TOOL

ProteinPaint

https://www.nature.com/articles/ng.3466

ProteinPaint is the flagship protein-based visualization tool created at St. Jude. You can use it to examine the domains of genes, known isoforms of a given gene, hotspot mutations for single nucleotide variations (SNVs), insertions and deletions (Indels), and structural variations (SVs) in both pediatric and adult cancers, and RNA-seq expression of a given protein in different tumor types. https://proteinpaint.stjude.org/

Loading Visualization

runproteinpaint({
                                    host:                  'https://proteinpaint.stjude.org',
                                    holder:                document.getElementById('visualization_container'),
                                    genome:                'hg19',
                                    gene:                  'TP53',
                                    parseurl:              true,
                                    noheader:              false,
                                    dataset:               'pediatric',
                                    hidedatasetexpression: true,
                                    base_zindex:           1000,
                                });