TOOL

GenomePaint

https://www.cell.com/cancer-cell/fulltext/S1535-6108(20)30659-0

GenomePaint visualizes somatic coding and noncoding alterations from ~3,800 pediatric tumors, along with multi-omics information to reveal oncogene activation by noncoding alterations, enhancer hijacking, aberrant splicing, mutual-exclusivity, mutation signature, and perform Kaplan-Meier analysis. It can be used to visualize your own data with easy customization and embedding on your own page. https://proteinpaint.stjude.org/

See Figures from the Paper here. To use the hg38 genome build go here. Need more help? Go here to read our Help Guides.

Visualizations created with GenomePaint

Loading Visualization

runproteinpaint({
                                    host:           'https://proteinpaint.stjude.org',
                                    holder:         document.getElementById('visualization_container'),
                                    parseurl:       true,
                                    block:          true,
                                    nobox:          1,
                                    noheader:       1,
                                    genome:         'hg19',
                                    position:       'Chr1:47666203-47787150',
                                    nativetracks:   'RefGene',
                                    datasetqueries: [
                                        {
                                            dataset:  'Pediatric2',
                                            querykey: 'svcnv'
                                        }
                                    ],
                                });