Pediatric blood cancer RNA-Seq t-SNE plot (816 samples)

St. Jude Cloud

St. Jude Cloud

Jan 7, 2021

8.2K

Pediatric Cancer
RNA Sequencing

The expression landscape of 816 RNA-Seq fresh frozen blood cancer samples in St. Jude Cloud is displayed via a t-SNE plot generated using the St. Jude Cloud RNA-Seq Expression Classification analysis workflow. Visualization representative of Figure 4a of McLeod et al. 2021 (https://cancerdiscovery.aacrjournals.org/content/11/5/1082.long). Diagnosis subtypes are denoted by color as per the legend (right). Specific samples, groups, or diagnoses can be highlighted by entering them in the search sample box. Pan and zoom functionality allow you to examine regions of the plot in more detail. Further details for each sample can be accessed by mousing over the dots and by accessing the associated metadata (https://platform.stjude.cloud/api/v1/manifest). These samples are available on St. Jude Cloud.

Read more
Loading Visualization