Visualization Community | St. Jude Cloud

Epigenetic Landscape of Rhabdomyosarcoma Subtypes

St. Jude Children's Research Hospital

50 4

Sep 10, 2018

PMID 30146332

1.4K

RNA Sequencing

ChIP Sequencing

Here we compare the epigenetic states of ERMS samples to ARMS cases. This is a summary view of HMM states for patient derived xenografts of pediatric solid tumors. Hovering over each colored bars reveals the HMM state. The FPKM expression value of the first gene in the viewing window is displayed as a bar plot on the right.

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runproteinpaint({
  "host": "https://proteinpaint.stjude.org",
  "holder": visualizationContainer[0],
  "parseurl": true,
  "studyview": {
    "genome": "hg19",
    "name": "RHB",
    "assays": [
      "SE",
      "BRD4",
      "H3K27Ac",
      "H3K27me3",
      "H3K36me3",
      "H3K4me1",
      "H3K4me2",
      "H3K4me3",
      "H3K9-14Ac",
      "H3K9me3",
      "RNAPolII",
      "INPUT",
      "WGBS"
    ],
    "trackfacets": [
      {
        "name": "CHIPSEQ and WGBS",
        "samples": [
          "SJNORM012476_FQ21-Normal",
          "SJNORM010254_Myoblast-Normal",
          "SJNORM010254_Myotube-Normal",
          "SJRHB000026_X1_Rec3_(ERMS)",
          "SJRHB000026_X2_Rec4_(ERMS)",
          "SJRHB010927_X1_Prim_(ERMS)",
          "SJRHB010928_X1_Rec1_(ERMS)",
          "SJRHB011_Y_Prim_(ERMS)",
          "SJRHB011_X_Rec1_(ERMS)",
          "SJRHB012405_X1_Rec1_(ERMS)",
          "SJRHB012_Y_Rec1_SiteA_(ERMS)",
          "SJRHB012_Z_Rec1_SiteB_(ERMS)",
          "SJRHB013758_X1_Prim_(ERMS)",
          "SJRHB013758_X2_Rec1_(ERMS)",
          "SJRHB010463_X16_Rec1_(ARMS)",
          "SJRHB010468_X1_Prim_(ARMS)",
          "SJRHB013757_X1_Prim_(ARMS)",
          "SJRHB013759_X1_Rec1_(ARMS)",
          "SJRHB015720_X1_Rec2_(SCLEROS)"
        ],
        "nosortassay": 1,
        "nosortsample": 1,
        "assays": [
          "WGBS",
          "SE",
          "BRD4",
          "H3K27Ac",
          "H3K27me3",
          "H3K36me3",
          "H3K4me1",
          "H3K4me2",
          "H3K4me3",
          "H3K9-14Ac",
          "H3K9me3",
          "RNAPolII",
          "INPUT"
        ]
      }
    ],
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        "type": "bedj",
        "height": 10
      },
      "SJNORM010254_Myoblast-Normal": {
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          "sampleID": "SJNORM010254_Myoblast-Normal",
          "toppad": 1,
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          "type": "bedj",
          "onerow": 1,
          "name": "SJNORM010254_Myoblast-Normal SE"
        }
      },
      "SJNORM010254_Myotube-Normal": {
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        }
      },
      "SJNORM012476_FQ21-Normal": {
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        }
      },
      "SJRHB000026_X1_Rec3_(ERMS)": {
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      },
      "SJRHB000026_X2_Rec4_(ERMS)": {
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          "sampleID": "SJRHB000026_MAST85-ERMS",
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          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB000026_X2_Rec4_(ERMS) SE"
        }
      },
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          "onerow": 1,
          "name": "SJRHB010463_X16_Rec1_(ARMS) SE"
        }
      },
      "SJRHB010468_X1_Prim_(ARMS)": {
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        }
      },
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        }
      },
      "SJRHB011_Y_Prim_(ERMS)": {
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          "sampleID": "SJRHB011_Rh70-ERMS",
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      },
      "SJRHB011_X_Rec1_(ERMS)": {
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          "type": "bedj",
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      },
      "SJRHB012405_X1_Rec1_(ERMS)": {
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          "sampleID": "SJRHB012405_MAST100-ERMS",
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        }
      },
      "SJRHB012_Y_Rec1_SiteA_(ERMS)": {
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          "name": "SJRHB012_Y_Rec1_SiteA_(ERMS) SE"
        }
      },
      "SJRHB012_Z_Rec1_SiteB_(ERMS)": {
        "SJRHB012_Z_Rec1_SiteB_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB012_Rh75-ERMS",
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          "name": "SJRHB012_Z_Rec1_SiteB_(ERMS) SE"
        }
      },
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          "sampleID": "SJRHB013758_MAST111-ERMS",
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          "name": "SJRHB013758_X1_Prim_(ERMS) SE"
        }
      },
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        }
      },
      "SJRHB013759_X1_Rec1_(ARMS)": {
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          "sampleID": "SJRHB013759_MAST118-ARMS",
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          "name": "SJRHB013759_X1_Rec1_(ARMS) SE"
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      },
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          "sampleID": "SJRHB015720_MAST161-Spindle",
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          "name": "SJRHB015720_X1_Rec2_(SCLEROS) SE"
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        }
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        }
      },
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      },
      "SJRHB015720_X1_Rec2_(SCLEROS)": {
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    },
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        }
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        }
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        }
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        }
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        "SJRHB015720_X1_Rec2_(SCLEROS)": {
          "pcolor": "rgb(128,128,128)",
          "pcolor2": "rgb(128,128,128)",
          "scale": {
            "max": 1,
            "min": 0
          },
          "file": "files/rhb/RHB/WGBS/WGBS-SJRHB015720_X1_Rec2_(SCLEROS).bw",
          "height": 15
        }
      }
    },
    "show_browser": 1,
    "hide_navigation": 1,
    "browserview": {
      "nativetracks": [
        "RefGene"
      ],
      "position": "chr6:117335725-117963324",
      "nobox": true,
      "tracks": [
        {
          "type": "profilegenevalue",
          "name": "RHB chromHMM",
          "genevaluetklst": [
            {
              "file": "files/rhb/fpkm.gz",
              "barcolor": "#90C3D4",
              "matchname": "sampleID",
              "name": "FPKM"
            },
            {
              "file": "files/rhb/protein.gz",
              "barcolor": "#D4A190",
              "axistickformat": ".0e",
              "matchname": "sampleID",
              "name": "protein"
            },
            {
              "file": "files/rhb/phosphorylation.gz",
              "name": "phosphorylation",
              "axistickformat": ".0e",
              "multivaluekey": "site",
              "matchname": "sampleID",
              "sitekeytrickysort": 1
            }
          ],
          "legendimg": {
            "file": "files/rhb/chromhmm.png",
            "width": 610,
            "height": 492
          },
          "tracks": [
            {
              "type": "bedj",
              "file": "files/rhb/fq21.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "FQ 21",
              "name": "FQ 21"
            },
            {
              "type": "bedj",
              "file": "files/rhb/myoblast.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "Myoblast",
              "name": "Myoblast"
            },
            {
              "type": "bedj",
              "file": "files/rhb/myotube.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "Myotube",
              "name": "Myotube"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast100.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 100",
              "name": "SJRHB012405_X1_Rec1 (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast111.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 111",
              "name": "SJRHB013758_X1_Prim (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast139.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 139",
              "name": "SJRHB013758_X2_Rec1 (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast39.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 39",
              "name": "SJRHB000026_X1_Rec3 (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast85.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 85",
              "name": "SJRHB000026_X2_Rec4 (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast71.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 71",
              "name": "SJRHB010927_X1_Prim (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast74.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 74",
              "name": "SJRHB010928_X1_Rec1 (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/rh70.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "Rh 70",
              "name": "SJRHB011_Y_Prim (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/rh73.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "Rh 73",
              "name": "SJRHB011_X_Rec1 (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/rh74.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "Rh 74",
              "name": "SJRHB012_Y_Rec1_SiteA (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/rh75.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "Rh 75",
              "name": "SJRHB012_Z_Rec1_SiteB (ERMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast161.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 161",
              "name": "SJRHB015720_X1_Rec2 (SCLEROS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast35.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 35",
              "name": "SJRHB010468_X1_Prim (ARMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast60.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 60",
              "name": "SJRHB010463_X16_Rec1 (ARMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast95.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 95",
              "name": "SJRHB013757_X1_Prim (ARMS)"
            },
            {
              "type": "bedj",
              "file": "files/rhb/mast118.gz",
              "stackheight": 20,
              "stackspace": 1,
              "onerow": 1,
              "sampleID": "MAST 118",
              "name": "SJRHB013759_X1_Rec1 (ARMS)"
            }
          ]
        }
      ]
    }
  }
});

Visualization Code

runproteinpaint({
  "host": "https://proteinpaint.stjude.org",
  "holder": visualizationContainer[0],
  "parseurl": true,
  "studyview": {
    "genome": "hg19",
    "name": "RHB",
    "assays": [
      "SE",
      "BRD4",
      "H3K27Ac",
      "H3K27me3",
      "H3K36me3",
      "H3K4me1",
      "H3K4me2",
      "H3K4me3",
      "H3K9-14Ac",
      "H3K9me3",
      "RNAPolII",
      "INPUT",
      "WGBS"
    ],
    "trackfacets": [
      {
        "name": "CHIPSEQ and WGBS",
        "samples": [
          "SJNORM012476_FQ21-Normal",
          "SJNORM010254_Myoblast-Normal",
          "SJNORM010254_Myotube-Normal",
          "SJRHB000026_X1_Rec3_(ERMS)",
          "SJRHB000026_X2_Rec4_(ERMS)",
          "SJRHB010927_X1_Prim_(ERMS)",
          "SJRHB010928_X1_Rec1_(ERMS)",
          "SJRHB011_Y_Prim_(ERMS)",
          "SJRHB011_X_Rec1_(ERMS)",
          "SJRHB012405_X1_Rec1_(ERMS)",
          "SJRHB012_Y_Rec1_SiteA_(ERMS)",
          "SJRHB012_Z_Rec1_SiteB_(ERMS)",
          "SJRHB013758_X1_Prim_(ERMS)",
          "SJRHB013758_X2_Rec1_(ERMS)",
          "SJRHB010463_X16_Rec1_(ARMS)",
          "SJRHB010468_X1_Prim_(ARMS)",
          "SJRHB013757_X1_Prim_(ARMS)",
          "SJRHB013759_X1_Rec1_(ARMS)",
          "SJRHB015720_X1_Rec2_(SCLEROS)"
        ],
        "nosortassay": 1,
        "nosortsample": 1,
        "assays": [
          "WGBS",
          "SE",
          "BRD4",
          "H3K27Ac",
          "H3K27me3",
          "H3K36me3",
          "H3K4me1",
          "H3K4me2",
          "H3K4me3",
          "H3K9-14Ac",
          "H3K9me3",
          "RNAPolII",
          "INPUT"
        ]
      }
    ],
    "SE": {
      "config": {
        "pcolor": "0,0,255",
        "type": "bedj",
        "height": 10
      },
      "SJNORM010254_Myoblast-Normal": {
        "SJNORM010254_Myoblast-Normal": {
          "stackspace": 1,
          "sampleID": "SJNORM010254_Myoblast-Normal",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJNORM010254_Myoblast-Normal.gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJNORM010254_Myoblast-Normal SE"
        }
      },
      "SJNORM010254_Myotube-Normal": {
        "SJNORM010254_Myotube-Normal": {
          "stackspace": 1,
          "sampleID": "SJNORM010254_Myotube-Normal",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJNORM010254_Myotube-Normal.gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJNORM010254_Myotube-Normal SE"
        }
      },
      "SJNORM012476_FQ21-Normal": {
        "SJNORM012476_FQ21-Normal": {
          "stackspace": 1,
          "sampleID": "SJNORM012476_FQ21-Normal",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJNORM012476_FQ21-Normal.gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJNORM012476_FQ21-Normal SE"
        }
      },
      "SJRHB000026_X1_Rec3_(ERMS)": {
        "SJRHB000026_X1_Rec3_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB000026_MAST39-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB000026_X1_Rec3_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB000026_X1_Rec3_(ERMS) SE"
        }
      },
      "SJRHB000026_X2_Rec4_(ERMS)": {
        "SJRHB000026_X2_Rec4_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB000026_MAST85-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB000026_X2_Rec4_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB000026_X2_Rec4_(ERMS) SE"
        }
      },
      "SJRHB010463_X16_Rec1_(ARMS)": {
        "SJRHB010463_X16_Rec1_(ARMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB010463_MAST60-ARMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB010463_X16_Rec1_(ARMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB010463_X16_Rec1_(ARMS) SE"
        }
      },
      "SJRHB010468_X1_Prim_(ARMS)": {
        "SJRHB010468_X1_Prim_(ARMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB010468_MAST35-ARMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB010468_X1_Prim_(ARMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB010468_X1_Prim_(ARMS) SE"
        }
      },
      "SJRHB010927_X1_Prim_(ERMS)": {
        "SJRHB010927_X1_Prim_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB010927_MAST71-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB010927_X1_Prim_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB010927_X1_Prim_(ERMS) SE"
        }
      },
      "SJRHB010928_X1_Rec1_(ERMS)": {
        "SJRHB010928_X1_Rec1_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB010928_MAST74-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB010928_X1_Rec1_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB010928_X1_Rec1_(ERMS) SE"
        }
      },
      "SJRHB011_Y_Prim_(ERMS)": {
        "SJRHB011_Y_Prim_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB011_Rh70-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB011_Y_Prim_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB011_Y_Prim_(ERMS) SE"
        }
      },
      "SJRHB011_X_Rec1_(ERMS)": {
        "SJRHB011_X_Rec1_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB011_Rh73-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB011_X_Rec1_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB011_X_Rec1_(ERMS) SE"
        }
      },
      "SJRHB012405_X1_Rec1_(ERMS)": {
        "SJRHB012405_X1_Rec1_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB012405_MAST100-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB012405_X1_Rec1_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB012405_X1_Rec1_(ERMS) SE"
        }
      },
      "SJRHB012_Y_Rec1_SiteA_(ERMS)": {
        "SJRHB012_Y_Rec1_SiteA_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB012_Rh74-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB012_Y_Rec1_SiteA_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB012_Y_Rec1_SiteA_(ERMS) SE"
        }
      },
      "SJRHB012_Z_Rec1_SiteB_(ERMS)": {
        "SJRHB012_Z_Rec1_SiteB_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB012_Rh75-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB012_Z_Rec1_SiteB_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB012_Z_Rec1_SiteB_(ERMS) SE"
        }
      },
      "SJRHB013757_X1_Prim_(ARMS)": {
        "SJRHB013757_X1_Prim_(ARMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB013757_MAST95-ARMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB013757_X1_Prim_(ARMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB013757_X1_Prim_(ARMS) SE"
        }
      },
      "SJRHB013758_X1_Prim_(ERMS)": {
        "SJRHB013758_X1_Prim_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB013758_MAST111-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB013758_X1_Prim_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB013758_X1_Prim_(ERMS) SE"
        }
      },
      "SJRHB013758_X2_Rec1_(ERMS)": {
        "SJRHB013758_X2_Rec1_(ERMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB013758_MAST139-ERMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB013758_X2_Rec1_(ERMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB013758_X2_Rec1_(ERMS) SE"
        }
      },
      "SJRHB013759_X1_Rec1_(ARMS)": {
        "SJRHB013759_X1_Rec1_(ARMS)": {
          "stackspace": 1,
          "sampleID": "SJRHB013759_MAST118-ARMS",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB013759_X1_Rec1_(ARMS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB013759_X1_Rec1_(ARMS) SE"
        }
      },
      "SJRHB015720_X1_Rec2_(SCLEROS)": {
        "SJRHB015720_X1_Rec2_(SCLEROS)": {
          "stackspace": 1,
          "sampleID": "SJRHB015720_MAST161-Spindle",
          "toppad": 1,
          "bottompad": 1,
          "file": "files/rhb/RHB/SE/SE.SJRHB015720_X1_Rec2_(SCLEROS).gz",
          "stackheight": 15,
          "type": "bedj",
          "onerow": 1,
          "name": "SJRHB015720_X1_Rec2_(SCLEROS) SE"
        }
      }
    },
    "BRD4": {
      "config": {
        "pcolor": "255,0,255",
        "type": "bigwig",
        "height": 10
      },
      "SJNORM010254_Myoblast-Normal": {
        "SJNORM010254_Myoblast-Normal": {
          "pcolor": "rgb(255,0,255)",
          "pcolor2": "rgb(255,0,255)",
          "scale": {
            "max": 50,
            "min": 1
          },
          "file": "files/rhb/RHB/CHIPSEQ/SJNORM010254_Myoblast-Normal-BRD4.bw",
          "height": 15
        }
      },
      "SJNORM010254_Myotube-Normal": {
        "SJNORM010254_Myotube-Normal": {
          "pcolor": "rgb(255,0,255)",
          "pcolor2": "rgb(255,0,255)",
          "scale": {
            "max": 50,
            "min": 1
          },
          "file": "files/rhb/RHB/CHIPSEQ/SJNORM010254_Myotube-Normal-BRD4.bw",
          "height": 15
        }
      },
      "SJNORM012476_FQ21-Normal": {
        "SJNORM012476_FQ21-Normal": {
          "pcolor": "rgb(255,0,255)",
          "pcolor2": "rgb(255,0,255)",
          "scale": {
            "max": 50,
            "min": 1
          },
          "file": "files/rhb/RHB/CHIPSEQ/SJNORM012476_FQ21-Normal-BRD4.bw",
          "height": 15
        }
      },
      "SJRHB000026_X1_Rec3_(ERMS)": {
        "SJRHB000026_X1_Rec3_(ERMS)": {
          "pcolor": "rgb(255,0,255)",
          "pcolor2": "rgb(255,0,255)",
          "scale": {
            "max": 50,
            "min": 1
          },
          "file": "files/rhb/RHB/CHIPSEQ/SJRHB000026_X1_Rec3_(ERMS)-BRD4.bw",
          "height": 15
        }
      },
      "SJRHB000026_X2_Rec4_(ERMS)": {
        "SJRHB000026_X2_Rec4_(ERMS)": {
          "pcolor": "rgb(255,0,255)",
          "pcolor2": "rgb(255,0,255)",
          "scale": {
            "max": 50,
            "min": 1
          },
          "file": "files/rhb/RHB/CHIPSEQ/SJRHB000026_X2_Rec4_(ERMS)-BRD4.bw",
          "height": 15
        }
      },
      "SJRHB010463_X16_Rec1_(ARMS)": {
        "SJRHB010463_X16_Rec1_(ARMS)": {
          "pcolor": "rgb(255,0,255)",
          "pcolor2": "rgb(255,0,255)",
          "scale": {
            "max": 50,
            "min": 1
          },
          "file": "files/rhb/RHB/CHIPSEQ/SJRHB010463_X16_Rec1_(ARMS)-BRD4.bw",
          "height": 15
        }
      },
      "SJRHB010468_X1_Prim_(ARMS)": {
        "SJRHB010468_X1_Prim_(ARMS)": {
          "pcolor": "rgb(255,0,255)",
          "pcolor2": "rgb(255,0,255)",
          "scale": {
            "max": 50,
            "min": 1
          },
          "file": "files/rhb/RHB/CHIPSEQ/SJRHB010468_X1_Prim_(ARMS)-BRD4.bw",
          "height": 15
        }
      },
      "SJRHB010927_X1_Prim_(ERMS)": {
        "SJRHB010927_X1_Prim_(ERMS)": {
          "pcolor": "rgb(255,0,255)",
          "pcolor2": "rgb(255,0,255)",
          "scale": {
            "max": 50,
            "min": 1
          },
          "file": "files/rhb/RHB/CHIPSEQ/SJRHB010927_X1_Prim_(ERMS)-BRD4.bw",
          "height": 15
        }
      },
      "SJRHB010928_X1_Rec1_(ERMS)": {
        "SJRHB010928_X1_Rec1_(ERMS)": {
          "pcolor": "rgb(255,0,255)",
          "pcolor2": "rgb(255,0,255)",
          "scale": {
            "max": 50,
            "min": 1
          },
          "file": "files/rhb/RHB/CHIPSEQ/SJRHB010928_X1_Rec1_(ERMS)-BRD4.bw",
          "height": 15
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});

Epigenetic Landscape of Rhabdomyosarcoma Subtypes

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