PAX5-driven subtypes of B-progenitor acute lymphoblastic leukemia (GenomePaint)

St. Jude Children's Research Hospital

St. Jude Children's Research Hospital

Jan 28, 2019

16.2K

Whole Genome Sequencing
Whole Exome Sequencing
RNA Sequencing
SNP Array

CNV log ratio is displayed for B-ALL subtypes (total number samples = 1988). Mousing over colored bars displays metadata for each sample. Additionally, you can download the gene expression values for all 1988 samples as log2(FPKM) (https://proteinpaint.stjude.org/ppSupport/static/hg19/pan-all/B-ALL-subtyping.FPKM-UQ10-log2.txt.zip), rlog values ( https://proteinpaint.stjude.org/ppSupport/static/hg19/pan-all/panALL-1988S-rlog.subtype.txt.gz), HTSeq raw read counts (https://proteinpaint.stjude.org/ppSupport/static/hg19/pan-all/BALL-1988S-HTSeq.zip) or HTSeq files for normal samples ( https://proteinpaint.stjude.org/ppSupport/static/hg19/pan-all/Normal.HTSeq.zip). Finally, you can download the gene expression signatures for each subtype here (https://proteinpaint.stjude.org/ppSupport/static/hg19/pan-all/B-ALL-subtype-signature.xlsx).

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