Visualization Community | St. Jude Cloud

GenomePaint JSON BED Example

Zhou Lab

Sep 28, 2021

3.5K

View genomic feature annotation with the JSON BED track. Hover over an area of interest to see the characterization of that genomic feature. Learn more about the JSON BED track.

Loading Visualization

runproteinpaint({
  host: "https://proteinpaint.stjude.org",
  holder: visualizationContainer[0],
  parseurl: true,
  block: true,
  nobox: 1,
  noheader: 1,
  genome: "hg19",
  tracks: [
    {
      "type": "bedj",
      "name": "gene track",
      "file": "anno/gencode.v34.hg19.gz",
      "stackheight": 16,
      "stackspace": 1,
      color: "teal"
    }
  ]
});

Visualization Code

runproteinpaint({
  host: "https://proteinpaint.stjude.org",
  holder: visualizationContainer[0],
  parseurl: true,
  block: true,
  nobox: 1,
  noheader: 1,
  genome: "hg19",
  tracks: [
    {
      "type": "bedj",
      "name": "gene track",
      "file": "anno/gencode.v34.hg19.gz",
      "stackheight": 16,
      "stackspace": 1,
      color: "teal"
    }
  ]
});

GenomePaint JSON BED Example

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Visualization Code