Visualization Community | St. Jude Cloud

GenomePaint BigWig Example

Zhou Lab

17 2

Sep 28, 2021

PMID 33434514

3.2K

RNA Sequencing

Data Source

View quantitative data at genomic positions with the BigWig track. Learn more about the BigWig track.

Loading Visualization

runproteinpaint({
  host: "https://proteinpaint.stjude.org",
  holder: visualizationContainer[0],
  parseurl: true,
  block: true,
  nobox: 1,
  noheader: 1,
  genome: "hg19",
  position: "chr12:25334648-25426944",
  nativetracks: "RefGene",
  tracks: [
    {
      "type": "bigwig",
      "url": "http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP100way/hg19.100way.phyloP100way.bw",
      "name": "UCSC phyloP 100ways",
      "height": 100
    },
  ]
});

Visualization Code

runproteinpaint({
  host: "https://proteinpaint.stjude.org",
  holder: visualizationContainer[0],
  parseurl: true,
  block: true,
  nobox: 1,
  noheader: 1,
  genome: "hg19",
  position: "chr12:25334648-25426944",
  nativetracks: "RefGene",
  tracks: [
    {
      "type": "bigwig",
      "url": "http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP100way/hg19.100way.phyloP100way.bw",
      "name": "UCSC phyloP 100ways",
      "height": 100
    },
  ]
});

GenomePaint BigWig Example

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Loading Visualization

Visualization Code