.175862611\tPAWLLU\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t12\n5.413425546\t-2.407160937\tPAWLMK\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tMale\tNon-ETP\t21\n-3.199735541\t1.115308345\tPAWLMP\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t3\n1.62625299\t4.576972306\tPAWLPU\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRG,TCRD\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n0.719383698\t0.672996343\tPAWLSM\tTME-enriched\t\tTLX3\tTLX3--NME enhancer\tTCRB\tTranslocation\tTME-enriched\t20\tTLX3+\tMale\tNon-ETP\t13\n-3.61052074\t-1.838399708\tPAWLSN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 Intergenic Loss (CAPRIN1), TAL1 enhancer SNV/Indel, SOX9--TCR\tTCRA,TCRB\tIntergenic Loss\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t3\n-4.484052796\t0.345022709\tPAWLYX\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL1--THRAP3\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t15"
	}
	}
}

Visualization Code

{
	"genome": "hg38",
	"nobox": true, 
	"noheader": true, 
	"mdssamplescatterplot": {
		"analysisdata": {
			"tabular_data": "x\ty\tID\tSubtype\tGenetic Subtype\tDriver Gene\tDriver Gene annotated\tTCR Rearrangement\tClassification\tLeiden cluster lowres annotated\tLeiden cluster highres\tLeiden cluster oncogene expression\tGender\tETP_status\tAge\n-3.525958676\t-2.137440383\tPARBTF\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\t\t8\n3.740017514\t-2.392970025\tPARCWP\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--SFPQ\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\t\t14\n-1.727709372\t2.044387401\tPARDAU\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2 Intergenic Loss (RAG2)\tTCRG\tIntergenic Loss\tTAL1 DP-like\t19\tOther\tFemale\t\t1\n3.110903363\t-2.687494695\tPARDFP\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA9+\tMale\t\t6\n0.520056109\t0.341181309\tPAREDN\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\t\t4\n4.005582433\t1.440288604\tPAREGZ\tTLX3\tTLX3 Immature\t\t\tNo TCR-R\t\tTLX3\t5\tTLX3+\tFemale\t\t8\n0.521432738\t0.099699766\tPAREWU\tNKX2-5\t\tNKX2-5\tNKX2-5--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTME-enriched\t20\tNKX2-5+\tFemale\t\t2\n2.078600507\t4.753987611\tPARFIH\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\t\t5\n-1.629350741\t4.525304616\tPARFLD\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t12\n-3.121652503\t-1.846000373\tPARFME\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\t\t21\n-2.941824455\t-1.541497886\tPARFWJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\t\t11\n-0.153164406\t-3.771987855\tPARFXJ\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\t\t11\n1.798030953\t-5.525351703\tPARGDC\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tNKX2-1+\tMale\t\t7\n3.669257741\t2.831512034\tPARGFL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t4\n3.58144484\t-3.187594592\tPARGFM\tETP-like\tETV6 ETP-like\tETV6\tETV6--HOXC13-AS\tNo TCR-R\tFusion\tETP-like\t9\tOther\tMale\t\t6\n-4.105228324\t-1.528604209\tPARGHJ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t5\n3.974961381\t-3.090000569\tPARGIR\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--CDK6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\t\t7\n2.332626443\t2.864288152\tPARGPS\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\t\t5\n2.753340106\t-3.622757613\tPARHBI\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tOther\tMale\t\t7\n-2.92887475\t1.268902124\tPARHBT\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRA,TCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\t\t17\n2.827017884\t-2.377266824\tPARHEL\tETP-like\t\t\t\tTCRA,TCRG\t\tETP-like\t6\tHOXA9+\tMale\t\t6\n4.109657388\t1.685343683\tPARHES\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t4\n3.128025632\t2.026811898\tPARHLS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t5\n3.906800847\t2.640027822\tPARHPU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t3\n3.127390008\t-2.439874112\tPARICC\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\t\t5\n3.263993363\t1.583216847\tPARIET\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tNKX2-1+\tMale\t\t5\n-2.273204346\t0.017317575\tPARIFC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 αβ-like\t8\tLMO1+\tMale\t\t16\n1.318203549\t0.596390904\tPARIHY\tTME-enriched\t\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tTME-enriched\t20\tHOXA13+\tFemale\t\t11\n1.718004088\t-5.684849441\tPARIKE\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\t\t10\n3.799546819\t1.848375381\tPARIYD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t8\n0.824718576\t-4.391884982\tPARIZN\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRB,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\t\t10\n-2.743447442\t1.338992656\tPARJAY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tFemale\t\t15\n1.41242681\t4.334873975\tPARJFH\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\t\t19\n-2.671615977\t-1.455340683\tPARJMS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t12\n-4.204951186\t-0.182409182\tPARJNX\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB,TCRD\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tFemale\t\t3\n3.819010358\t1.480172933\tPARJPB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t7\n-4.273161788\t1.204917014\tPARJPL\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t18\tLMO1+\tMale\t\t3\n-0.061413784\t-3.926053225\tPARJSM\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tOther\tFemale\t\t18\n-4.144513268\t0.596960009\tPARJXW\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR, LMO1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\t\t14\n1.829883437\t-5.077009379\tPARJZC\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tFemale\t\t6\n5.477984529\t-2.344158112\tPARKES\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tFemale\tETP\t10\n-3.41898622\t0.690614641\tPARKLK\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO1\tLMO1--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tMale\t\t1\n-3.898605247\t-1.536237657\tPARKRJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, MYC--TCR\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t14\n1.87470017\t4.616448701\tPARLDJ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\t\t17\n-0.750428219\t-0.727807462\tPARLGK\tSTAG2/LMO2\t\tLMO2\tLMO2--TCR, STAG2 (p.E177X;VAF:0.52)\tTCRB\tTCR-R\tRare-Other\t13\tOther\tFemale\t\t2\n-3.59887733\t2.207270444\tPARLHD\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tFemale\t\t2\n-2.143479307\t2.149622024\tPARLIB\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--TCR, RPL10\tTCRB,TCRG\tTCR-R\tTAL1 DP-like\t19\tOther\tFemale\t\t6\n3.113240819\t1.55754\tPARLJA\tTLX3\tTLX3 Immature\tMYB\tMYB--PLAGL1\tTCRB\tFusion\tTLX3\t5\tOther\tMale\t\t8\n3.827507596\t1.604129017\tPARLLD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t6\n3.476593118\t1.446790755\tPARLMX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t3\n-2.027447898\t0.23361832\tPARLST\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tABL2--ZC3HAV1, TAL1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t7\tOther\tMale\t\t9\n-3.360688586\t-2.340107619\tPARMCL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\t\t5\n0.185288529\t0.759346784\tPARMED\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tOther\tMale\t\t7\n-1.654308547\t2.088957847\tPARMFF\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2 enhancer SNV/Indel, RPL10\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t19\tOther\tMale\t\t8\n2.397803884\t3.068212569\tPARMGT\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t9\n-2.594977875\t1.442772806\tPARMIA\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t16\n-3.822895188\t1.195850552\tPARMIH\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t12\n-3.793015857\t-1.432043611\tPARMJA\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t6\n-4.211122413\t-0.043154272\tPARMKK\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\t\t3\n-3.489028354\t-1.128580152\tPARMKM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\t\t1\n-0.055384178\t-4.013719022\tPARMKR\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRB\tFusion\tHOXA9 TCR/MLT10\t22\tHOXA13+\tMale\t\t10\n-3.199535031\t1.352855027\tPARMMV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\t\t6\n4.379965882\t2.499257625\tPARMNL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t17\n-3.331951995\t-1.084929406\tPARMRF\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t5\n4.007368188\t-3.07577151\tPARMSF\tETP-like\tETV6 ETP-like\tETV6\tETV6--FOXO1\tNo TCR-R\tFusion\tETP-like\t9\tOther\tFemale\tETP\t4\n-1.433915306\t0.726448715\tPARMUC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--IGH\tTCRA,TCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\t\t2\n3.182970624\t2.472679198\tPARMWH\tTLX3\tTLX3 Immature\t\t\tNo TCR-R\t\tTLX3\t4\tTLX3+\tFemale\t\t20\n-3.171633263\t-1.112425625\tPARNBN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2--TCR\tNo TCR-R\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\t\t10\n3.459999185\t1.716880978\tPARNEH\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t4\n3.394528489\t-3.578235566\tPARNIK\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR, HDAC9--CUX1\tTCRG\tTCR-R\tETP-like\t9\tHOXA13+\tMale\t\t16\n3.884319406\t-3.619193494\tPARNJB\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1, MED12\tTCRG,TCRD\tFusion\tETP-like\t9\tHOXA13+\tFemale\tETP\t22\n-4.32233705\t-1.575219452\tPARNMV\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\t\t9\n0.061544876\t0.398080916\tPARNNW\tTME-enriched\t\tRUNX1\tRUNX1 germline deletion\tTCRB\tGermline Deletion\tTME-enriched\t20\tNKX2-1+\tMale\t\t17\n3.2389885\t-2.721088588\tPARNPX\tETP-like\t\t\t\tTCRD\t\tETP-like\t9\tHOXA13+\tMale\t\t19\n-1.926598151\t4.957421125\tPARNSP\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t6\n-3.587534089\t-2.157629191\tPARNWJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t6\n-3.57148232\t0.0052858\tPARNXJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\t\t4\n-2.358279963\t-0.51913765\tPARPCK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2--TCR, JAK2--TPR, LMO2 Intergenic Loss (intergenic)\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t7\tOther\tMale\t\t14\n-1.067844619\t4.300611795\tPARPET\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRA,TCRG\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tFemale\t\t4\n2.746739249\t-4.30407828\tPARPGD\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tETP-like\t14\tHOXA9+\tMale\t\t9\n-3.547946591\t-2.055104434\tPARPHB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t1\n-2.046610732\t2.006144822\tPARPUL\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tOther\tMale\t\t2\n3.914547544\t2.377008021\tPARPYJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tFemale\t\t7\n2.9302455\t2.742583097\tPARPYK\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t6\n3.908736806\t-3.27440828\tPARRJR\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\t\t12\n-3.958756824\t-0.511760413\tPARRKK\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--TCR, LMO2 enhancer gain\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\t\t8\n2.859759908\t-2.813869655\tPARRWT\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tNKX2-5+\tMale\t\t11\n5.370133023\t-2.460191667\tPARSET\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tMale\t\t10\n-3.523152966\t-0.82724744\tPARSJG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\t\t11\n-2.040443141\t0.349082172\tPARSLA\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LCK--KHDRBS1\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\t\t2\n-3.19526567\t1.415786565\tPARSNX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tMale\t\t13\n-3.509674449\t0.651752353\tPARSUU\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRA,TCRB,TCRG\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\t\t3\n1.847763162\t4.39333278\tPARTBP\tTLX1\t\tTLX1\tTLX1--TCR\tTCRA,TCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\t\t5\n3.673958402\t-4.525918185\tPARTFR\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--HNRNPH1\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tFemale\t\t11\n3.191459279\t-3.231175124\tPARTLX\tETP-like\tHOXA13 ETP-like\tETV6\tETV6 SV\tNo TCR-R\tIntragenic Loss\tETP-like\t9\tHOXA13+\tFemale\t\t10\n5.220864873\t-2.500455558\tPARTLY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--SATB1\tNo TCR-R\tTranslocation\tETP-like\t9\tTLX3+\tMale\tETP\t12\n3.339457135\t2.884613336\tPARTPW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t15\n2.863631349\t-4.008847176\tPARTRH\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1\tTCRG\tFusion\tETP-like\t14\tHOXA13+\tFemale\tETP\t9\n3.823433499\t2.767038405\tPARTUK\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t6\n0.613636117\t0.722579897\tPARTUZ\tTME-enriched\t\t\t\tTCRD\t\tTME-enriched\t20\tOther\tMale\t\t15\n-3.787958045\t0.449337334\tPARUCV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCF7, LMO2--TCF7\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\t\t8\n4.312742333\t2.384897531\tPARUEU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t5\n3.5809413\t-4.195526301\tPARUKW\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--NAP1L1\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA13+\tFemale\t\t9\n3.563206773\t1.352701128\tPARULB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRG\tTCR-R\tTLX3\t5\tTLX3+\tMale\t\t17\n-1.867321212\t0.528483213\tPARVDS\tTAL1 DP-like\tTAL1 DP-like Other\tMYC\tMYC--TCR, TAL1 enhancer gain\tTCRA,TCRB,TCRG\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tMale\t\t15\n-0.807990063\t-0.729689419\tPARVEI\tSTAG2/LMO2\t\tLMO2\tLMO2 enhancer SNV/Indel, STAG2 (intronic_Indel;VAF:0.3)\tTCRG,TCRD\tIntergenic SNV/Indel\tRare-Other\t13\tOther\tFemale\t\t3\n-2.916840692\t-1.99009329\tPARVHY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t15\n-2.267027039\t2.119993032\tPARVMR\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1 enhancer gain, RPL10\tTCRB\tEnhancer Gain\tTAL1 DP-like\t19\tLMO1+\tMale\t\t4\n4.108444314\t1.664021433\tPARVRF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, ABL1--NPAT\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t5\n-0.930882324\t4.240035356\tPARVSC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--IGH, MYB--TCR\tTCRB\tIntragenic INV\tNKX2-1\t26\tNKX2-1+\tFemale\t\t1\n1.888235192\t-4.548440635\tPARWDH\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRB,TCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\t\t2\n-3.88398685\t-0.008112668\tPARWDM\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\t\t15\n0.709133606\t-4.279505431\tPARWID\tNUP98\tNUP98\tNUP98\tNUP98--CCDC28A\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\t\t19\n3.699018102\t-3.51740998\tPARWKM\tETP-like\tRare ETP-like\tHOXB13\tHOXB13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tOther\tFemale\tETP\t13\n3.418156724\t-2.764052331\tPARWLB\tETP-like\tETV6 ETP-like\tETV6\tETV6--LINC01252, LMO2-RAG-MS4A2 Intergenic Inversion\tTCRA,TCRG\tTranslocation\tETP-like\t9\tHOXA13+\tMale\t\t19\n-2.978230734\t-1.742802679\tPARWLP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t7\n3.605205636\t-2.426401793\tPARWMF\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--NONO\tTCRG,TCRD\tFusion\tETP-like\t6\tHOXA9+\tMale\t\t11\n-3.163591404\t1.461980165\tPARWNW\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\t\t11\n4.451989751\t2.464414657\tPARWTC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\t\t8\n0.844473224\t-4.404668509\tPARWTI\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\t\t4\n3.82440434\t-2.311058938\tPARXAH\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tLOSS:ZFP36L2\tTCRD\tIntragenic Loss\tETP-like\t6\tOther\tMale\t\t15\n-4.367391963\t-1.118143737\tPARXBJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\t\t3\n2.60931788\t-3.859299361\tPARXBR\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\t\t14\n4.311144452\t1.613900483\tPARXCZ\tETP-like\tMED12 ETP-like\tMED12\tMED12, MSX2--BCL11B enhancer\tTCRG,TCRD\tStop/Frameshift/Splicing\tTLX3\t5\tOther\tMale\t\t15\n-1.670447875\t4.329137624\tPARXDJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t7\n-4.002845187\t1.045618952\tPARXFY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t10\n-2.990684886\t-1.410332739\tPARXHT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TCR\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tOther\tFemale\t\t13\n1.946825366\t4.686654389\tPARXLS\tTLX1\t\t\t\tNo TCR-R\t\tTLX1\t21\tTLX1+\tMale\t\t4\n1.410074811\t4.32312423\tPARXMV\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tNKX2-5+\tMale\t\t12\n0.918854575\t0.683169365\tPARXNC\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTME-enriched\t20\tTLX3+\tFemale\t\t6\n3.531361203\t-4.578592002\tPARXNE\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t15\n-2.382249255\t0.991116345\tPARXNI\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t2\tTAL2+\tFemale\t\t5\n2.555513959\t-2.61594361\tPARXPK\tETP-like\tMED12 ETP-like\tMED12\tMED12\tTCRG,TCRD\tStop/Frameshift/Splicing\tRare-Other\t1\tOther\tFemale\t\t4\n-4.294844766\t1.874380291\tPARXPZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\t\t14\n4.410365682\t2.339883149\tPARXTW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRA,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\t\t7\n-4.446770329\t-1.327048718\tPARXVS\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\t\t11\n-4.102312703\t-0.091887004\tPARXYI\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\t\t2\n1.977918963\t4.753533662\tPARYGI\tTLX1\t\t\t\tNo TCR-R\t\tTLX1\t21\tTLX1+\tMale\t\t5\n-1.645381738\t4.256379903\tPARYGJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t15\n-3.948689361\t2.186093867\tPARYHC\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2 enhancer SNV/Indel, LEF1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\t\t1\n0.970672231\t0.245443285\tPARYJG\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--GTPBP8\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\t\t4\n4.069561582\t1.795336545\tPARYMD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t6\n-2.947807331\t-1.976608335\tPASFHR\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t14\n-2.457701106\t1.399910033\tPASFKA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t8\tOther\tMale\t\t12\n4.13348208\t-2.80795902\tPASFLK\tETP-like\tETV6 ETP-like\tETV6\tLOSS:ETV6\tNo TCR-R\tIntragenic Loss\tETP-like\t25\tOther\tMale\tETP\t12\n-3.681082625\t-0.822299957\tPASFSI\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\t\t5\n-1.299697515\t4.033996881\tPASGDZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\t\t16\n-1.178286802\t4.143340409\tPASGEC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tFemale\t\t13\n3.400049787\t-2.567641675\tPASGFH\tETP-like\tRare ETP-like\tBCL11B\tBCL11B--GRK3\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tMale\t\t17\n-3.769002576\t-0.276518315\tPASGKL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\t\t1\n-1.383758549\t0.892314494\tPASGMR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\t\t14\n-1.995905001\t0.627546609\tPASGRD\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, MYC--MIR181A1HG\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tFemale\t\t4\n3.434176068\t-2.365510642\tPASGRU\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRA,TCRG\tStop/Frameshift/Splicing\tETP-like\t6\tNKX2-5+\tFemale\tETP\t15\n3.328617196\t1.860005558\tPASGSR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t5\n3.568671804\t-3.314490973\tPASGUF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\t\t13\n-1.778437395\t4.802608312\tPASGUH\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\t\t6\n-3.625947614\t1.355555356\tPASGUX\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t7\n3.105457883\t-3.392140328\tPASGZY\tETP-like\tETV6 ETP-like\tETV6\tETV6--LINC01470\tNo TCR-R\tTranslocation\tETP-like\t9\tOther\tFemale\t\t6\n-0.154469867\t-3.971559464\tPASHDV\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tNo TCR-R\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\t\t11\n3.665158372\t-3.305510461\tPASHGM\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\t\t11\n2.639783483\t-4.193273246\tPASHIL\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tTCRB\tFusion\tETP-like\t16\tHOXA9+\tFemale\tETP\t11\n3.130832295\t2.868290008\tPASHNK\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t6\n2.58635078\t1.898622573\tPASHPD\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t5\tTLX3+\tMale\t\t8\n-3.713902612\t0.641522945\tPASHUP\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tNo TCR-R\t\tTAL1 DP-like\t18\tOther\tMale\t\t9\n-4.25557055\t0.972917378\tPASHXL\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\t\t13\n-1.20181804\t3.725408137\tPASHYJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tNo TCR-R\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\t\t2\n-3.434272428\t-1.588758289\tPASHZK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t12\n3.640250306\t-3.043444335\tPASIFP\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--ETV6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\t\t1\n2.97530232\t2.759717763\tPASIIF\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, IL7R--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\t\t7\n3.490577321\t2.506576837\tPASIIY\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t5\n-3.005931277\t-1.937178671\tPASIJX\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\t\t9\n-4.530544181\t-0.434969484\tPASILU\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\t\t6\n-4.273112674\t1.85695082\tPASILW\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, LYL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tFemale\t\t12\n-4.275277753\t2.076217473\tPASINX\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, LYL1 enhancer gain\tTCRG,TCRD\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\t\t11\n-1.99999531\t4.61556989\tPASIPN\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB,TCRG\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\t\t5\n-3.802393575\t1.946057737\tPASIWE\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\t\t4\n3.118990521\t2.420347751\tPASJFJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\t\t6\n-1.278051343\t4.197521031\tPASJGV\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\t\t15\n3.365686517\t-4.065975367\tPASJHT\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--NAP1L1\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tFemale\t\t29\n2.280967574\t-4.442427813\tPASJIY\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--PICALM\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tMale\t\t12\n5.49245749\t-2.313430964\tPASJJR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CASC15\tNo TCR-R\tTranslocation\tBCL11B\t25\tTLX3+\tMale\tETP\t14\n2.026276689\t3.156991542\tPASJLN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\t\t10\n-1.666964878\t4.15945226\tPASJMC\tNKX2-1\tNKX2-1 TCR\t\t\tTCRB\t\tNKX2-1\t19\tNKX2-1+\tMale\t\t3\n-4.477808375\t-1.2219581\tPASJXW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tNo TCR-R\t\tTAL1 αβ-like\t11\tOther\tFemale\t\t3\n5.445354085\t-2.380467355\tPASJYI\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\t\t14\n-4.046153922\t2.065843404\tPASKAD\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tFemale\t\t10\n1.952303033\t-5.496273696\tPASKBB\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\t\t12\n1.936371903\t4.685892404\tPASKCL\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB,TCRG\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\t\t12\n-4.051838775\t-1.281448543\tPASKGG\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n-4.510823388\t-0.283677816\tPASKIC\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t11\n3.144849401\t-2.596750438\tPASKLK\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t10\n-4.14914598\t1.98059994\tPASKLU\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t14\n3.388226132\t-2.002098977\tPASKMG\tETP-like\tRare ETP-like\tBCL11B\tBCL11B-R\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tFemale\tETP\t19\n-1.744322915\t2.002692521\tPASKRN\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t5\n3.157189946\t-2.117386996\tPASKSY\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t9\n-4.185752768\t-0.638630151\tPASKTG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n2.631453853\t2.982886851\tPASKVH\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tNKX2-1+\tFemale\tNon-ETP\t6\n2.433053355\t3.250582278\tPASKWG\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t11\n-4.341803689\t1.663859189\tPASKXA\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t15\n2.541727405\t3.00631696\tPASKXN\tTLX3\tTLX3 DP-like\t\t\tNo TCR-R\t\tTLX3\t24\tTLX3+\tMale\t\t9\n-4.371956487\t-1.170717656\tPASKZU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t2\n-3.964573522\t0.151017294\tPASLAB\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t4\n4.436504464\t2.217125953\tPASLBB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRA,TCRB,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n3.208334546\t2.577819884\tPASLFT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t19\n-4.215504546\t1.430376232\tPASLPH\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--CD1E\tTCRB,TCRG\tIntergenic INV\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-1.982320685\t4.88722545\tPASLXY\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRA,TCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t14\n-3.54531445\t-1.524633228\tPASMHF\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tLMO1 enhancer SNV/Indel, TAL1 enhancer SNV/Indel\tTCRA\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t12\n-4.399886746\t-1.143890082\tPASMIC\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t13\n-3.527627845\t1.768809021\tPASMNV\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--CSTF3\tTCRB\tTranslocation\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-4.496935029\t-0.246983915\tPASNEH\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n4.045154672\t-2.932875335\tPASNLF\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t9\tOther\tMale\tETP\t16\n3.80859242\t1.418384374\tPASNNJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tETP\t12\n2.246668916\t-3.668015897\tPASNNM\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t11\n4.082888227\t-3.190902173\tPASNTZ\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t7\n0.2394136\t-0.010339252\tPASNWP\tTME-enriched\t\tTLX1\tTLX1--RPP30\tNo TCR-R\tIntergenic Loss\tTME-enriched\t20\tHOXA13+\tMale\tETP\t6\n3.553622346\t-3.669604241\tPASNXS\tETP-like\t\t\t\tTCRB,TCRG\t\tETP-like\t9\tHOXA9+\tFemale\tNear-ETP\t7\n-3.225762982\t1.32040006\tPASPBU\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t15\n-3.405853171\t-0.423370629\tPASPDL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t6\n-3.88787951\t1.712590159\tPASPDS\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t10\n-3.645303388\t2.144098819\tPASPJR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t5\n2.370042424\t-4.507454574\tPASPJU\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tFemale\tNon-ETP\t3\n-3.119896431\t-0.87875241\tPASPLG\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t7\tOther\tFemale\tNon-ETP\t7\n-3.289226909\t1.348209441\tPASPLW\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL\tTCRB,TCRD\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t3\n-4.116225381\t1.605578483\tPASPNI\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t7\n-2.825540919\t1.520524681\tPASPNW\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n4.440900426\t2.269109071\tPASPPN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t12\n-3.537191052\t-0.66472721\tPASRAF\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, BCR--ABL1\tTCRA,TCRB,TCRG\tFusion\tTAL1 αβ-like\t7\tOther\tMale\tNon-ETP\t4\n1.753185849\t-5.825839221\tPASRCV\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB,TCRG\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t3\n1.439255576\t4.081914723\tPASRKS\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion, MYB--TCR, ABL1--FXR1\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t11\n4.181595902\t-3.397417008\tPASRLP\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t5\n-1.818238277\t4.901756585\tPASRMM\tNKX2-1\tNKX2-1 Other\tNKX2-1\tGAIN:NKX2-1\tTCRG,TCRD\tGain\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t4\n-1.64110725\t2.188648522\tPASRNF\tTAL1 DP-like\tTAL1 DP-like RPL10\t\t\tTCRB\t\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t2\n-1.585592259\t0.498428703\tPASRPK\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t14\n-1.844457943\t4.825737298\tPASRPV\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 enhancer gain\tTCRB\tEnhancer Gain\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-1.973761697\t0.459170789\tPASRSE\tTAL1 DP-like\tTAL1 DP-like Other\tJAK2\tJAK2--CD99\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t2\n0.286097984\t0.368472666\tPASRSP\tTME-enriched\t\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTME-enriched\t20\tOther\tMale\tNon-ETP\t9\n3.311713319\t1.899353207\tPASRTM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--SATB1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t10\n-2.702238579\t1.562170089\tPASRUK\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--LEF1, TAL1--ADD3\tTCRB\tFusion\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t2\n0.678717475\t0.38754043\tPASRXG\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t6\n-4.068809171\t1.584169567\tPASSEF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t4\n3.751002412\t-2.748174607\tPASSFA\tETP-like\tETV6 ETP-like\tETV6\tETV6--FOXO1\tNo TCR-R\tTranslocation\tETP-like\t9\tOther\tFemale\tNear-ETP\t3\n3.190997224\t2.382981599\tPASSGL\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t9\n1.825597386\t4.445750058\tPASSHC\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t15\n1.693488221\t-5.830524623\tPASSPP\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t9\n-4.4152564\t-1.14977461\tPASSRP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, USP7--TCR\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t4\n-3.556838889\t1.649024785\tPASSSR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t7\n-4.03063168\t1.342943848\tPASSZA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t14\n-3.213296552\t1.304845036\tPASTCH\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t10\n3.818872075\t1.263602555\tPASTDU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t8\n2.294054847\t3.215074599\tPASTHE\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t6\n-3.365655799\t-1.674884617\tPASTJN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-1.859443266\t2.142688573\tPASTLI\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2 enhancer SNV/Indel, RPL10\tTCRB,TCRD\tIntergenic SNV/Indel\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t14\n3.747713189\t1.959823192\tPASTLP\tTLX3\tTLX3 Immature\t\t\tNo TCR-R\t\tTLX3\t5\tTLX3+\tMale\t\t9\n1.765009027\t4.485628903\tPASTLR\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n0.591903548\t0.748023451\tPASTPT\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer, NCOR1--NFIA\tTCRA\tTranslocation\tTME-enriched\t20\tTLX3+\tFemale\tNon-ETP\t4\n-4.11863627\t1.151035488\tPASTXU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tNo TCR-R\tFusion\tTAL1 DP-like\t17\tOther\tFemale\t\t12\n3.989677529\t2.475391925\tPASTZP\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t8\n3.892365556\t-3.019683062\tPASUAI\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR, ETV6--CTNNB1\tTCRG\tTCR-R\tETP-like\t9\tHOXA13+\tFemale\tETP\t7\n2.997939687\t2.598819793\tPASUDN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t24\tNKX2-5+\tMale\tNon-ETP\t6\n2.596925597\t3.037553609\tPASUGC\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t9\n-2.193504174\t1.415381611\tPASUHS\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 Intergenic Loss (RAG2)\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t2\n-1.814848382\t4.8080104\tPASUIN\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t13\n-3.587789197\t1.44242102\tPASUNM\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t16\n-4.028735537\t1.727888406\tPASUSV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t8\n0.258713942\t0.050283656\tPASUWN\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t15\n0.948105197\t-4.507103621\tPASUZU\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t14\n-1.730568964\t2.149076045\tPASVIN\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t7\n-4.139369388\t-1.094918787\tPASVJM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tABL1\tABL1--RANBP2\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n-3.591834207\t-1.621878802\tPASVKC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-3.96918859\t1.018025578\tPASVLD\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-4.052218814\t-0.555284023\tPASVPZ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n-4.311335463\t0.344669015\tPASVRC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer gain, TAL1 enhancer gain\tTCRA,TCRB\tEnhancer Gain\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-1.155311086\t0.656439007\tPASVVA\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t10\n0.061314802\t0.31820041\tPASVVG\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tNKX2-1+\tMale\tNon-ETP\t12\n-3.190740366\t2.028036178\tPASVWH\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t15\n-2.882206459\t1.167373837\tPASVYP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t4\n-3.263089318\t-1.027636229\tPASVZJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t2\n-4.353651662\t0.646232844\tPASWBJ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t14\n2.715925555\t2.814493716\tPASWBV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-3.661919732\t-2.06910032\tPASWBZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TRABD2B, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tTranslocation\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t6\n-4.182226319\t0.743781031\tPASWED\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t7\n3.430747609\t-2.31249684\tPASWFN\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tETP\t11\n-2.352376242\t-1.806137382\tPASWLV\tLMO2 γδ-like\t\tLMO2\tLMO2 enhancer SNV/Indel\tTCRG,TCRD\tIntergenic SNV/Indel\tTAL1 αβ-like\t1\tOther\tMale\tNon-ETP\t5\n0.677955728\t-4.276573836\tPASWNU\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t15\n-4.239092965\t0.670290351\tPASWSR\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t3\n3.669140916\t2.234250844\tPASWWR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t8\n2.216905932\t-4.854599654\tPASWWT\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tFemale\tNear-ETP\t1\n-1.52124678\t1.934423745\tPASWXB\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t9\n0.919468741\t-4.423893153\tPASWXZ\tMLLT10\tMLLT10\tMLLT10\tKMT2A--MLLT10\tNo TCR-R\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\t\t7\n-4.080614705\t2.195649684\tPASWYU\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tRUNX1\tRUNX1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t5\n-0.948424954\t4.073470891\tPASWZJ\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t5\n1.868337016\t-5.684399783\tPASXAL\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t10\n-3.574899096\t-1.311152994\tPASXAY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t13\n3.306046109\t1.595070065\tPASXFB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t7\n2.59450994\t3.060702384\tPASXIL\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t8\n3.206532102\t-2.289149224\tPASXLM\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t6\n3.605623345\t2.043198646\tPASXLT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t4\n1.831053119\t4.455537141\tPASXLZ\tTLX1\t\tTLX1\tTLX1 Intergenic Loss, PECAM1--TCR\tTCRG\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n-3.509169002\t1.507947624\tPASXMF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRA,TCRB\tEnhancer Gain\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t10\n3.790154557\t1.975047649\tPASXPD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t16\n-3.981366296\t0.892377616\tPASXSI\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB,TCRG\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n-3.770714898\t0.42848453\tPASXUC\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNear-ETP\t6\n0.977757793\t-4.522962748\tPASXUL\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t11\n-4.229580541\t-1.125674188\tPASXUU\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t7\n4.10667048\t2.798714936\tPASXVR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t3\n-3.857131619\t-0.956457495\tPASYAJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n3.268621545\t-2.497056901\tPASYCN\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tGAIN:ZFP36L2, LOSS:CDK6\tTCRA,TCRG\tGain\tETP-like\t6\tOther\tMale\tNon-ETP\t10\n-4.364263196\t-1.516890823\tPASYHN\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t17\n4.349817376\t2.437466443\tPASYIS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t8\n3.005886655\t-2.222918212\tPASYKJ\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t7\n3.630917649\t1.108901084\tPASYKT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t5\tTLX3+\tMale\tNear-ETP\t12\n-1.73213901\t4.36344272\tPASYNX\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 Intergenic Loss\tTCRB\tIntergenic Loss\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t2\n-4.183857579\t2.149033845\tPASYSJ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t14\n-2.375471611\t-0.800554633\tPASYSM\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t8\tOther\tMale\tNon-ETP\t15\n1.620133262\t-5.856841266\tPASYSW\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t16\n-2.156612415\t0.633386791\tPASYVU\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, MYC--TCR, TAL1--CCDC102B\tTCRB\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t7\n-4.267482896\t1.80130893\tPASYWF\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t5\n-3.657941956\t0.838784755\tPASZAY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t19\n1.968954425\t4.865027726\tPASZAZ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t15\n0.692638497\t0.433900506\tPASZCF\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t10\n1.471336465\t4.570557893\tPASZEW\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t7\n1.344274383\t-4.013061463\tPASZGL\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t16\tHOXA9+\tFemale\tNon-ETP\t6\n3.41782866\t1.169977367\tPASZIY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t14\n-2.014100332\t-1.170204102\tPASZJW\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--CT45A2\tTCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\tNear-ETP\t29\n3.775902848\t-2.87849754\tPASZKM\tETP-like\tETV6 ETP-like\tETV6\tETV6--ARNT\tNo TCR-R\tFusion\tETP-like\t6\tOther\tFemale\tETP\t3\n2.615538459\t-4.572177588\tPASZMC\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tETP-like\t14\tHOXA9+\tFemale\tETP\t7\n2.067211967\t4.690061391\tPASZPP\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-2.943686266\t1.808571518\tPASZTU\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t12\n2.760685306\t2.896480859\tPATADU\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n1.291713815\t-0.970390081\tPATAHP\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRA,TCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t12\n2.393835645\t-4.081778705\tPATAIE\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t16\n-2.798729796\t1.44562918\tPATALF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--LRRC2, HLF--NCOR1\tTCRB\tFusion\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t12\n2.622883182\t-3.766980111\tPATALJ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t12\n-1.650001008\t2.020084918\tPATASK\tTAL1 DP-like\tTAL1 DP-like RPL10\tMYB\tMYB--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t3\n-3.421205659\t1.516421617\tPATATZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t11\n-1.262570631\t1.061657131\tPATAUC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--RAG1\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tFemale\tNon-ETP\t3\n3.073021989\t2.226805986\tPATAUZ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t11\n-1.22926184\t1.289452494\tPATAXS\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tNo TCR-R\t\tTAL1 DP-like\t19\tHOXA9+\tMale\tNon-ETP\t1\n0.708315353\t-4.32743901\tPATAYT\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t5\n0.65800653\t-4.247286021\tPATBCV\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNear-ETP\t7\n1.947047095\t-5.421898066\tPATBDJ\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t15\n-2.625021715\t1.348123134\tPATBDK\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRA,TCRB\tFusion\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t7\n3.982311349\t-2.783085763\tPATBGC\tETP-like\tETV6 ETP-like\tETV6\tETV6--PDGFRA, TAL1 enhancer SNV/Indel\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tFemale\tETP\t10\n-3.978907008\t1.343380511\tPATBGH\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t11\n1.600863318\t-5.891297042\tPATBNT\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t13\n-2.718046803\t0.523413897\tPATBPY\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, MYC--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t15\n0.846857648\t-4.390279471\tPATBRV\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t8\n-2.564462323\t-0.152131594\tPATBTX\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LOSS:LEF1\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n3.589931588\t-2.448220193\tPATBVE\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--SFPQ\tTCRG,TCRD\tFusion\tETP-like\t6\tOther\tMale\tETP\t14\n-3.696676154\t-1.074349939\tPATBVS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1--CTNND2\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t13\n2.025477271\t4.557938874\tPATBYK\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t16\n2.927214246\t3.000760377\tPATCDZ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t13\n0.087786179\t0.238909543\tPATCEL\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t4\n2.429108958\t2.919477523\tPATCGN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t16\n1.119235377\t-4.16284722\tPATCGT\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tOther\tMale\tNon-ETP\t7\n3.230475049\t-2.523445784\tPATCKV\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA9+\tMale\tETP\t14\n-3.708791394\t-0.982493936\tPATCML\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, PDGFRB--SPDL1\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t9\n2.721123557\t-2.493301331\tPATCNG\tETP-like\tMED12 ETP-like\tMED12\tMED12\tTCRA\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t12\n1.771532159\t-5.786025226\tPATCNI\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t4\n3.544907193\t-3.540992915\tPATCTD\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--CDK6\tNo TCR-R\tFusion\tETP-like\t9\tNKX2-1+\tFemale\tNear-ETP\t7\n-0.976877574\t4.246093572\tPATCTL\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB,TCRD\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t1\n-4.500134845\t1.994329274\tPATCTR\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, LYL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t13\n-3.27200212\t1.419545234\tPATCUK\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tNo TCR-R\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\t\t12\n-3.8323914\t-1.772946536\tPATCWW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n-2.941964645\t1.651051701\tPATCZN\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tFemale\tNon-ETP\t4\n-3.844078202\t1.128572286\tPATDBC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t14\n-4.389210362\t-1.119635999\tPATDBU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t9\n-4.168930669\t0.919030548\tPATDDZ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel, TAL1 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-3.539984364\t-1.361193478\tPATDEK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n0.86012588\t-4.446738421\tPATDFE\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t5\n-1.809743602\t4.734179318\tPATDGZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t2\n0.508060436\t-4.253384292\tPATDKT\tMLLT10\t\t\t\tTCRB\t\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t22\n1.907231193\t4.45826751\tPATDLG\tTLX1\t\tTLX1\tTLX1--TCR\tTCRA,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t11\n4.079464536\t2.067104638\tPATDMN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t6\n2.368830781\t-3.924781262\tPATDRC\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t6\n0.833733659\t0.576160789\tPATDTL\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tNo TCR-R\tTranslocation\tTME-enriched\t20\tOther\tMale\tNon-ETP\t11\n-4.34645452\t2.210600436\tPATDTN\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t1\n-4.049426694\t0.853941858\tPATEAK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, CCND3--ARID5B\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t17\n-1.026411374\t4.236308396\tPATEBX\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t16\n-2.288671513\t0.358221293\tPATEFF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--DHX9\tTCRB\tIntergenic INV\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t6\n-4.065474172\t-1.015049934\tPATEHZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t8\n-3.758196492\t-1.704933822\tPATEIT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 enhancer SNV/Indel\tNo TCR-R\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tFemale\t\t9\n3.713335137\t2.922822059\tPATELJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t4\n3.303087812\t-3.953391015\tPATEMI\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--LNP1\tTCRD\tFusion\tETP-like\t27\tHOXA13+\tFemale\tNear-ETP\t17\n-4.289764066\t-0.9184345\tPATENL\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tMale\tNear-ETP\t3\n-0.774265308\t-0.720893502\tPATETG\tSTAG2/LMO2\t\tLMO2\tLMO2--STAG2\tTCRB\tTranslocation\tRare-Other\t13\tOther\tFemale\tNon-ETP\t1\n2.571924787\t-3.755531489\tPATEUW\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNear-ETP\t7\n4.372698407\t2.009880603\tPATEVG\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t12\n-0.42266192\t0.170529694\tPATEVL\tNKX2-5\t\tNKX2-5\tNKX2-5--BCL11B enhancer\tTCRB\tTranslocation\tRare-Other\t1\tNKX2-5+\tMale\tNon-ETP\t3\n-3.63262095\t-1.69901818\tPATEYS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, RAG2 inversion\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n-3.844813962\t-0.262314274\tPATFAD\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t16\n1.658347945\t-5.876705825\tPATFCV\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNear-ETP\t15\n3.015177827\t-2.499811828\tPATFGZ\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t8\n1.907281976\t4.16061622\tPATFJD\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t2\n-4.345148463\t-1.47584325\tPATFJG\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO1\tLMO1--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tFemale\tNon-ETP\t15\n-4.005140204\t1.973834098\tPATFJP\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t8\n3.631167035\t-4.621883571\tPATFLR\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--TRA\tTCRA\tFusion\tETP-like\t27\tHOXA9+\tMale\tNear-ETP\t12\n0.445225697\t0.697458566\tPATFMG\tTME-enriched\t\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tOther\tMale\tNon-ETP\t14\n-3.899952788\t2.149777949\tPATFPU\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--IGH\tTCRB\tTranslocation\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t4\n5.419366937\t-2.388230025\tPATFRM\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tLMO1+\tMale\tETP\t18\n-3.424157042\t-2.267340838\tPATFUP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t17\n1.880902867\t4.434038938\tPATFVG\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n4.024806123\t-3.381267726\tPATFWF\tETP-like\tRare ETP-like\tHOXB13\tHOXB13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tOther\tMale\tETP\t17\n-1.375288118\t0.725977302\tPATFWZ\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t17\n1.830525498\t4.388004602\tPATFXN\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t7\n1.650125604\t4.226609529\tPATFYZ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tNKX2-1+\tMale\tNon-ETP\t15\n1.852791886\t4.902111352\tPATGBY\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t21\n-2.905092139\t1.573604644\tPATGKE\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t11\n3.834913354\t-3.521589457\tPATGLD\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TENM1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t12\n3.877323728\t2.549622596\tPATGLV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t6\n3.652434926\t-4.516117751\tPATGMJ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t4\n-2.446029921\t1.4572168\tPATGMP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t10\n4.062475305\t1.345536769\tPATGMS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t15\n-3.636743207\t-0.896903753\tPATGVD\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t2\n3.333545308\t1.631626428\tPATGVX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t7\n4.121310811\t-3.413878381\tPATGWP\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t14\n3.675417047\t1.562423409\tPATGXS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t13\n1.979654174\t-5.362257182\tPATGYH\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA13+\tMale\tETP\t16\n3.940857987\t-3.433910787\tPATGZA\tETP-like\tETV6 ETP-like\tETV6\tETV6--CTNNB1\tTCRG\tFusion\tETP-like\t9\tHOXA13+\tFemale\t\t14\n4.251016717\t1.710812867\tPATHAA\tTLX1\t\tTLX1\tTLX1--TCR\tTCRA,TCRG\tTranslocation\tTLX3\t4\tTLX1+\tMale\tNon-ETP\t9\n3.165813546\t-4.042682349\tPATHBG\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1\tTCRG\tFusion\tETP-like\t27\tHOXA13+\tFemale\tETP\t2\n3.305622678\t-4.095015227\tPATHEZ\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tNear-ETP\t11\n-1.881722589\t4.893310369\tPATHFE\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t11\n1.269712071\t-1.025677144\tPATHGY\tSPI1\t\tSPI1\tSPI1--STMN1\tTCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t3\n3.910207849\t-3.565387427\tPATHJF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--SOX4\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tETP\t10\n3.81571732\t-3.282441079\tPATHNI\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tETP\t9\n2.382541995\t2.913136542\tPATHNN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t7\n-3.403945346\t-1.450966298\tPATHRE\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t11\n-3.885951657\t1.992009461\tPATHRF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tTAL2+\tMale\tNon-ETP\t5\n3.555073361\t2.20615989\tPATHSJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t6\n-3.576995988\t-0.787520527\tPATHSL\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t14\n-1.660057206\t4.305092156\tPATHSV\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 Intergenic Loss, ABL1--RANBP2\tTCRB\tIntergenic Loss\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t6\n4.369905572\t2.250109971\tPATHWV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t8\n1.984437327\t-5.51002711\tPATIBE\tKMT2A\tKMT2A\tKMT2A\tKMT2A--TRA\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t11\n3.841062646\t-2.286550223\tPATIBS\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t6\tOther\tFemale\tNon-ETP\t7\n3.380088429\t1.242945612\tPATIFA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--RUNX1, RUNX1--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t5\tTLX3+\tMale\tETP\t23\n2.36349545\t-3.428762137\tPATIFI\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tETP-like\t16\tOther\tFemale\tNon-ETP\t6\n-2.425185699\t1.597538651\tPATIHV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2 Intergenic Loss (RAG2)\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t8\n-3.103919048\t-2.072781979\tPATIKN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t1\n4.272342305\t2.47245437\tPATINY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t14\n2.50434051\t-4.656933963\tPATIPB\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tFemale\tETP\t4\n5.395516973\t-2.431478202\tPATISN\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t12\n2.653017383\t2.904201329\tPATISS\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t9\n-0.215534348\t-3.865782439\tPATITB\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t15\n1.887041431\t4.876993478\tPATITY\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t8\n-3.712762732\t-0.369154244\tPATIWP\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t13\n2.482813697\t-4.025961816\tPATIYA\tETP-like\tRare ETP-like\tMLLT6\tMLLT6--XPO1\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t9\n3.182911019\t2.194951594\tPATJBC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t5\n-2.762793441\t1.029760898\tPATJCZ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t15\n-4.283393998\t-1.107107341\tPATJHK\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t9\n3.473578553\t1.946298898\tPATJJW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t11\n4.219398599\t2.713033259\tPATJKF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t3\n-3.477329392\t-1.534156858\tPATJLT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL2\tTAL2--TCR, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tTAL2+\tMale\tNear-ETP\t12\n-4.352965732\t2.118044913\tPATJLY\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t13\n3.500229459\t-4.465728938\tPATJRD\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tETP\t20\n-1.912514825\t2.073131621\tPATJRX\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t8\n-3.560744901\t-2.164919555\tPATJXW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t8\n0.963974099\t-4.53500241\tPATJZK\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t18\n2.419211488\t3.055426658\tPATKGP\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t10\n-2.327639956\t1.018646658\tPATKHZ\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t12\n-3.480458875\t-0.480978846\tPATKIH\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t12\n-4.238805671\t-0.452125668\tPATKKV\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t16\n0.651981692\t0.291633308\tPATKLW\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t16\n-2.308235784\t2.044828475\tPATKNX\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10\tTCRG\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t10\n-3.794490476\t-1.555428326\tPATKPW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t1\n-3.381821532\t-2.305100858\tPATKPY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t15\n3.601647954\t1.506027401\tPATKRF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t7\n4.329841714\t1.960543216\tPATKTY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t14\n-4.38748445\t2.165937961\tPATKVD\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t2\n1.695282559\t4.870086492\tPATKVH\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n1.586906295\t-5.9131729\tPATKVR\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t3\n-1.294572559\t4.329524816\tPATKWU\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB,TCRD\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t13\n3.802318673\t-3.390973508\tPATKXN\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--CDK6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t16\n2.992712121\t-4.255203902\tPATKYI\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--PSIP1\tNo TCR-R\tFusion\tETP-like\t14\tHOXA13+\tMale\t\t20\n-2.306872148\t1.124729217\tPATKZH\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t6\n2.756799798\t-3.479685485\tPATLAC\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tTCRG\tFusion\tETP-like\t9\tOther\tMale\tETP\t8\n1.884995322\t-5.627433001\tPATLEE\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tNo TCR-R\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t8\n3.230062108\t2.045040906\tPATLGU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t7\n2.373020272\t-4.632343947\tPATLHH\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--MLLT6\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tMale\tNon-ETP\t7\n1.443189721\t4.839591325\tPATLHS\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t10\n0.200839262\t0.011677076\tPATLIL\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tHOXA9+\tMale\tETP\t11\n-3.604749818\t2.042087615\tPATLLH\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1 enhancer SNV/Indel, TCR-R\tTCRB,TCRD\tIntergenic SNV/Indel\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t2\n0.776377301\t-4.3204481\tPATLMA\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRA,TCRG\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t8\n-0.827642758\t4.098357976\tPATLNS\tNKX2-1\tNKX2-1 Other\tMYB\tMYB--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t26\tOther\tFemale\tNon-ETP\t2\n-1.593860735\t1.019721211\tPATLNZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t9\n-3.582794328\t2.165466607\tPATLPN\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t2\n-3.106405039\t1.197262109\tPATLRW\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t2\n1.411617856\t4.624474824\tPATLRZ\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t13\n-3.010619659\t-1.830078899\tPATLUU\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n1.771940808\t-5.737049758\tPATLWX\tNUP98\tNUP98\tNUP98\tNUP98--KDM5A\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t12\n1.560828071\t4.083906472\tPATLZK\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tTLX1+\tMale\tNon-ETP\t19\n3.920498948\t-3.735387027\tPATMAF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tETP-like\t5\tTLX3+\tMale\tETP\t16\n-3.153789182\t1.315815747\tPATMCX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t11\n-1.405163635\t1.23740536\tPATMEN\tTAL1 DP-like\tTAL1 DP-like Jak\tBMI1\tCOMMD3--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tHOXA9+\tFemale\tNon-ETP\t2\n3.851367574\t-4.226156413\tPATMIL\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET, LMO2 Intergenic Loss (CAPRIN1)\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tETP\t19\n2.61393724\t-3.669532954\tPATMPM\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t17\n3.357086282\t-2.169841945\tPATMRE\tETP-like\t\t\t\tTCRA,TCRG\t\tETP-like\t6\tOther\tMale\tNear-ETP\t6\n1.507346969\t-4.825601279\tPATMTV\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t11\n-3.616881509\t0.672503651\tPATMVH\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t18\n3.619086366\t-2.924103677\tPATMXN\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--SATB1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t14\n3.568965058\t1.215524018\tPATMYZ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tETP\t12\n-4.075193543\t-1.394596874\tPATNAM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, CD99--JAK2\tTCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t2\n3.505747895\t1.32205385\tPATNIA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRG,TCRD\tTCR-R\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t6\n-0.776426573\t-0.720356702\tPATNIE\tSTAG2/LMO2\t\tLMO2\tLMO2--STAG2\tTCRG,TCRD\tTranslocation\tRare-Other\t13\tOther\tMale\tNear-ETP\t1\n3.866205316\t-3.28547734\tPATNNF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t13\n-3.490384002\t-0.985207974\tPATNYN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t11\n1.482657533\t4.736740411\tPATPBW\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t13\n-3.359664102\t1.006103933\tPATPDA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (intergenic)\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t2\n1.98558722\t4.446472943\tPATPGE\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t19\n-4.085671563\t-1.192037045\tPATPWF\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL2\tTAL2--TCR, LMO1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tTAL2+\tMale\tNon-ETP\t1\n2.410742383\t3.024100841\tPATPXS\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t11\n-3.838701625\t1.499366463\tPATRAB\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t4\n2.383032899\t-3.905851066\tPATRAP\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tETP\t7\n3.502442937\t1.999327958\tPATRDL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t10\n-4.342645783\t-0.121831312\tPATRFD\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t6\n-1.853551168\t1.611210406\tPATRGV\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2—FOXJ3, STAG2 (intronic_Indel;VAF:0.38)\tTCRB,TCRG\tTranslocation\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t1\n1.502832036\t4.580837071\tPATRHL\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n1.639416318\t-5.824005782\tPATRJL\tKMT2A\tKMT2A\tKMT2A\tKMT2A--DOT1L\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t3\n2.379376273\t2.979972184\tPATRKV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t13\n-2.945629139\t1.920672715\tPATRNA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR, ABL1--MBNL1\tTCRB\tTCR-R\tTAL1 DP-like\t2\tTAL2+\tMale\tNon-ETP\t2\n2.973975282\t-2.31855148\tPATRNH\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRD\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n3.36637507\t1.093308986\tPATRTG\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tETP-like\t5\tTLX3+\tMale\tNon-ETP\t5\n2.700627904\t2.896215976\tPATRUN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t4\n1.851701598\t4.59109813\tPATRXL\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n1.601182323\t-5.916339099\tPATRXZ\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t14\n4.134449105\t2.748094619\tPATSCP\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t4\n-3.249834437\t2.235735\tPATSDS\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB,TCRD\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNear-ETP\t14\n2.880474191\t2.327431739\tPATSEZ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t7\n4.23260222\t1.827434481\tPATSHF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t14\n-3.164638061\t-1.157960832\tPATSIL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer gain, LMO1 enhancer SNV/Indel\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tLMO1+\tMale\tNon-ETP\t15\n3.733808618\t2.134419025\tPATSIY\tTLX3\tTLX3 DP-like\t\t\tNo TCR-R\t\tTLX3\t24\tTLX3+\tMale\t\t9\n1.418135982\t4.283243478\tPATSIZ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t7\n3.218297105\t1.922523678\tPATSJM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t3\n-2.694482226\t1.396521509\tPATSJU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t3\n-1.197047614\t4.087248147\tPATSLH\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t2\n-4.411765475\t2.170488179\tPATSPG\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t7\n-3.650036235\t-1.004808664\tPATSPK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t2\n-4.609507222\t-0.847360014\tPATSRU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t16\n-3.392775197\t-1.49619919\tPATTAC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n3.638662915\t-4.572779834\tPATTDP\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t27\n3.28927527\t1.965220988\tPATTHM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t7\n3.169921498\t-2.636768996\tPATTHR\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--SFPQ\tTCRG,TCRD\tFusion\tETP-like\t6\tOther\tMale\tNon-ETP\t16\n-0.89904349\t4.022982896\tPATTIG\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t8\n3.881195169\t1.877196849\tPATTJY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t5\n3.752432447\t2.736839831\tPATTKX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t8\n-1.600056697\t-1.979499876\tPATTTE\tLMO2 γδ-like\t\tEIF4E3\tFOXP1/EIF4E3-HUS1\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tOther\tMale\tNear-ETP\t10\n3.175363164\t-2.348074376\tPATTWG\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t8\n3.743623834\t2.89388901\tPATTXC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n-4.099243064\t1.539204181\tPATUDM\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n-0.885183324\t4.13501817\tPATUWK\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRD\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t1\n3.813323598\t-3.643859565\tPATUZU\tETP-like\tRare ETP-like\tRUNX1\tRUNX1--AFF3\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tFemale\tETP\t13\n0.221937041\t0.094238841\tPATVDA\tTME-enriched\t\tNKX2-1\tNKX2-1--CDK6\tNo TCR-R\tTranslocation\tTME-enriched\t20\tNKX2-1+\tFemale\tNon-ETP\t2\n-2.038195987\t0.221320451\tPATVDU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain, LCK--TCR\tTCRG,TCRD\tFusion\tTAL1 DP-like\t7\tOther\tMale\tNon-ETP\t12\n4.301407914\t2.394897521\tPATVNY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t9\n-3.954394479\t1.21807021\tPATVTZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t17\n3.896611314\t2.129495681\tPATWHB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t10\n3.633965592\t2.717741311\tPATWIE\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t5\n2.585273604\t3.194495738\tPATWIJ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t14\n-1.886150498\t1.757721365\tPATWJU\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, MYB--TCR\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t5\n-0.911434848\t4.161227525\tPATWNL\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n-3.152184863\t1.456822455\tPATWXC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t15\n-4.100722451\t-1.019893407\tPATWYL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t15\n-1.807359059\t4.783243478\tPATWYZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-2.449853082\t-0.533825159\tPATXAL\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRD\tFusion\tTAL1 αβ-like\t8\tHOXA13+\tMale\tNon-ETP\t15\n5.380539041\t-2.424769103\tPATXKW\tBCL11B\t\tBCL11B\tBCL11B enhancer translocation\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t18\n2.945124726\t-4.260420978\tPATXKY\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--CBL\tTCRG\tFusion\tETP-like\t14\tHOXA13+\tMale\tETP\t10\n2.606088977\t-4.33740729\tPATXNG\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--PICALM\tTCRD\tFusion\tETP-like\t14\tOther\tMale\tNear-ETP\t16\n-3.958391805\t-1.368350923\tPATXNK\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t9\n-4.089320083\t1.961182774\tPATXNR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tNo TCR-R\tFusion\tTAL1 DP-like\t18\tOther\tFemale\t\t17\n-1.892853816\t4.874894441\tPATXSD\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t11\n1.503020625\t4.859400571\tPATXSK\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n3.09303246\t1.472699941\tPATXTA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, ETV6--FRK\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t3\n-2.060729761\t-0.011794537\tPATXTC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t15\n2.839192014\t-2.335903584\tPATXTY\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tOther\tMale\tNear-ETP\t7\n-2.084472437\t1.939109386\tPATYCH\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t3\n3.166810136\t-2.606984794\tPATYJK\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tHOXA9+\tMale\t\t12\n2.020271401\t-5.288754165\tPATYJU\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB,TCRG\tFusion\tKMT2A\t23\tNKX2-1+\tMale\tETP\t4\n-2.805033822\t1.383424223\tPATYMP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t18\n-4.190527577\t-1.357018172\tPATYWV\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t7\n1.382184129\t-4.670550048\tPATYYJ\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN, CCND2--TCR\tTCRG\tFusion\tHOXA9 TCR/MLT10\t12\tNKX2-1+\tFemale\tNon-ETP\t16\n-1.82190295\t4.657573045\tPATZFF\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t10\n-4.188579698\t1.043470085\tPATZSL\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t10\n-4.417132277\t0.435112149\tPATZST\tTAL1 DP-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t11\tOther\tFemale\tNon-ETP\t11\n1.776334624\t4.316033662\tPATZVD\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-0.086451788\t-3.967214763\tPATZWA\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t10\n3.470571141\t-2.258834779\tPATZWM\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tOther\tMale\tNear-ETP\t14\n-2.099619586\t0.591924847\tPATZXK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR, MYC--TCR, LMO2--CELF1\tTCRB\tIntergenic Loss\tTAL1 DP-like\t8\tTAL2+\tMale\tNon-ETP\t7\n1.639408212\t-4.701196849\tPATZXL\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNear-ETP\t10\n1.192000966\t-4.149282157\tPATZYC\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t3\n2.44673882\t3.151536048\tPATZYE\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t19\n-1.884451945\t4.761945546\tPATZYR\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t8\n4.293193917\t2.547728837\tPAUACG\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1, JAK2--PCM1\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t4\n-3.832530637\t-0.822320043\tPAUADY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t15\n-3.381605763\t2.368447126\tPAUAFN\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t3\n-4.243407149\t1.705697001\tPAUAIZ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, NOTCH1--BCL11B enhancer\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t11\n3.088663201\t-4.175212085\tPAUAJA\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--ELL\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\t\t11\n-1.068757985\t4.301798165\tPAUAKN\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRG,TCRD\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t1\n-2.526817698\t1.026092828\tPAUAMR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t9\n-2.816838045\t1.141143501\tPAUANG\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t5\n-1.840295989\t1.296989501\tPAUASK\tNKX2-5\t\tNKX2-5\tNKX2-5--NME enhancer, GHR--BCL11B enhancer\tTCRB\tTranslocation\tNKX2-1\t26\tNKX2-5+\tMale\tNon-ETP\t3\n-2.928829451\t1.498853505\tPAUAVW\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2 Intergenic Loss (CAPRIN1), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t3\n2.35726748\t3.146668017\tPAUAXI\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t11\n4.038630586\t2.839085877\tPAUAYB\tTLX3\tTLX3 Immature\t\t\tNo TCR-R\t\tTLX3\t4\tTLX3+\tMale\t\t18\n-2.878226538\t1.708308995\tPAUAZV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t8\n-2.825784225\t1.467107952\tPAUBBJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t10\n3.695473294\t1.512826384\tPAUBBN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t4\n-3.141695638\t1.802925528\tPAUBCB\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LMO2 Intergenic Loss (RAG2)\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t15\n1.69662271\t4.192104638\tPAUBCT\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRA,TCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t13\n-4.022198577\t1.187874377\tPAUBDM\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n-3.4138905\t1.240325034\tPAUBGA\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t9\n-3.364616055\t1.520231903\tPAUBGT\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t14\n3.159664731\t2.069867433\tPAUBLL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t7\n3.827664952\t-2.388981997\tPAUBPY\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRG\tTCR-R\tETP-like\t6\tOther\tMale\tNon-ETP\t11\n-4.228886743\t-1.155179917\tPAUBRD\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t4\n-1.079397981\t4.32759887\tPAUBTC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--HMGB1\tTCRB\tTranslocation\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n-4.316408057\t-1.589957654\tPAUBXP\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t8\n1.85846911\t-5.730867564\tPAUCAS\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t2\n-1.852085967\t4.890561402\tPAUCCG\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t2\n-3.506122727\t-2.13572663\tPAUCDC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, CDKN2A--TCR\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t16\n5.430130105\t-2.39215821\tPAUCDY\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t9\n2.097190242\t4.250316918\tPAUCFA\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-2.408721108\t-1.212369501\tPAUCFC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t7\tOther\tMale\tNon-ETP\t18\n3.561532121\t-3.576078116\tPAUCFL\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t7\n1.550702672\t-4.568515002\tPAUCIB\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\tNon-ETP\t2\n1.493116717\t4.144312203\tPAUCIS\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRA,TCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n-3.679201026\t-1.713445007\tPAUCIZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tLMO1 enhancer SNV/Indel, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t3\n-1.642959226\t-1.949854552\tPAUCKE\tLMO2 γδ-like\t\tMYC\tMYC--TCR\tTCRG,TCRD\tTCR-R\tRare-Other\t1\tOther\tFemale\tNear-ETP\t9\n-3.711692471\t0.328448803\tPAUCRG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tNo TCR-R\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n3.52908812\t-3.635759055\tPAUCVB\tETP-like\t\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t17\n2.041146855\t-5.143746554\tPAUCWD\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tNo TCR-R\tFusion\tKMT2A\t23\tOther\tFemale\tNon-ETP\t11\n3.848242383\t-2.355412661\tPAUCWP\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--GALR2\tTCRG\tFusion\tETP-like\t6\tOther\tFemale\tNear-ETP\t14\n4.152605634\t2.429027618\tPAUDBF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tETP\t4\n2.831692319\t-4.122676074\tPAUDHH\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--CBL\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tMale\tETP\t18\n-3.992094178\t0.955683411\tPAUDPH\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t17\tOther\tFemale\tNear-ETP\t3\n0.701215606\t1.107469023\tPAUDUS\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTME-enriched\t20\tTLX3+\tFemale\tNon-ETP\t4\n-2.383079905\t1.551865519\tPAUDVG\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tNKX2-1+\tMale\tNon-ETP\t7\n-1.783046682\t4.679283441\tPAUEDT\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t7\n-0.378087361\t0.067184881\tPAUEFL\tNKX2-5\t\tNKX2-5\tNKX2-5--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tRare-Other\t1\tNKX2-5+\tFemale\tNon-ETP\t3\n4.061103444\t2.348344863\tPAUEFT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t10\n-0.178997297\t-0.03530674\tPAUEGE\tNKX2-5\t\tNKX2-5\tNKX2-5--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tRare-Other\t1\tNKX2-5+\tFemale\tNon-ETP\t2\n-4.36011066\t-1.075988948\tPAUEGI\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t8\n-3.227000375\t-1.930764615\tPAUEIL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t17\n-4.330678363\t1.458292664\tPAUEJV\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t9\n3.458875279\t-2.239619433\tPAUELB\tETP-like\tRare ETP-like\tTXNL4B\tTXNL4B--SFPQ, ITCH--SAMHD1\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tNear-ETP\t8\n1.433153253\t4.043920816\tPAUEPU\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-3.865456243\t1.579734624\tPAUETF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t25\n-4.292815347\t1.997468532\tPAUEUC\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t14\n-1.11134677\t4.385051549\tPAUEVJ\tNKX2-1\tNKX2-1 Other\tMYB\tMYB--TCR, NKX2-1 Intergenic Loss\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n4.223284822\t1.833579481\tPAUEWR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t15\n-3.499317307\t-1.776812493\tPAUEXN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, LMO1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t15\n3.074481587\t-2.339137732\tPAUEYF\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t12\n4.115215402\t2.120553077\tPAUEZV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t17\n3.92031775\t-3.09118694\tPAUEZX\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t4\n2.013171296\t-5.345193088\tPAUFAH\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNear-ETP\t9\n3.678826432\t-4.510736644\tPAUFAM\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--CEP295\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA13+\tFemale\tETP\t17\n-1.473771174\t4.294802964\tPAUFBJ\tNKX2-1\tNKX2-1 TCR\t\t\tTCRB\t\tNKX2-1\t15\tOther\tMale\tNon-ETP\t2\n3.581821542\t-3.055838048\tPAUFBK\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t9\tOther\tMale\t\t8\n-3.296495814\t2.302425445\tPAUFFN\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t14\n-1.677531351\t0.585139514\tPAUFGV\tTAL1 DP-like\tTAL1 DP-like Other\t\t\tTCRB\t\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t23\n-0.089776058\t-3.938290297\tPAUFHR\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA13+\tMale\tNon-ETP\t8\n3.185219388\t-4.052128016\tPAUFKM\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t10\n3.847253423\t-3.156726539\tPAUFZC\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t10\n4.147993665\t-3.361042916\tPAUFZI\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t4\n-3.126805325\t-1.404934227\tPAUGAA\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t9\n-4.335637946\t0.695893884\tPAUGAP\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n-3.996487994\t0.025934235\tPAUGBG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n2.973780732\t-2.40564388\tPAUGCE\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tOther\tFemale\tETP\t13\n1.7543963\t4.257708371\tPAUGDT\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t12\n-4.152743239\t-0.188456147\tPAUGDZ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t16\n-0.148520608\t-3.878521621\tPAUGEJ\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t9\n-0.16456594\t-3.891924083\tPAUGEP\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t17\n-1.645065297\t4.320905507\tPAUGFN\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t11\n-3.319339414\t2.210207761\tPAUGLK\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t13\n-3.827615399\t-0.181524082\tPAUGLY\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n-3.517261643\t1.515049637\tPAUGPY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n-3.356675286\t2.22524649\tPAUGTY\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t3\n1.301950078\t-1.008442878\tPAUGVW\tSPI1\t\tSPI1\tSPI1--YWHAE\tTCRB\tFusion\tRare-Other\t10\tOther\tFemale\tNon-ETP\t3\n-2.765872736\t-1.611311376\tPAUGXW\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--BCL11B enhancer\tTCRG\tTranslocation\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t7\n3.875934701\t-2.473807513\tPAUHAF\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tGAIN:ZFP36L2\tNo TCR-R\tIntragenic Gain\tETP-like\t6\tHOXA13+\tMale\tETP\t22\n-4.277864833\t0.664920033\tPAUHDN\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n-4.178836007\t0.920933605\tPAUHHF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t21\n-1.028441046\t4.296202005\tPAUHJR\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 Intergenic Loss\tTCRB,TCRG\tIntergenic Loss\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t2\n-3.812974591\t1.733559907\tPAUHPC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t13\n0.237599592\t-4.088372409\tPAUHRP\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t5\n-4.12804832\t-0.458253115\tPAUHTB\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t9\n2.018786292\t-5.066781699\tPAUHWY\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tMale\tETP\t8\n-4.125509877\t0.777755261\tPAUHYI\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t3\n1.782534699\t4.741636575\tPAUIAW\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t23\n0.183909397\t0.178218768\tPAUIBA\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t10\n3.854785543\t-3.340943515\tPAUIDF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MSI2\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t5\n-1.480834801\t1.447773278\tPAUIEM\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\t\t\tTCRG\t\tTAL1 DP-like\t8\tNKX2-1+\tMale\tNon-ETP\t14\n-3.807353635\t1.166737855\tPAUIFA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t11\n-0.804599602\t-0.766916453\tPAUIFC\tSTAG2/LMO2\t\tLMO2\tLMO2--STAG2\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tHOXA9+\tMale\tNon-ETP\t2\n2.598525147\t3.051159442\tPAUIFR\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t3\n-1.424263556\t-1.940145909\tPAUIGB\tLMO2 γδ-like\t\tLMO2\tLMO2--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tOther\tFemale\tNon-ETP\t13\n1.496347528\t4.309388936\tPAUIGD\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-4.208338399\t0.340639085\tPAUIMK\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL1 enhancer gain\tTCRA,TCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tFemale\tNon-ETP\t9\n1.822556596\t-5.642604052\tPAUIPF\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t10\n-4.494512696\t-0.348983257\tPAUIRF\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t2\n3.332824807\t-2.44206947\tPAUISV\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tNo TCR-R\tTCR-R\tETP-like\t6\tOther\tMale\tETP\t8\n-1.480127056\t0.810398102\tPAUITE\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t17\n1.486542325\t4.839571775\tPAUIVD\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB,TCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t15\n2.749983888\t2.842994273\tPAUIXW\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t8\n4.177642446\t2.627893031\tPAUJDD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n2.58522449\t-4.503521621\tPAUJDN\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRD\tFusion\tETP-like\t14\tHOXA9+\tFemale\tETP\t6\n-3.318713326\t-2.15564388\tPAUJID\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, MYC--TCR, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNear-ETP\t12\n0.21899889\t0.039922946\tPAUJJI\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t7\n3.615385633\t1.950836838\tPAUJNY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t22\n-3.685273786\t-1.947871029\tPAUJRU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-4.144342799\t-0.437311977\tPAUJSH\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t9\n3.58107863\t-3.056536853\tPAUJTE\tETP-like\tETV6 ETP-like\tETV6\tETV6--HOXB13\tNo TCR-R\tFusion\tETP-like\t9\tOther\tMale\tNear-ETP\t13\n0.307061176\t0.259165317\tPAUJVC\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNear-ETP\t5\n3.089037519\t1.633903921\tPAUJVJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t5\n-1.890059073\t4.824774564\tPAUJVL\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t4\n-1.929973502\t0.490832687\tPAUJXZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t17\n1.473759513\t4.806399167\tPAUJYG\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-4.08606257\t-0.668081879\tPAUJYN\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t14\n2.829946141\t-3.576267898\tPAUKBE\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNear-ETP\t13\n-1.67369913\t-1.94152671\tPAUKDP\tLMO2 γδ-like\t\t\t\tTCRG,TCRD\t\tRare-Other\t1\tOther\tFemale\tNon-ETP\t7\n-0.851108272\t4.195062936\tPAUKIF\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n4.332657914\t2.090025008\tPAUKIZ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t5\n2.547902684\t-3.792676866\tPAUKMA\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t17\n5.376353364\t-2.45019406\tPAUKMK\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t13\n-0.142885585\t-3.921518027\tPAUKTD\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR, NUP214--ABL1\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t17\n-4.633938689\t-0.442217379\tPAUKWJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t9\n-1.626242567\t4.459292234\tPAUKYJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-3.319752831\t0.875249267\tPAUKZJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n1.736868243\t4.45145017\tPAUKZU\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB,TCRD\tIntergenic INV\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-1.126966116\t4.256858171\tPAULCK\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--SATB1\tTCRB\tIntergenic INV\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t17\n1.898484092\t-5.379617392\tPAULGP\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tNo TCR-R\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t11\n-4.150609393\t0.867542387\tPAULGR\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t6\n-4.266885657\t1.981080354\tPAULGX\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t6\n0.751689892\t-4.323893725\tPAULIU\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tOther\tMale\tNear-ETP\t13\n2.321175437\t-4.609919249\tPAULMU\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--ZDHHC3\tTCRG,TCRD\tFusion\tETP-like\t14\tNKX2-1+\tFemale\tNon-ETP\t4\n-0.098436971\t-3.891218602\tPAULMW\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR, PHF6--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t9\n4.013901811\t-3.429645955\tPAULRC\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t5\n-4.361364264\t2.146513045\tPAULZF\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, PTEN--TRA, LYL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t16\n4.489842038\t2.355995954\tPAULZV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tETP\t14\n1.967996459\t4.744982064\tPAUMAV\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t13\n-1.677395899\t2.031103194\tPAUMDM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTAL1 DP-like\t19\tHOXA9+\tFemale\tNon-ETP\t13\n-3.276528735\t1.400816143\tPAUMHZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t6\n-1.919965584\t4.946687997\tPAUMIB\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-3.770388026\t1.919246972\tPAUMKL\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t18\n-3.586062331\t-0.618135809\tPAUMKW\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain, ABL1--PRPF19\tTCRA,TCRB,TCRG\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t19\n0.770772557\t-4.423225104\tPAUMLV\tMLLT10\tMLLT10\tMLLT10\tMLLT10--KMT2A\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t13\n-2.871818085\t-1.535695373\tPAUMLX\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tTCRA\t\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t11\n-4.265936751\t1.002761663\tPAUMNE\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t11\n3.054166894\t-2.598993718\tPAUMVW\tETP-like\t\t\t\tTCRA,TCRG\t\tETP-like\t6\tOther\tMale\tETP\t14\n-3.46880259\t-1.406177937\tPAUMXB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t10\n1.979354005\t4.639661134\tPAUNBU\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t14\n3.286816697\t-2.635718047\tPAUNDK\tETP-like\tETV6 ETP-like\tETV6\tETV6--PDGFRA\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tMale\tETP\t8\n-2.700530906\t0.703213394\tPAUNTS\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t12\n3.784095387\t-3.306913077\tPAUNVM\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t12\n-3.61591496\t-1.944041669\tPAUNXN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t11\n3.046265225\t-2.276545464\tPAUNZE\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n3.239295106\t-2.014626681\tPAUNZI\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tAMP:ZFP36L2\tNo TCR-R\tGain\tETP-like\t6\tOther\tMale\tNear-ETP\t13\n2.922896009\t1.345068515\tPAUPEZ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRA,TCRG\tTCR-R\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t4\n-2.220131416\t1.463047922\tPAUPFF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t11\n1.943043094\t4.940847695\tPAUPHP\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t17\n4.113169293\t1.703083814\tPAUPIV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t9\n3.736379724\t2.883603156\tPAUPJB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n3.35105\t1.137451828\tPAUPKL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t7\n-1.723467429\t0.794057251\tPAUPLV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRA,TCRB,TCRG\tTCR-R\tTAL1 DP-like\t8\tTAL2+\tMale\tNon-ETP\t8\n2.372032743\t-3.824991166\tPAUPTX\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t9\n3.186192613\t2.037308515\tPAUPUI\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t16\n-2.032199342\t2.237266601\tPAUPUW\tTAL1 DP-like\tTAL1 DP-like RPL10\tMYB\tMYB--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t2\n-0.340810556\t0.02919291\tPAUPVR\tNKX2-5\t\tNKX2-5\tNKX2-5--TCR\tTCRB\tTCR-R\tRare-Other\t1\tNKX2-5+\tFemale\tNon-ETP\t2\n1.610067945\t-5.910264193\tPAUPXU\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t11\n2.264491658\t-3.908939778\tPAURCM\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t21\n0.752689581\t-4.316930949\tPAURFC\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t5\n-2.962206264\t1.482342661\tPAURGS\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel, CCND2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t13\n3.305654149\t-4.15717858\tPAURIX\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tFemale\tETP\t17\n3.634214978\t-4.589627444\tPAURLC\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tFemale\tETP\t10\n2.375515323\t2.377794803\tPAURLR\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t4\n-3.934867759\t1.350112856\tPAURLU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t6\n2.35690866\t3.000683129\tPAURPE\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t3\n-4.038150926\t1.345158876\tPAURSX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t16\n-1.854242105\t4.865824521\tPAURTD\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t8\n3.697777371\t2.906370938\tPAURVF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n0.289590817\t0.659063876\tPAURVK\tTME-enriched\t\tNOTCH1\tNOTCH1--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tNKX2-5+\tMale\tNon-ETP\t8\n3.592502694\t-4.612711608\tPAURXZ\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t15\n3.883658509\t-3.505851209\tPAURZK\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--ETV6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t10\n2.963107209\t-4.202685534\tPAUSBN\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1\tNo TCR-R\tFusion\tETP-like\t14\tHOXA13+\tMale\tNear-ETP\t19\n3.550573449\t-4.673772513\tPAUSDN\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRB,TCRG\tFusion\tETP-like\t27\tHOXA9+\tMale\tNear-ETP\t17\n3.614879231\t-4.622746169\tPAUSDP\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t14\n3.124911408\t1.554248632\tPAUSDW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t5\n-1.779215832\t2.168144286\tPAUSEY\tTAL1 DP-like\tTAL1 DP-like RPL10\tMYB\tMYB--TCR, LMO2 enhancer SNV/Indel, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t15\n3.120647054\t-4.167552173\tPAUSGB\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--ELL\tTCRG\tFusion\tETP-like\t14\tHOXA13+\tMale\tNear-ETP\t17\n0.529229264\t0.442771346\tPAUSIC\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tNo TCR-R\tTranslocation\tTME-enriched\t20\tOther\tMale\tNon-ETP\t5\n-3.150656362\t1.427738131\tPAUSIS\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer gain, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t6\n-1.802332242\t-1.919644415\tPAUSLR\tLMO2 γδ-like\t\t\t\tTCRG,TCRD\t\tRare-Other\t1\tOther\tFemale\tNon-ETP\t2\n3.28253613\t-2.721368968\tPAUSNW\tETP-like\tETV6 ETP-like\tETV6\tETV6--LEUTX\tTCRG\tFusion\tETP-like\t6\tOther\tFemale\tNon-ETP\t5\n3.678670507\t-3.190535962\tPAUSNZ\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR, RBFOX1--TCR\tTCRG\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t5\n0.773077111\t0.48647672\tPAUSPD\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNear-ETP\t7\n-3.63422503\t1.405490339\tPAUSPZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 Intergenic Loss (RAG2)\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t21\n4.129496198\t-3.34374088\tPAUSTY\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--APAF1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t2\n1.855684381\t4.453671277\tPAUTBB\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t8\n-3.463822741\t2.068052352\tPAUTBD\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel, ABL1--LPP\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t6\n3.400985818\t1.81735462\tPAUTBM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t8\n-2.155585725\t2.207267345\tPAUTEF\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2 enhancer SNV/Indel, RPL10\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t16\n-4.175371547\t1.92794019\tPAUTIV\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LMO2 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t10\n-0.077782412\t-4.003870665\tPAUTJL\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB,TCRG\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNear-ETP\t13\n1.86120687\t-5.688969314\tPAUTKK\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t12\n-2.463405747\t2.184663833\tPAUTLJ\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2 enhancer SNV/Indel, RPL10\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t6\n0.950852733\t-4.485946357\tPAUTRX\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t21\n2.575747352\t-3.523843944\tPAUTRY\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNear-ETP\t3\n2.341927629\t3.237408221\tPAUTSB\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t13\n-4.347781081\t-1.238998591\tPAUTUL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel, CDKN2A--TCR\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t4\n-4.289318461\t0.921568752\tPAUTWN\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t6\n-4.477932591\t-1.228337228\tPAUTZD\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t2\n3.566708188\t-2.504697978\tPAUTZR\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--NONO\tTCRA,TCRG\tFusion\tETP-like\t6\tOther\tMale\tETP\t17\n-4.267333646\t1.411050976\tPAUUAL\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t15\n-1.950674016\t4.93250686\tPAUUAV\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB,TCRG\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t15\n-1.306906175\t4.328672708\tPAUUBG\tNKX2-1\tNKX2-1 Other\tMYB\tMYB--TCR, NKX2-1 Intergenic Loss\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t16\n2.089186053\t-4.993492782\tPAUUCS\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tFemale\tNear-ETP\t3\n-4.533393998\t-1.22228533\tPAUUCY\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t9\n1.392230372\t4.703748048\tPAUUET\tTLX1\t\t\t\tNo TCR-R\t\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t8\n-1.902784247\t4.895083249\tPAUUIK\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-1.557946701\t-1.986397921\tPAUUPM\tNUP98\tNUP98\tNUP98\tNUP98--TNRC18, MED12\tTCRG,TCRD\tFusion\tRare-Other\t1\tOther\tFemale\tNear-ETP\t6\n-3.466292281\t-1.816748559\tPAUUSY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, PTEN--TRA\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n2.906030755\t-3.811521232\tPAUUTD\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t13\n-0.148334761\t-3.92904514\tPAUUTU\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t6\n3.104847055\t-2.142245471\tPAUUXK\tETP-like\tMED12 ETP-like\tMED12\tMED12, RAD23B--TRA\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t5\n-2.965499659\t-1.576112449\tPAUUXR\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, PTEN--TRA\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n0.782650571\t-4.403367698\tPAUUYI\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA13+\tMale\tNon-ETP\t15\n3.185818772\t-2.99324268\tPAUUZY\tETP-like\tETV6 ETP-like\tETV6\tETV6--MBTPS2\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tETP\t15\n-4.13307776\t1.330524266\tPAUVAJ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t18\tLMO1+\tMale\tNon-ETP\t5\n-1.938737292\t1.030226648\tPAUVFE\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t4\n5.377287011\t-2.450470864\tPAUVHB\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tFemale\tETP\t15\n2.263697486\t3.051912606\tPAUVHP\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t5\n4.046478372\t1.81326598\tPAUVLV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t7\n4.085046392\t1.811561049\tPAUVPA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n-2.112094302\t0.923044026\tPAUVSC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t1\n-3.730732341\t1.264077366\tPAUVTP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t16\n-3.542877574\t-2.273526847\tPAUVUJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-3.433857818\t-1.528069078\tPAUVWZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t2\n1.768513303\t4.498163999\tPAUVYF\tTLX1\t\tTLX1\tTLX1--TCR, JAK2--TRA\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t11\n3.162375073\t1.533170164\tPAUVZI\tTLX3\tTLX3 Immature\t\t\tTCRB\t\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t7\n3.353767495\t-1.922150909\tPAUWKJ\tETP-like\tRare ETP-like\tBCL11B\tBCL11B-R\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tFemale\tNon-ETP\t17\n-3.439928193\t-1.404553711\tPAUWLB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t6\n-3.835817952\t1.650027812\tPAUWMZ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t5\n0.92303596\t-4.475741088\tPAUWNK\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t9\n2.603738408\t2.594010652\tPAUWNU\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-2.677170415\t-0.580796897\tPAUWRG\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t10\n-2.511773128\t-0.851788699\tPAUWSL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t12\n-3.501200814\t0.077191458\tPAUWUY\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 Intergenic Loss (intergenic)\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t18\tOther\tFemale\tNon-ETP\t10\n-3.629461427\t0.251631111\tPAUWXI\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB,TCRG\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t17\n5.436456304\t-2.391007602\tPAUWZF\tBCL11B\t\tBCL11B\tBCL11B--NME enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t8\n3.989178281\t1.777249039\tPAUXAB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t11\n-3.333305974\t1.036446035\tPAUXAI\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO3--TCR\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t6\n2.03785811\t4.785447896\tPAUXCW\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t16\n-3.335482974\t-1.829494178\tPAUXHP\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t8\n-2.037693996\t0.304374695\tPAUXKE\tTAL1 DP-like\tTAL1 DP-like Other\tMYC\tMYC--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tFemale\tNon-ETP\t18\n3.843194108\t-3.693592727\tPAUXNC\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--SATB1\tTCRB,TCRG\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t17\n1.291298966\t-1.016101181\tPAUXPP\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRG,TCRD\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t2\n-2.176089842\t1.379009665\tPAUXRM\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t8\n0.86079083\t0.694615663\tPAUXRV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t14\n0.782114487\t-4.341247737\tPAUXSD\tMLLT10\tMLLT10\tMLLT10\tMLLT10--DDX3X\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t7\n1.854047399\t-5.460332572\tPAUXUU\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t9\n-2.763310332\t-2.067852675\tPAUXYI\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel, PTEN--TCR\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t17\n-1.563541402\t-1.931250274\tPAUXYM\tLMO2 γδ-like\t\tLMO2\tLMO2--BCL11B enhancer, MYC--MIR181A1HG\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tNKX2-5+\tFemale\tNon-ETP\t4\n-2.902040024\t-1.476957976\tPAUXZN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 enhancer SNV/Indel, MYB--TCR, PTEN--TRA\tTCRG,TCRD\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t3\n1.506575923\t4.691214383\tPAUYAB\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-3.085604091\t-1.534029185\tPAUYBP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t7\n-3.545057435\t-1.913337886\tPAUYCZ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n2.575607638\t-3.654492795\tPAUYFW\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tTCRG,TCRD\tFusion\tETP-like\t16\tOther\tFemale\tNear-ETP\t14\n-4.402308125\t-0.732219278\tPAUYGT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t15\n-2.451783557\t1.022355259\tPAUYID\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR, LMO2 Intergenic Loss (RAG2)\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n-3.637359996\t-1.661008775\tPAUYIK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t18\n-2.139063795\t0.598145426\tPAUYJE\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, MYC--MYT1L\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t6\n-1.949842949\t2.021515668\tPAUYJF\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t3\n-1.821971137\t1.965655983\tPAUYMH\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t8\n0.903613668\t-4.438284099\tPAUYNP\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t18\n-0.152488847\t-3.921563804\tPAUYPM\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB,TCRG\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t12\n-4.274618525\t0.867308617\tPAUYSV\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t14\n3.548113446\t2.989979089\tPAUYWL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRG,TCRD\tTranslocation\tTLX3\t4\tNKX2-1+\tMale\tNon-ETP\t6\n-1.460051094\t1.25208515\tPAUZBJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRA,TCRB\tEnhancer Gain\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t13\n3.734138112\t-3.587344825\tPAUZCN\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer, LOSS:ETV6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tETP\t12\n5.377645116\t-2.447412431\tPAUZDC\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tFemale\tETP\t9\n0.578414063\t-4.231125056\tPAUZGD\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRB,TCRG\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t4\n-3.944378514\t1.635928453\tPAUZHK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t3\n0.15637825\t-4.020736157\tPAUZHX\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRB\tFusion\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t8\n-2.972266812\t-2.022855341\tPAUZKE\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n-3.401013989\t1.627841175\tPAUZZA\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t6\n4.285963635\t2.127964557\tPAVAAC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t8\n3.407450776\t-4.281344592\tPAVAEL\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tFemale\tNear-ETP\t20\n1.291502576\t-1.002842545\tPAVAGE\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRG\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t2\n-2.604463477\t1.470858634\tPAVAIR\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, CEP128--PDGFRB, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t2\n0.474751453\t0.551347077\tPAVAJF\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t14\n-3.741164107\t-1.135475099\tPAVAJG\tTAL1 αβ-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--STIL, LYL1--TCR\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t11\n-1.910346825\t1.865947664\tPAVAPE\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tLMO1+\tFemale\tNon-ETP\t4\n-1.560611058\t-1.901213467\tPAVARZ\tLMO2 γδ-like\t\t\t\tTCRG,TCRD\t\tRare-Other\t1\tOther\tMale\tNon-ETP\t7\n3.106085877\t-2.425262391\tPAVAVU\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tFemale\tNon-ETP\t6\n0.586590629\t0.421886385\tPAVAWK\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t4\n-2.36627068\t-0.517181903\tPAVAWP\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 αβ-like\t8\tOther\tFemale\tNon-ETP\t5\n-3.519930024\t-2.271515309\tPAVAWW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n3.323546033\t-2.442559659\tPAVAXI\tETP-like\tRare ETP-like\tHTR4\tHTR4--UBE2H\tNo TCR-R\tIntergenic INV\tETP-like\t6\tOther\tMale\tETP\t21\n0.991803985\t-4.410515963\tPAVBAW\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t13\n-3.115436335\t-1.592531144\tPAVBCW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t5\n-4.058084626\t-0.30138874\tPAVBDL\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t8\n2.021602969\t-5.209989726\tPAVBEH\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tNKX2-1+\tFemale\tNon-ETP\t12\n3.884981732\t2.718238175\tPAVBEJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n-3.84066977\t2.104113639\tPAVBFC\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t3\n2.380967479\t3.162934125\tPAVBHE\tTLX3\tTLX3 DP-like\t\t\tNo TCR-R\t\tTLX3\t24\tTLX3+\tFemale\t\t7\n1.631149869\t-5.884014785\tPAVBIK\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t15\n3.900330167\t2.697948993\tPAVBKZ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, PDGFRA--TCR\tTCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t4\n2.795471768\t-3.763578355\tPAVBLJ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRB\tFusion\tETP-like\t16\tHOXA9+\tMale\tNear-ETP\t16\n-1.618870069\t-1.987205564\tPAVBLX\tLMO2 γδ-like\t\tLMO2\tLMO2--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tRare-Other\t1\tOther\tMale\tNon-ETP\t16\n3.049193482\t2.644831956\tPAVBPR\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, JAK2--CEP350\tTCRB,TCRD\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNear-ETP\t4\n-2.453556318\t-1.05009526\tPAVBSK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tTCRB\t\tTAL1 αβ-like\t8\tLMO1+\tFemale\tNear-ETP\t9\n0.599141102\t0.308080704\tPAVBTH\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t7\n-3.177121658\t2.084961474\tPAVBUB\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR, LMO2 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t4\n4.003213983\t-3.194209039\tPAVCBR\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t6\n4.394098382\t2.476164401\tPAVCDB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t15\n2.635851245\t3.256901324\tPAVCDF\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tNKX2-1+\tFemale\tNon-ETP\t10\n0.352391582\t0.696034551\tPAVCEA\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tNKX2-1+\tMale\tNon-ETP\t3\n-3.751233239\t-0.991496324\tPAVCHZ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n2.991760354\t2.957716525\tPAVCLF\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t7\n-0.030451436\t-3.86716932\tPAVCMP\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t16\n3.986234765\t1.761550367\tPAVCPX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t4\n3.245500188\t-2.160513579\tPAVCRF\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tFemale\tNear-ETP\t9\n-3.851518054\t1.214980305\tPAVCRK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t11\n3.893358808\t-2.372076928\tPAVCUG\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tNo TCR-R\tTCR-R\tETP-like\t6\tOther\tMale\tETP\t20\n2.656112294\t-3.704144895\tPAVCWG\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNear-ETP\t19\n-1.359285374\t0.707666636\tPAVCYC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t10\n-4.201542993\t1.412598432\tPAVCYV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tTAL2+\tMale\tNon-ETP\t11\n5.416736703\t-2.399619758\tPAVDBL\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tMale\tETP\t16\n-4.181441207\t0.556320429\tPAVDEB\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRA,TCRB\tEnhancer Gain\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t7\n3.654188733\t1.6260162\tPAVDFB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t9\n-4.446660418\t-1.331865012\tPAVDHU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t10\n-3.765126605\t0.040692337\tPAVDJU\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRA,TCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t13\n4.194396596\t2.612674535\tPAVDMR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t6\n-4.534598727\t-0.078582044\tPAVDSJ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t15\n-4.258562942\t1.860229672\tPAVESF\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2 Intergenic Loss (CAPRIN1), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t10\n1.84231029\t4.366901696\tPAVESV\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n1.283228736\t-1.023469984\tPAVEUT\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRA,TCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t11\n-3.095834632\t1.375677646\tPAVEUZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t8\n-1.112541374\t1.924712956\tPAVFAC\tNKX2-5\t\tNKX2-5\tNKX2-5--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-5+\tMale\tNon-ETP\t2\n2.980881791\t2.634378732\tPAVFAK\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tNKX2-1+\tFemale\tNon-ETP\t6\n-3.663318772\t-1.028242289\tPAVFAX\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2--CD99\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t2\n2.676497798\t3.064608872\tPAVFBV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-2.358622928\t2.208622754\tPAVFDF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t7\n3.416039567\t-2.50475496\tPAVFDX\tETP-like\tRare ETP-like\tZNF609\tZNF609--ARID4B\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tNear-ETP\t6\n4.405238729\t2.42383343\tPAVFHF\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n3.116584878\t-3.745714127\tPAVFHW\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t12\n3.294763188\t-4.180974662\tPAVFIC\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--NAP1L1\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tFemale\tNear-ETP\t17\n-3.425439019\t-1.642394602\tPAVFIF\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t9\n4.130232434\t1.769508184\tPAVFIU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t8\n3.8256527\t-4.076842486\tPAVFKG\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tMale\t\t17\n3.070872884\t-2.33542937\tPAVFKN\tETP-like\tRare ETP-like\tJAK2\tJAK2--SMIM19, JAK2--PCM1\tTCRD\tFusion\tETP-like\t6\tTLX3+\tMale\tETP\t11\n-0.21505024\t-3.901348054\tPAVFLN\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t6\n5.383985143\t-2.41520828\tPAVFMU\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t10\n4.043974023\t1.4666304\tPAVFRT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t4\n3.623542409\t-4.563651263\tPAVFSG\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRA,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tNear-ETP\t8\n3.853257279\t-2.400239169\tPAVFSN\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tLOSS:ZFP36L2, LOSS:RUNX1\tTCRG,TCRD\tIntragenic Loss\tETP-like\t6\tHOXA13+\tMale\tETP\t13\n1.746812444\t4.846602262\tPAVFWD\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t14\n-0.104114552\t-4.00320357\tPAVFWF\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t17\n-2.365924139\t1.477118195\tPAVFXU\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t12\n3.934142213\t2.791182817\tPAVFYD\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t3\n-3.726946969\t1.647548259\tPAVGMF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--MIR181A1HG\tTCRB\tTranslocation\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t7\n1.019365888\t4.080785573\tPAVGSF\tNKX2-5\t\tNKX2-5\tNKX2-5--TCR\tTCRB\tTCR-R\tNKX2-1\t21\tNKX2-5+\tMale\tNon-ETP\t4\n-3.532012839\t-2.193272769\tPAVGUP\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 Intergenic Loss (CAPRIN1), TAL1 enhancer SNV/Indel\tTCRA,TCRB\tIntergenic Loss\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t13\n5.412736039\t-2.411694705\tPAVGXH\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t14\n-1.654493202\t1.888735593\tPAVHAA\tTAL1 DP-like\tTAL1 DP-like RPL10\t\t\tTCRA,TCRB\t\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t16\n-3.317523618\t2.100105346\tPAVHAV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t6\n-4.116525073\t1.395942867\tPAVHBC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t4\n-3.060840268\t2.147521556\tPAVHBL\tTAL1 DP-like\tTAL1 DP-like Jak\tNCOA6\tNCOA6--SPDEF\tTCRB\tTranslocation\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t12\n-1.682991971\t-1.955803215\tPAVHBN\tLMO2 γδ-like\t\tLMO2\tLMO2 enhancer SNV/Indel\tTCRG,TCRD\tIntergenic SNV/Indel\tRare-Other\t1\tOther\tMale\tNear-ETP\t14\n2.378921609\t3.394294561\tPAVHGX\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t12\n-1.674558361\t1.455374897\tPAVHJW\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t16\n3.768417459\t-2.508756101\tPAVHNX\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t6\tHOXA13+\tFemale\tETP\t25\n-1.229971285\t4.092805684\tPAVHUH\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t15\n3.196008306\t-3.977187097\tPAVHUL\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t17\n2.666134934\t-3.734106481\tPAVHUT\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t16\n-4.403376956\t-1.387698352\tPAVHVN\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNear-ETP\t2\n-3.344910998\t0.969892562\tPAVIDN\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t11\tOther\tFemale\tNon-ETP\t11\n-0.864905496\t4.19704944\tPAVIEN\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t7\n1.949938636\t-5.231787383\tPAVIHA\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT3\tTCRG,TCRD\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t5\n-1.681350101\t4.375933946\tPAVIIW\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t9\n3.677971463\t-4.6069929\tPAVINC\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tETP\t10\n-3.823374886\t1.271541417\tPAVJBF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2), TAL1 enhancer SNV/Indel\tTCRB\tIntergenic Loss\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t17\n-1.383613561\t-1.939943134\tPAVJCH\tNUP98\tNUP98\tNUP98\tNUP98--TNRC18\tTCRA,TCRG\tFusion\tRare-Other\t1\tOther\tFemale\tETP\t7\n-1.61590897\t1.845242918\tPAVJFA\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--TCR, RPL10\tTCRA\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t19\n3.423903565\t-2.544103085\tPAVJFH\tETP-like\tETV6 ETP-like\tETV6\tETV6--FOXO1\tNo TCR-R\tTranslocation\tETP-like\t6\tOther\tFemale\tNon-ETP\t8\n0.8596736\t-4.403920352\tPAVJHG\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNear-ETP\t2\n-1.139163901\t4.185189069\tPAVJJK\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 enhancer gain\tTCRB\tEnhancer Gain\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t1\n-1.544913847\t1.05711943\tPAVJJU\tTAL1 DP-like\tTAL1 DP-like Other\tKMT2A\tKMT2A--CASP8AP2, RUNX2--TCR\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t4\n2.127380233\t3.411754668\tPAVJLJ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, TAL1 enhancer SNV/Indel\tTCRB\tTranslocation\tTLX3\t24\tLMO1+\tFemale\tNon-ETP\t9\n4.193575482\t1.805105746\tPAVJNX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n-4.142714639\t-1.079556882\tPAVJRI\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t12\n-1.967020173\t-0.302384108\tPAVJVV\tETP-like\tRare ETP-like\tLMO2\tLMO2 enhancer SNV/Indel, BCR--ABL1\tNo TCR-R\tIntergenic SNV/Indel\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n-3.019270201\t-1.869414389\tPAVJWE\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t22\n-3.8023838\t1.500314892\tPAVKCV\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t16\n0.430316787\t0.464938611\tPAVKJM\tTME-enriched\t\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tOther\tMale\tNon-ETP\t24\n-3.770699162\t0.865775347\tPAVKJU\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t7\n3.22039948\t-3.271908938\tPAVKLI\tETP-like\tRare ETP-like\tRUNX1\tRUNX1--GATA3\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tNear-ETP\t18\n-3.566620011\t-1.263047039\tPAVKPV\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t1\n-3.098698158\t-1.525365292\tPAVKUU\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1--TCR, LMO1--LDLRAD4\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t4\n4.328800302\t2.029612363\tPAVKVL\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t9\n-4.138618131\t1.43583113\tPAVKWV\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t11\n-2.246854324\t-0.072733357\tPAVKYJ\tTAL1 DP-like\tTAL1 DP-like Other\tMYC\tMYC--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tFemale\tNon-ETP\t8\n3.087132554\t-3.477737605\tPAVKZV\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t9\tHOXA9+\tFemale\tETP\t3\n-3.699400325\t0.562885047\tPAVLCX\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t5\n-0.957083781\t4.269413293\tPAVLFA\tNKX2-1\tNKX2-1 Other\tMYB\tMYB--TCR, NKX2-1 Intergenic Loss\tTCRG\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t1\n3.298630338\t-2.450984418\tPAVLGT\tETP-like\t\t\t\tTCRD\t\tETP-like\t6\tHOXA9+\tMale\tNear-ETP\t17\n3.760074239\t-2.334214866\tPAVLII\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--SFPQ, RANBP2--ABL1\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tETP\t17\n1.646351438\t-4.631055533\tPAVLKA\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tHOXA9 TCR/MLT10\t22\tHOXA13+\tMale\tETP\t6\n1.768198829\t4.869285405\tPAVLLL\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n-1.456386555\t4.434050382\tPAVLLU\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t3\n-2.591844697\t1.844203175\tPAVLMX\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t11\n-4.396221061\t2.060714067\tPAVLMY\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\t\t\tTCRG,TCRD\t\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t7\n1.231524806\t-4.472181498\tPAVLPG\tNUP98\tNUP98\tNUP98\tNUP98--RAP1GDS1\tNo TCR-R\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA13+\tMale\tNon-ETP\t16\n2.888171773\t-2.349139392\tPAVLUN\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tNKX2-5+\tMale\tETP\t5\n0.674365501\t-4.294077098\tPAVLUP\tNUP214\tNUP214\tNUP214\tNUP214--SET\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA13+\tFemale\tNon-ETP\t9\n-4.41221251\t-1.397688806\tPAVLWU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t12\n3.258507829\t-3.723634421\tPAVLXW\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET, LOSS:ETV6, LOSS:NF1,SUZ12\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tFemale\tETP\t25\n3.206469159\t-4.161543548\tPAVLYI\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t27\tHOXA13+\tMale\tNon-ETP\t14\n0.139406304\t-3.757951438\tPAVMBP\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tNKX2-1+\tFemale\tNon-ETP\t10\n-4.153012176\t-1.720550835\tPAVMGW\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t22\n-1.956075866\t4.840171636\tPAVMKN\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t17\n-3.385611196\t-1.583621799\tPAVMLG\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t13\n1.816907983\t4.89189607\tPAVMLZ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t7\n2.345587592\t3.254885972\tPAVMNW\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t4\n-3.30553164\t1.333354652\tPAVMPB\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t12\n-4.227741857\t2.158677638\tPAVMPT\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t3\n1.302891831\t-1.022244512\tPAVMUJ\tSPI1\t\tSPI1\tSPI1--TCF7\tTCRG\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t4\n1.61898766\t-5.832820594\tPAVMVL\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB,TCRG\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t2\n-1.622792054\t1.757156432\tPAVMWK\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t10\n1.272627692\t-1.026017725\tPAVMYX\tSPI1\t\tSPI1\tSPI1--STMN1\tTCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t7\n-3.089492936\t1.517312825\tPAVMZJ\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n-4.175167699\t-1.670178234\tPAVNBJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tNo TCR-R\tFusion\tTAL1 αβ-like\t11\tLMO1+\tMale\t\t8\n3.650843244\t1.340336145\tPAVNBS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--GRID2\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t11\n1.442084651\t4.254041017\tPAVNDL\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n-1.663977225\t4.537177384\tPAVNFU\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t13\n-1.772052247\t4.621407331\tPAVNGZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t2\n-3.731844563\t-1.223126828\tPAVNHX\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO1\tLMO1--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t16\n-1.869486113\t0.323167086\tPAVNKZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t7\tOther\tMale\tNon-ETP\t17\n-4.302792926\t-0.675904691\tPAVNRN\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t23\n-2.709380527\t1.11381346\tPAVNSM\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t16\n-1.945646543\t1.278161586\tPAVNTB\tTAL1 DP-like\tTAL1 DP-like Other\tTCF7\tLOSS:TCF7\tTCRB\tIntergenic Loss\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t4\n4.035874467\t1.749759615\tPAVNUC\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t9\n3.754617791\t2.75964433\tPAVNWE\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t5\n5.416483979\t-2.392105281\tPAVNWI\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tNKX2-5+\tFemale\tETP\t16\n-2.534491916\t0.645798982\tPAVPCB\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t12\n-4.523581643\t-0.948045432\tPAVPCU\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1 enhancer gain\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t10\n-2.303317804\t1.844976247\tPAVPCZ\tTAL1 DP-like\tTAL1 DP-like RPL10\tLMO2\tLMO2--MIR2117HG, RPL10\tTCRB\tTranslocation\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t9\n-3.502799649\t-1.515759766\tPAVPEN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n-3.787559171\t0.661359191\tPAVPGA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t9\n3.074059587\t-3.687440574\tPAVPHP\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t9\tHOXA9+\tMale\tNear-ETP\t7\n-0.045685668\t-3.974241673\tPAVPLD\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tNKX2-1+\tFemale\tNon-ETP\t22\n-3.379544158\t1.560893119\tPAVPLJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t10\n4.226287942\t2.6284526\tPAVPLN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t4\n3.773645501\t-3.457429587\tPAVPPV\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--MIR181A1HG\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t4\n-2.904137154\t2.14553386\tPAVPTM\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--TCR, RPL10, NUP214--ABL1\tTCRB\tTCR-R\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t10\n1.252397399\t-1.039891421\tPAVPUV\tSPI1\t\tSPI1\tSPI1--STMN1\tTCRB\tFusion\tRare-Other\t10\tOther\tFemale\tNon-ETP\t13\n4.450165372\t2.086482347\tPAVPYX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t9\n-3.758005519\t1.530443371\tPAVRAP\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t5\n2.970582585\t-2.170630633\tPAVRAW\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n2.722009759\t-4.442722976\tPAVRBB\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tFemale\tNear-ETP\t9\n-3.044435759\t-1.82516092\tPAVRBK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t7\n-1.328116443\t4.230299771\tPAVRDC\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t2\n1.844352584\t4.406183541\tPAVRHT\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t20\n3.295065026\t1.840225518\tPAVRKG\tTLX3\tTLX3 Immature\t\t\tTCRB\t\tTLX3\t5\tTLX3+\tFemale\tNon-ETP\t7\n1.8585249\t4.805169404\tPAVRLH\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t18\n3.019621472\t-3.845823228\tPAVRLJ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t16\tHOXA13+\tFemale\tETP\t15\n2.118171792\t3.228641093\tPAVRLN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, LMO2 Intergenic Loss (RAG2)\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t19\n-1.703429301\t4.597362817\tPAVRLT\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRA,TCRB,TCRG\tTCR-R\tNKX2-1\t15\tNKX2-1+\tFemale\tNon-ETP\t26\n3.043773751\t-2.271333634\tPAVRTX\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tFemale\tNon-ETP\t5\n0.070746045\t0.71291107\tPAVRUD\tTME-enriched\t\tTAL1\tTAL1 enhancer SNV/Indel, NUP214--SET\tTCRG,TCRD\tIntergenic SNV/Indel\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t6\n-3.618407149\t-1.036672413\tPAVRUJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t13\n-0.95230471\t4.281312287\tPAVRWC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--TCR, MYB--TCR\tTCRG,TCRD\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t8\n-3.580322404\t2.077579558\tPAVRXK\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR, LYL1 enhancer gain\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t5\n4.031555276\t-2.950734794\tPAVRYM\tETP-like\tETV6 ETP-like\tETV6\tETV6--FOXO1\tNo TCR-R\tFusion\tETP-like\t9\tOther\tFemale\tETP\t8\n-4.194537301\t-0.603898525\tPAVRYP\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n3.613134007\t-2.47209829\tPAVSEI\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t6\tOther\tMale\tETP\t13\n4.140113454\t1.546674431\tPAVSHE\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t6\n0.812841754\t0.491805018\tPAVSIP\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTME-enriched\t20\tOther\tMale\tNear-ETP\t4\n3.753054242\t2.464501679\tPAVSMR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t11\n3.245728116\t-2.912372767\tPAVSRU\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--SLC4A8\tNo TCR-R\tTranslocation\tETP-like\t6\tHOXA13+\tMale\tETP\t8\n3.659895997\t1.899749339\tPAVSXU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRD\tTCR-R\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t7\n5.387114148\t-2.420257985\tPAVSYI\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tMale\tETP\t16\n3.986268621\t-3.282056748\tPAVSYX\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--ETV6\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNear-ETP\t10\n4.226162057\t1.593511046\tPAVSZJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t7\n1.287535768\t-1.03967303\tPAVSZX\tSPI1\t\tSPI1\tSPI1--STMN1\tTCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t4\n3.741443257\t-3.181662738\tPAVTAB\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tFemale\tNear-ETP\t1\n-2.850893993\t-1.391813218\tPAVTAT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL2\tTAL2--TCR, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tTAL2+\tMale\tNon-ETP\t6\n-3.246220965\t1.6355595\tPAVTCA\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t12\n3.891067128\t1.868106068\tPAVTCM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t8\n3.579274755\t-4.525198638\tPAVTCV\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t8\n2.406462293\t-3.876314103\tPAVTEZ\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tNon-ETP\t6\n2.10760222\t-4.695884406\tPAVTPN\tMLLT10\tMLLT10\tMLLT10\tMLLT10--XPO1\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tMale\tETP\t4\n2.406729322\t-4.474955737\tPAVTXY\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--SEPT2\tTCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\tNon-ETP\t9\n-3.550808091\t-0.823076903\tPAVUCS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t11\n3.837086301\t1.543907941\tPAVUFK\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t19\n4.268751721\t2.424304545\tPAVUFU\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRB\tTCR-R\tTLX3\t4\tTLX3+\tFemale\tNear-ETP\t7\n0.022424798\t-3.900061309\tPAVUGS\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t8\n-3.939343591\t0.472883761\tPAVUKV\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t13\n-0.791701127\t-0.709107458\tPAVURZ\tSTAG2/LMO2\t\tLMO2\tLMO2--STAG2\tTCRB\tTranslocation\tRare-Other\t13\tOther\tFemale\tNear-ETP\t1\n-3.283734937\t1.638004006\tPAVUSY\tTAL1 DP-like\tTAL1 DP-like Other\tTAL2\tTAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tTAL2+\tMale\tNon-ETP\t3\n2.277538161\t2.964376271\tPAVUTN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t12\n2.604191165\t2.946866096\tPAVUUF\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t8\n-3.447612424\t1.479012311\tPAVUVZ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRG,TCRD\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t15\n3.651732545\t-3.280669867\tPAVUWX\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t12\n3.07226954\t1.553893865\tPAVUYY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t13\n-1.297421229\t4.170391858\tPAVVBE\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t9\n-1.916617413\t4.948757947\tPAVVDS\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--BCL11B enhancer\tTCRB\tIntergenic INV\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n3.385872941\t2.86594373\tPAVVEI\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t7\n-4.473871131\t-1.024983942\tPAVVHL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t11\n-3.374738831\t-2.21028608\tPAVVIL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t19\n0.011529307\t-3.954906165\tPAVVLA\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRG,TCRD\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t6\n3.433748345\t-4.330361545\tPAVVVF\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--DDX3X\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tFemale\tETP\t17\n4.389993768\t2.062082112\tPAVVVK\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t6\n2.893096547\t-3.26834768\tPAVVZA\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--HNRNPH1, MED12\tTCRB\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNear-ETP\t19\n5.457290273\t-2.36591047\tPAVVZW\tBCL11B\t\tBCL11B\tBCL11B--ARID1B enhancer\tNo TCR-R\tTranslocation\tBCL11B\t25\tOther\tFemale\tETP\t8\n-1.634608765\t4.226982415\tPAVWAX\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t17\n-4.227998633\t0.535387993\tPAVWDA\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t1\n-4.388222833\t0.54053551\tPAVWDF\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t10\n0.525636535\t0.439015568\tPAVWDR\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tTLX1+\tMale\tNon-ETP\t13\n-0.146627445\t-3.95109409\tPAVWHF\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRA,TCRB,TCRG\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tFemale\tNon-ETP\t16\n-2.338616271\t0.071199574\tPAVWJA\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, MYC--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t8\tLMO1+\tFemale\tNon-ETP\t5\n-2.635950584\t-1.149346649\tPAVWJL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t13\n-4.484662909\t-0.588589489\tPAVWLX\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNear-ETP\t8\n4.036301236\t2.781160176\tPAVWMM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--CDK6\tTCRA,TCRG\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t4\n-2.94686379\t-1.26829499\tPAVWMN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tTCRA,TCRB\t\tTAL1 αβ-like\t3\tLMO1+\tMale\tNear-ETP\t15\n-4.285176892\t-0.060501754\tPAVWNL\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t12\n-4.19162931\t0.834614456\tPAVWUC\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t5\n1.866242509\t4.626505673\tPAVWUJ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t20\n-3.563653369\t1.244191945\tPAVWWF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t2\n3.083116155\t-3.190350234\tPAVWZZ\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA13+\tMale\tETP\t7\n-3.032498856\t-2.041764199\tPAVXBD\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNear-ETP\t6\n-4.044635911\t1.148791254\tPAVXBS\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t8\n1.559984069\t4.086952031\tPAVXGM\tTLX1\t\t\t\tTCRB\t\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t2\n3.794126134\t1.930901468\tPAVXHH\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tFemale\tNear-ETP\t6\n2.258413415\t3.209379018\tPAVXIP\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, TAL1--STIL\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t8\n2.721709113\t2.866394103\tPAVXIR\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t17\n-2.177902896\t-0.575982451\tPAVXMK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\t\t\tTCRB\t\tTAL1 αβ-like\t8\tOther\tFemale\tETP\t15\n-4.073628802\t0.396224291\tPAVXPD\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--TCR, LMO1 enhancer SNV/Indel\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t11\tLMO1+\tMale\tNon-ETP\t17\n-2.017349203\t1.754928291\tPAVXPT\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 Intergenic Loss (RAG2)\tTCRB\tIntergenic Loss\tTAL1 DP-like\t18\tOther\tFemale\tNon-ETP\t2\n0.459255438\t0.715419531\tPAVXSB\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t8\tOther\tMale\tNear-ETP\t6\n-2.254419584\t0.932619632\tPAVXTB\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel, ABL1--SPTAN1\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t6\n-3.542497535\t-1.981185495\tPAVXUW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t13\n-3.119833727\t-1.107803761\tPAVXVA\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t5\n-3.508105178\t1.333631695\tPAVXWR\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tLMO1+\tMale\tNon-ETP\t14\n-4.197975297\t-0.200912907\tPAVXYS\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB,TCRD\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t18\n-3.37968411\t2.12945658\tPAVYAZ\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t13\n-3.76223578\t-1.633038699\tPAVYCT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2--SSH2\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t14\n0.910830598\t-4.466222941\tPAVYDR\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t3\n4.118744473\t-3.35820192\tPAVYFB\tETP-like\tRare ETP-like\tHOXB13\tHOXB13--BAHCC1\tNo TCR-R\tIntergenic INV\tETP-like\t9\tOther\tMale\tNear-ETP\t6\n-1.731540937\t4.489275754\tPAVYFZ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t9\n-2.285559316\t0.706674636\tPAVYGR\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tNCOA6\tNCOA6--SPDEF\tTCRB\tTranslocation\tTAL1 DP-like\t8\tLMO1+\tMale\tNon-ETP\t15\n-1.783769329\t0.530311764\tPAVYML\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer gain\tTCRB\tEnhancer Gain\tTAL1 DP-like\t8\tLMO1+\tMale\tNear-ETP\t3\n-4.594673772\t-0.491926222\tPAVYSR\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t11\n-4.611564298\t-0.386781543\tPAVYTZ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t11\n3.590324025\t-4.682940185\tPAVYVY\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t11\n2.971740823\t2.641451419\tPAVZAV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--TCR\tTCRB\tTCR-R\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t12\n-4.244437118\t0.875828386\tPAVZCF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t2\n3.02056704\t-2.364384829\tPAVZCZ\tETP-like\tMED12 ETP-like\tMED12\tMED12, PDGFRB--N4BP2\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t7\n-4.111318727\t1.558191121\tPAVZHD\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (RAG2)\tTCRB\tFusion\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t16\n2.319801431\t2.898167193\tPAVZJI\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t5\n0.743865709\t-4.408614814\tPAVZKL\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tFemale\tNon-ETP\t7\n4.166068177\t2.3948012\tPAVZLS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t9\n-3.274558921\t-2.114591777\tPAVZTC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tFemale\tNon-ETP\t5\n-0.774190087\t-0.723914802\tPAVZVG\tSTAG2/LMO2\t\tLMO2\tLMO2--CELF1\tTCRG,TCRD\tTranslocation\tRare-Other\t13\tOther\tFemale\tNon-ETP\t1\n0.338520031\t0.656891168\tPAVZXK\tTME-enriched\t\tTAL1\tLMO2--IGH,CCND2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTME-enriched\t20\tOther\tMale\tNon-ETP\t3\n-3.106792827\t-0.949658155\tPAWABB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t2\n3.234833341\t-2.214622676\tPAWACK\tETP-like\tRare ETP-like\tKMT2D\tKMT2D--AEBP2\tNo TCR-R\tFusion\tETP-like\t6\tOther\tFemale\tNear-ETP\t11\n3.646751981\t-4.543681323\tPAWAEK\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tNo TCR-R\tFusion\tETP-like\t27\tHOXA9+\tFemale\tNear-ETP\t8\n0.834648948\t0.518411875\tPAWAEM\tTME-enriched\t\tTLX3\tTLX3--BCL11B enhancer\tNo TCR-R\tTranslocation\tTME-enriched\t20\tOther\tMale\tNear-ETP\t4\n2.681714635\t2.840508044\tPAWAFV\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t5\n3.729601483\t2.716553271\tPAWAIH\tTLX3\tTLX3 Immature\tTLX3\tTLX3--ETV6, NUP214--ABL1\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNear-ETP\t20\n-3.852544923\t1.170972646\tPAWAII\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, PCNX4--TCR\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t4\n-3.667827506\t-0.785832881\tPAWAIM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t3\n-3.447979827\t-1.525229871\tPAWAIN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t10\n-3.493248363\t2.104808391\tPAWAKA\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t14\n2.256426673\t2.924158395\tPAWAKN\tTLX3\tTLX3 DP-like\t\t\tNo TCR-R\t\tTLX3\t24\tTLX3+\tMale\t\t7\n-1.772648056\t4.709095777\tPAWALP\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t8\n3.645320039\t-4.628542602\tPAWAMD\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM, MED12\tTCRG,TCRD\tFusion\tETP-like\t27\tHOXA9+\tMale\tNon-ETP\t27\n3.754471402\t1.256605089\tPAWAMR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t5\n-1.937171299\t2.193773091\tPAWAMT\tTAL1 DP-like\tTAL1 DP-like RPL10\tMYB\tMYB--TCR, RPL10\tTCRB,TCRG\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t3\n2.936378579\t-2.615559995\tPAWAMV\tETP-like\tMED12 ETP-like\tMED12\tMED12, RUNX1--AFF3\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA9+\tFemale\tNear-ETP\t3\n3.44295321\t-3.374702393\tPAWANS\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tETP\t11\n-3.163962383\t1.986510814\tPAWARP\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t2\tTAL2+\tMale\tNon-ETP\t11\n3.642509084\t-4.580077826\tPAWAUA\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG\tFusion\tETP-like\t27\tHOXA9+\tMale\tETP\t14\n1.269242864\t-1.014549136\tPAWAWJ\tSPI1\t\tSPI1\tSPI1--YWHAE\tTCRB\tFusion\tRare-Other\t10\tOther\tMale\tNon-ETP\t1\n-3.452802796\t-1.553449928\tPAWAYT\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t14\n-1.310259279\t1.346845091\tPAWBEE\tTAL1 DP-like\tTAL1 DP-like Other\tNOTCH1\tNOTCH1--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tNKX2-5+\tFemale\tNon-ETP\t14\n-3.893783469\t-0.232898607\tPAWBGD\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t17\n2.732756715\t-2.475851476\tPAWBKA\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tFemale\tNon-ETP\t21\n-3.835422654\t0.330381632\tPAWBMY\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL2\tLMO1--TCR, TAL2--TCR\tTCRB\tTCR-R\tTAL1 αβ-like\t3\tTAL2+\tMale\tNon-ETP\t3\n-1.873524089\t4.869690717\tPAWBPD\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t13\n-3.067809482\t1.031665266\tPAWBTV\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, TAL1--TLE4\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n0.854255061\t-4.268539607\tPAWCUT\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRB\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t17\n-4.356948752\t-1.308969318\tPAWCWL\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRA,TCRB,TCRG\tFusion\tTAL1 αβ-like\t11\tOther\tFemale\tNon-ETP\t12\n3.573422532\t-2.266944825\tPAWCWY\tETP-like\tMED12 ETP-like\tMED12\tMED12\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tHOXA9+\tFemale\tNear-ETP\t6\n-1.292098772\t1.297378123\tPAWCXD\tTAL1 DP-like\tTAL1 DP-like Other\tBCOR\tBCOR--SH3KBP1\tTCRA,TCRB\tFusion\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t1\n-3.419416566\t-1.121088445\tPAWDEK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--TCR, LMO1--TCR\tTCRA,TCRB\tTCR-R\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t1\n1.650023799\t-5.896645724\tPAWDFH\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t8\n-0.150052686\t-3.919057786\tPAWDHX\tHOXA9 TCR\tHOXA9\tHOXA9\tHOXA9--TCR\tTCRA,TCRB\tTCR-R\tHOXA9 TCR/MLT10\t22\tHOXA9+\tMale\tNon-ETP\t13\n2.438576083\t-3.756141364\tPAWDLY\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tFemale\tNon-ETP\t3\n-3.31878819\t2.255464376\tPAWDMI\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t10\n0.473916869\t0.382925273\tPAWDSF\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t6\n-4.076582808\t1.390388072\tPAWDSJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t11\n-3.001999159\t1.013587177\tPAWDWJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB,TCRD\tFusion\tTAL1 DP-like\t8\tOther\tFemale\tNon-ETP\t8\n1.610687118\t4.864088834\tPAWDXE\tTLX1\t\tTLX1\tTLX1 Intergenic Loss, NUP214--ABL1\tTCRA,TCRB,TCRG\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t9\n1.97712503\t4.749419034\tPAWDXJ\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t3\n3.425700765\t-2.781594455\tPAWEDW\tETP-like\tETV6 ETP-like\tETV6\tETV6--NCOA2\tNo TCR-R\tFusion\tETP-like\t6\tOther\tMale\tNon-ETP\t4\n1.782626729\t4.236846746\tPAWEEC\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t7\n-1.744729598\t4.67500335\tPAWEEX\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t1\n-3.340109963\t2.063366235\tPAWEGE\tTAL1 DP-like\tTAL1 DP-like Jak\tTAL1\tTAL1--TCR, LMO1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t2\tLMO1+\tFemale\tNon-ETP\t13\n4.376916986\t2.045177758\tPAWEIP\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t13\n3.290416818\t2.296110929\tPAWEKR\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t7\n2.329357009\t2.957213224\tPAWEKT\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n1.993546109\t4.896948636\tPAWEND\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRB,TCRG\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t5\n-2.932501812\t-1.628160893\tPAWESJ\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRG,TCRD\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t22\n-3.647772212\t0.894648552\tPAWETD\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel, TAL1 enhancer gain\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t15\n3.037813764\t1.847052515\tPAWEUB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNear-ETP\t6\n-1.17525762\t1.14982766\tPAWEYS\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tFemale\tNon-ETP\t14\n-4.117572207\t-1.285408794\tPAWFBC\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t6\n3.70613585\t-4.457541644\tPAWFBD\tETP-like\tNUP214 ETP-like\tNUP214\tNUP214--SET\tTCRG\tFusion\tETP-like\t27\tHOXA13+\tFemale\tETP\t12\n2.731270652\t-4.30604428\tPAWFBG\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--CD3G\tTCRG\tFusion\tETP-like\t14\tHOXA9+\tMale\tETP\t11\n3.734787564\t-2.500170886\tPAWFBT\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2--TCR\tNo TCR-R\tTCR-R\tETP-like\t6\tHOXA13+\tMale\tETP\t15\n3.572836976\t-3.450636804\tPAWFHI\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--RUNX1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t4\n3.538321595\t-3.268268763\tPAWFIH\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--RUNX1\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t4\n3.727827649\t2.858551086\tPAWFIM\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR\tTCRG,TCRD\tTCR-R\tTLX3\t4\tTLX3+\tMale\tETP\t5\n1.758327107\t-5.809503257\tPAWFLB\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tFemale\tNon-ETP\t15\n-4.037322898\t1.426451624\tPAWFNJ\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--TCR, LMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t5\n4.087240796\t1.501750768\tPAWFRE\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t16\n-2.218505521\t0.661218763\tPAWFST\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t5\n2.710852962\t-2.485428035\tPAWFVY\tETP-like\tRare ETP-like\tPITX1\tC5orf66--TCR\tTCRG,TCRD\tTCR-R\tETP-like\t6\tOther\tMale\tNon-ETP\t8\n-1.912985463\t4.945050538\tPAWFWF\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB,TCRD\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t8\n3.120369058\t-2.334668338\tPAWFXU\tETP-like\tMED12 ETP-like\tMED12\tMED12, BCR--ABL1\tNo TCR-R\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNon-ETP\t13\n2.673557143\t2.814780534\tPAWFYE\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tFemale\tNon-ETP\t9\n-3.620431561\t-0.969856619\tPAWGCK\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRA,TCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNear-ETP\t8\n-3.682776828\t0.39365384\tPAWGDG\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2--LINC01058\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t24\n4.049490075\t-3.295365273\tPAWGGE\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t14\n-3.998401542\t1.200624884\tPAWGHK\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t14\n3.677277188\t2.894318402\tPAWGHS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR, ABL1--ETV6\tTCRB\tTCR-R\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t7\n-3.545706887\t2.076278508\tPAWGIT\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t5\n-0.714894075\t-0.685926437\tPAWGLE\tSTAG2/LMO2\t\tSTAG2\tSTAG2\tTCRB\tStop/Frameshift/Splicing\tRare-Other\t13\tOther\tFemale\tNear-ETP\t1\n3.3712431\t-2.514455258\tPAWGPI\tETP-like\tMED12 ETP-like\tMED12\tMED12, chromosome gains\tTCRG,TCRD\tStop/Frameshift/Splicing\tETP-like\t6\tOther\tMale\tNear-ETP\t15\n4.160881143\t2.394445241\tPAWGRS\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t10\n3.517446618\t-3.334779679\tPAWGTM\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tMale\tETP\t12\n3.562944036\t-3.475866019\tPAWGTV\tETP-like\t\t\t\tNo TCR-R\t\tETP-like\t6\tNKX2-1+\tMale\tETP\t14\n2.035164695\t-5.211660563\tPAWGTW\tKMT2A\tKMT2A\tKMT2A\tKMT2A--MLLT1\tTCRB\tFusion\tKMT2A\t23\tOther\tMale\tNon-ETP\t18\n-4.280431647\t0.58013022\tPAWGWC\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2 enhancer SNV/Indel, TAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t21\n2.677165132\t-3.74452418\tPAWGWD\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tETP-like\t16\tHOXA9+\tMale\tETP\t17\n-1.884308953\t4.943752587\tPAWGWJ\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t15\n1.948739867\t4.820616544\tPAWGXI\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n-3.330921788\t2.261818469\tPAWGXM\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLMO2\tLMO2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t7\n1.925204854\t4.929847062\tPAWGXT\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t20\n3.138128381\t2.859673083\tPAWGXW\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n0.451546292\t0.704573989\tPAWGYN\tTAL1 DP-like\tTAL1 DP-like Jak\t\t\tTCRB\t\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t15\n1.238299232\t-4.415790259\tPAWGYU\tNUP98\tNUP98\tNUP98\tNUP98--RAP1GDS1\tTCRG\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA13+\tMale\tNon-ETP\t10\n-3.524391074\t-1.292247712\tPAWGYW\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--MGST1, LMO3--TCR\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t10\n-2.102077742\t0.271515668\tPAWGYX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 enhancer gain\tTCRG,TCRD\tIntergenic SNV/Indel\tTAL1 DP-like\t7\tOther\tFemale\tNear-ETP\t5\n-1.324386497\t4.010888875\tPAWGZM\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1--chromothripsis\tTCRB,TCRG\tchromothripsis\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t8\n3.354789357\t2.690517724\tPAWHDJ\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t20\n3.496767621\t2.294930757\tPAWHEW\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t5\n1.859534364\t4.79284364\tPAWHGU\tTLX1\t\tTLX1\tTLX1 Intergenic Inversion\tTCRB\tIntergenic INV\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n2.796899896\t-3.762654483\tPAWHHA\tETP-like\t\t\t\tTCRG\t\tETP-like\t16\tHOXA13+\tMale\tNon-ETP\t15\n-2.219380755\t0.479295672\tPAWHHG\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, ETV6--PDGFRB\tTCRB\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t11\n2.303775411\t-4.589688003\tPAWHHJ\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tTCRG,TCRD\tFusion\tKMT2A\t14\tHOXA9+\tFemale\tNon-ETP\t2\n3.704843621\t2.466339887\tPAWHHV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t7\n-2.557178516\t1.387373865\tPAWHIG\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t21\n2.851940732\t-3.672362029\tPAWHJR\tETP-like\tMLLT10 ETP-like\tMLLT10\tMLLT10--PICALM\tNo TCR-R\tFusion\tETP-like\t16\tHOXA13+\tFemale\tNon-ETP\t15\n2.319319348\t3.279634297\tPAWHMI\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRA,TCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-1.342059803\t1.188217462\tPAWHPE\tTAL1 DP-like\tTAL1 DP-like Other\tRUNX2\tRUNX2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t7\n-4.443423171\t0.028971002\tPAWHRW\tTAL1 αβ-like\tTAL1 αβ-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t6\n-3.460644622\t-2.206732213\tPAWHXB\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tMale\tNon-ETP\t3\n3.886439424\t-3.446566045\tPAWIBU\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--BCL11B enhancer\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNon-ETP\t13\n3.160159688\t-3.61867398\tPAWIDD\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--ELL\tNo TCR-R\tFusion\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t11\n3.872359376\t1.478942812\tPAWIEX\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t9\n-1.07459027\t4.319651425\tPAWIGC\tNKX2-1\tNKX2-1 Other\tNKX2-1\tNKX2-1 Intergenic Loss\tTCRA,TCRB,TCRG\tIntergenic Loss\tNKX2-1\t26\tNKX2-1+\tFemale\tNon-ETP\t6\n-4.274362941\t-1.616874277\tPAWIIR\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t17\n2.861453633\t2.804381192\tPAWIIZ\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n1.803563933\t4.899618924\tPAWILT\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t6\n2.412302594\t-4.464780032\tPAWIMC\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--SIPA1\tTCRG,TCRD\tFusion\tETP-like\t14\tHOXA9+\tMale\tNon-ETP\t4\n3.020306687\t2.959317267\tPAWIPA\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer\tTCRB,TCRG\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t6\n-3.263715405\t2.177139104\tPAWIPN\tTAL1 DP-like\tTAL1 DP-like Jak\tLMO2\tTAL1 enhancer SNV/Indel, LMO2--TCR, LMO2 Intergenic Loss (CAPRIN1)\tTCRB\tTCR-R\tTAL1 DP-like\t2\tOther\tMale\tNon-ETP\t2\n1.790272336\t-5.745607078\tPAWIPY\tKMT2A\tKMT2A\tKMT2A\tKMT2A--AFDN\tTCRB\tFusion\tKMT2A\t23\tHOXA9+\tMale\tNon-ETP\t13\n-4.325321336\t0.093453013\tPAWIRJ\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t5\n-4.184650083\t-1.661161959\tPAWIRN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t12\n-4.030746598\t1.59255153\tPAWIRR\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t15\n-3.345023532\t2.244849504\tPAWISF\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB,TCRG\tFusion\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t13\n-3.678292651\t-1.456549465\tPAWIWN\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t14\n-2.867658396\t-1.427432477\tPAWIWS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t8\n-3.009872575\t1.251059473\tPAWIXS\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t11\n4.499154191\t2.156195224\tPAWJDA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t4\tTLX3+\tFemale\tNon-ETP\t10\n3.150334458\t-3.752897918\tPAWJDL\tETP-like\tNUP98 ETP-like\tNUP98\tNUP98--RAP1GDS1\tNo TCR-R\tFusion\tETP-like\t16\tHOXA13+\tFemale\tNon-ETP\t17\n-3.378092427\t-1.645634233\tPAWJDS\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO1 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tLMO1+\tFemale\tNon-ETP\t4\n3.783942323\t2.129205525\tPAWJIN\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t18\n0.630540352\t0.473806978\tPAWJJC\tTME-enriched\t\tHOXA9\tHOXA9--TCR\tTCRB\tTCR-R\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t18\n2.152922015\t-4.974198043\tPAWJJL\tETP-like\tKMT2A ETP-like\tKMT2A\tKMT2A--AFDN\tNo TCR-R\tFusion\tKMT2A\t14\tHOXA9+\tFemale\tNon-ETP\t14\n-3.67214622\t1.673133195\tPAWJKL\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1 enhancer SNV/Indel, LMO2 Intergenic Loss (RAG2)\tTCRB\tIntergenic SNV/Indel\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t6\n-3.780366797\t-1.584489643\tPAWJKM\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL, LMO2 enhancer SNV/Indel\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t2\n-3.626321692\t1.604195893\tPAWJKX\tTAL1 DP-like\tTAL1 DP-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 DP-like\t17\tOther\tFemale\tNon-ETP\t11\n-1.783558388\t1.055198491\tPAWJLL\tTAL1 DP-like\tTAL1 DP-like Other\tMYB\tMYB--FOXN1\tNo TCR-R\tFusion\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t8\n0.708550196\t0.261805147\tPAWJRH\tTME-enriched\t\t\t\tNo TCR-R\t\tTME-enriched\t20\tOther\tMale\tNon-ETP\t15\n3.650495153\t-3.346659362\tPAWJTF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TCR\tNo TCR-R\tTCR-R\tETP-like\t9\tHOXA13+\tMale\tNon-ETP\t8\n-3.897704501\t-0.398328244\tPAWJUJ\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL\tTCRB\tFusion\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t14\n2.929737191\t2.30987984\tPAWJVB\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRB\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t6\n-1.627371718\t2.008988679\tPAWJVJ\tTAL1 DP-like\tTAL1 DP-like RPL10\t\t\tTCRB\t\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t4\n3.983132939\t1.917755783\tPAWJWT\tTLX3\tTLX3 Immature\tTLX3\tTLX3--NME enhancer, NUP214--ABL1\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t15\n-4.566124101\t-0.032384767\tPAWJYN\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tTAL1\tTAL1 enhancer SNV/Indel\tTCRB\tIntergenic SNV/Indel\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t3\n2.404172998\t3.215027869\tPAWKAN\tTLX3\tTLX3 DP-like\tTLX3\tTLX3--BCL11B enhancer, LMO2--TCR\tTCRB\tTranslocation\tTLX3\t24\tTLX3+\tMale\tNon-ETP\t7\n1.94301496\t4.85850364\tPAWKAP\tTLX1\t\tTLX1\tTLX1--TCR\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t16\n-1.884250481\t4.878311933\tPAWKBK\tNKX2-1\tNKX2-1 TCR\t\t\tTCRB\t\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t7\n-3.890216489\t-1.707931101\tPAWKIT\tTAL1 αβ-like\tTAL1 αβ-like Other\tTAL1\tTAL1--STIL, LMO2 enhancer gain\tTCRB\tFusion\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t6\n-3.055266757\t1.363989175\tPAWKKF\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t9\n3.991969209\t2.826595843\tPAWKKY\tTLX3\tTLX3 Immature\tTLX3\tTLX3--TCR, TLX3--CALN1\tTCRG,TCRD\tTCR-R\tTLX3\t4\tTLX3+\tMale\tNon-ETP\t4\n-2.166925509\t-0.742326676\tPAWKLD\tTAL1 αβ-like\tTAL1 αβ-like Other\t\t\tTCRG,TCRD\t\tTAL1 αβ-like\t7\tOther\tFemale\tNon-ETP\t6\n3.167158704\t2.052161277\tPAWKNV\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer\tTCRG,TCRD\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t11\n-1.656151135\t4.340438188\tPAWKPT\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRB\tTCR-R\tNKX2-1\t15\tNKX2-1+\tMale\tNon-ETP\t3\n-4.609952111\t-0.427381366\tPAWKSC\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2--TCR, TAL1 enhancer gain\tTCRB\tTCR-R\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t10\n1.482002835\t4.365972341\tPAWKUU\tTLX1\t\tTLX1\tTLX1--TCR, NUP214--ABL1\tTCRB\tTCR-R\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t12\n3.88019381\t-3.274727284\tPAWKXF\tETP-like\tHOXA13 ETP-like\tHOXA13\tHOXA13--TBC1D5\tNo TCR-R\tTranslocation\tETP-like\t9\tHOXA13+\tFemale\tNon-ETP\t17\n-1.924693603\t1.214437903\tPAWKXN\tTAL1 DP-like\tTAL1 DP-like LEF1/LYL1\tLYL1\tLYL1--TCR, LMO2 Intergenic Loss (RAG2)\tNo TCR-R\tTCR-R\tTAL1 DP-like\t8\tOther\tMale\tNon-ETP\t13\n3.480089288\t-2.568755567\tPAWKXT\tETP-like\tZFP36L2 ETP-like\tZFP36L2\tZFP36L2 SV\tNo TCR-R\tIntragenic INV\tETP-like\t6\tOther\tMale\tNon-ETP\t17\n-2.267078657\t2.175808967\tPAWKYL\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--STIL, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tOther\tMale\tNon-ETP\t14\n-2.600700159\t-1.119965016\tPAWKZN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tTAL1\tTAL1--STIL\tTCRA\tFusion\tTAL1 αβ-like\t8\tOther\tMale\tNon-ETP\t15\n0.088016253\t0.571300865\tPAWKZT\tTME-enriched\t\t\t\tTCRB\t\tTME-enriched\t20\tOther\tFemale\tNon-ETP\t5\n-4.309512515\t-0.848192512\tPAWKZX\tTAL1 αβ-like\tTAL1 αβ-like Loss 6q\tLMO2\tLMO2 enhancer gain, TAL1 enhancer SNV/Indel\tTCRB\tEnhancer Gain\tTAL1 αβ-like\t11\tOther\tMale\tNon-ETP\t13\n-2.200089653\t2.088976205\tPAWKZZ\tTAL1 DP-like\tTAL1 DP-like RPL10\tTAL1\tTAL1--NFYC, RPL10\tTCRB\tFusion\tTAL1 DP-like\t19\tLMO1+\tMale\tNon-ETP\t2\n-3.881527324\t1.187152684\tPAWLAE\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1--STIL\tTCRA,TCRB\tTCR-R\tTAL1 DP-like\t18\tOther\tMale\tNon-ETP\t4\n3.289837461\t1.538992584\tPAWLCA\tTLX3\tTLX3 Immature\tTLX3\tTLX3--BCL11B enhancer, NUP214--ABL1\tTCRB,TCRG\tTranslocation\tTLX3\t5\tTLX3+\tMale\tNon-ETP\t5\n1.058191876\t-4.253814399\tPAWLFC\tMLLT10\tMLLT10\tMLLT10\tMLLT10--PICALM\tTCRG,TCRD\tFusion\tHOXA9 TCR/MLT10\t12\tHOXA9+\tMale\tNon-ETP\t7\n1.563181977\t4.753036321\tPAWLGM\tTLX1\t\tTLX1\tTLX1--TCR\tTCRG,TCRD\tTCR-R\tTLX1\t21\tTLX1+\tFemale\tNon-ETP\t17\n-1.632948298\t1.112188399\tPAWLHT\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL2--TCR\tTCRB\tTCR-R\tTAL1 DP-like\t8\tTAL2+\tMale\tNon-ETP\t12\n-1.171710004\t4.175862611\tPAWLLU\tNKX2-1\tNKX2-1 TCR\tNKX2-1\tNKX2-1--TCR\tTCRG\tTCR-R\tNKX2-1\t26\tNKX2-1+\tMale\tNon-ETP\t12\n5.413425546\t-2.407160937\tPAWLMK\tBCL11B\t\tBCL11B\tBCL11B enhancer amplification\tNo TCR-R\tEnhancer Gain\tBCL11B\t25\tOther\tMale\tNon-ETP\t21\n-3.199735541\t1.115308345\tPAWLMP\tTAL1 DP-like\tTAL1 DP-like Other\tLMO2\tLMO2--TCR, TAL1 enhancer SNV/Indel\tTCRB\tTCR-R\tTAL1 DP-like\t17\tOther\tMale\tNon-ETP\t3\n1.62625299\t4.576972306\tPAWLPU\tTLX1\t\tTLX1\tTLX1 Intergenic Loss\tTCRG,TCRD\tIntergenic Loss\tTLX1\t21\tTLX1+\tMale\tNon-ETP\t4\n0.719383698\t0.672996343\tPAWLSM\tTME-enriched\t\tTLX3\tTLX3--NME enhancer\tTCRB\tTranslocation\tTME-enriched\t20\tTLX3+\tMale\tNon-ETP\t13\n-3.61052074\t-1.838399708\tPAWLSN\tTAL1 αβ-like\tTAL1 αβ-like Notch wt\tLMO2\tLMO2 Intergenic Loss (CAPRIN1), TAL1 enhancer SNV/Indel, SOX9--TCR\tTCRA,TCRB\tIntergenic Loss\tTAL1 αβ-like\t3\tOther\tMale\tNon-ETP\t3\n-4.484052796\t0.345022709\tPAWLYX\tTAL1 DP-like\tTAL1 DP-like Other\tLMO1\tLMO1--TCR, TAL1--THRAP3\tTCRB\tTCR-R\tTAL1 DP-like\t17\tLMO1+\tMale\tNon-ETP\t15"
	}
	}
}

UMAP: T-ALL Subtypes

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