t-SNE plot of 903 pediatric blood cancer RNA-Seq profiles including 71 PDX samples

St. Jude Children's Research Hospital

St. Jude Children's Research Hospital

Apr 10, 2021


Pediatric Cancer
RNA Sequencing

The expression landscape of 903 RNA-Seq fresh frozen blood cancer samples which includes 71 blood cancer xenografts samples is displayed via a t-SNE plot generated using the St. Jude Cloud RNA-Seq Expression Classification analysis workflow. Diagnosis subtypes are denoted by color as per the legend (right). Specific samples, groups, or diagnoses can be highlighted by entering them in the search sample box. Pan and zoom functionality allow you to examine regions of the plot in more detail. Further details for each sample can be accessed by mousing over the dots and, for the 903 fresh frozen samples, by accessing the associated metadata (https://platform.stjude.cloud/api/v1/manifest). The non-xenograft samples are available on St. Jude Cloud.

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