Visualization Community | St. Jude Cloud

ProteinPaint FusionEditor Example and App

Zhou Lab

Sep 28, 2021

6.1K

RNA Sequencing

The FusionEditor elegantly depicts one or more sample's fusion events in a prioritized list by CICERO rate and event group. Click on a rated group (e.g. HQ in-frame 7) to reveal the fusion events related to the Cicero output. Hover over or click the fusion event for an interactive graphic of the fusion gene and structural variations described here. Please see the documentation for a detailed explanation. Try it with your data! Launch the FusionEditor App.

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const rawtext=`sample	geneA	chrA	posA	ortA	featureA	geneB	chrB	posB	ortB	featureB	sv_ort	readsA	readsB	matchA	matchB	repeatA	repeatB	coverageA	coverageB	ratioA	ratioB	qposA	qposB	contig	type	score	rating	medal	functional effect	frame	sv_refseqA	sv_refseqA_codon	sv_refseqA_exon	sv_refseqA_anchor_type	sv_refseqA_coding_base_number	sv_refseqA_last_coding_base_number	sv_refseqA_AA_index	sv_refseqA_contig_index	sv_refseqB	sv_refseqB_codon	sv_refseqB_exon	sv_refseqB_anchor_type	sv_refseqB_coding_base_number	sv_refseqB_last_coding_base_number	sv_refseqB_AA_index	sv_refseqB_contig_index	sv_AA	sv_desc	sv_processing_exception	sv_general_info	sv_interstitial_AA	sv_frame_index
	StJude_Sample	CD74	chr5	149786753	-	coding	CD74	chr5	149792317	-	coding	>	37	614	69	81	0.566	0.000	1337	23908	0.001	0.517	158	220	TGCTCATTGTTGGAGATAAGGTCGCGCTGGTCATCCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGTGCATCTGGCCACCACCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCTGGACAAACTGACAGTCACCTCCCAGAAGCTTCATGCGCAGGTTCTCCAGCTGCAGGTTCTGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCA	Internal_dup	20750.34	HQ	2	ITD	1,1,1,1,1,1,1,1,1	NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355	87,87,87,87,87,87,87,87,87	2,2,2,2,2,2,2,2,2	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	260,260,260,260,260,260,260,260,260		50,50,50,50,50,50,50,50,50	154,154,154,154,154,154,154,154,154	NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355	-1,-1,-1,-1,-1,-1,-1,-1,-1	1,1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,	483,483,483,891,891,891,699,699,699	74,74,74,74,74,74,74,74,74	224,224,224,224,224,224,224,224,224	LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS	CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8]		geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=2	KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ	2,2,2,2,2,2,2,2,2
	StJude_Sample	CD74	chr5	149786783	-	coding	CD74	chr5	149792317	-	coding	>	8	468	83	84	0.024	0.000	334	3003	0.001	0.517	103	104	ACACGACGCTCTTCCGATCTACACAGGCTTTTCCATCCTGGTGACTCTGCTCCTCGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACA	Internal_dup	5864.68	HQ	2	ITD	0,0,0,0,0,0,0,0,0,2,2,2	NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,,,	,,,,,,,,,,,	2,2,2,2,2,2,2,2,2,,,	,,,,,,,,,,,	230,230,230,230,230,230,230,230,230,,,		,,,,,,,,,,,	,,,,,,,,,,,	NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355,NM_001025158,NM_001025159,NM_004355	-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1	1,1,1,1,1,1,1,1,1,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,,,,	483,483,483,891,891,891,699,699,699,483,891,699	36,36,36,36,36,36,36,36,36,,,	,,,,,,,,,,,	TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,,,	CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8];;;		geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=2	,,,,,,,,,,,	0,0,0,0,0,0,0,0,0,,,
	StJude_Sample	PAX5	chr9	37033986	-	coding	ZCCHC7	chr9	37260450	+	intron	>	33	8	83	175	0.024	0.000	4247	251	0.127	0.066	83	83	CTTTTCCCTGTCCATTCCATCAAGTCCTGAAAAATCAAAATGGATTTAGAGAAAAATTATCCGACTCCTCGGACCAGCAGGACAGTACAAGTTCAAAGTCATTAACAAGTTCAAGATGGCGACAAAGGACCGTTCAACTAAATAGAGGCCCCTTTTGAGAGCAAGCCCATGTGTGACTGCACAAGTTACATACCTGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAAC	ITX	4361.34	HQ	4	CLoss	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3,3,3	NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,,,,	16,16,16,16,,16,16,16,16,,16,16,16,16,16,,16,16,16,16,,16,16,16,16,16,,16,16,16,16,,16,16,16,16,16,,16,16,16,16,,16,,,,	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,,	tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,,,,	43,43,43,43,,43,43,43,43,,43,43,43,43,43,,43,43,43,43,,43,43,43,43,43,,43,43,43,43,,43,43,43,43,43,,43,43,43,43,,43,,,,		27,27,27,27,,27,27,27,27,,27,27,27,27,27,,27,27,27,27,,27,27,27,27,27,,27,27,27,27,,27,27,27,27,27,,27,27,27,27,,27,,,,	83,83,83,83,,83,83,83,83,,83,83,83,83,83,,83,83,83,83,,83,83,83,83,83,,83,83,83,83,,83,83,83,83,83,,83,83,83,83,,83,,,,	NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226	204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204	3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611	1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632	65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,,,,	195,195,195,195,,195,195,195,195,,195,195,195,195,195,,195,195,195,195,,195,195,195,195,195,,195,195,195,195,,195,195,195,195,195,,195,195,195,195,,195,,,,	LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,,,,	PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_032226[3,9];;;;		geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226;not_inframe_due_to_intermediate_stop_codon	VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,,,	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,,,
	StJude_Sample	PAX5	chr9	37033982	-	coding	ZCCHC7	chr9	37302188	+	coding	>	31	63	129	293	0.000	0.017	1041	1903	0.127	0.051	129	131	AAAAAAAAAAAAAAAAAAAAAAAAAGGCACAAAAAAGTGGAAACTTTTCCCTGTCCATTCCATCAAGTCCTGAAAAATCAAAATGGATTTAGAGAAAAATTATCCGACTCCTCGGACCAGCAGGACAGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGGTCATTTATCAAAAAACTGCCCCTTACCACGAAAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGG	ITX	3486.65	HQ	4	Fusion	1,1,1,1,0,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,0,1	NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734	17,17,17,17,,17,17,17,17,,17,17,17,17,17,,17,17,17,17,,17,17,17,17,17,,17,17,17,17,,17,17,17,17,17,,17,17,17,17,,17	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple	46,46,46,46,,46,46,46,46,,46,46,46,46,46,,46,46,46,46,,46,46,46,46,46,,46,46,46,46,,46,46,46,46,46,,46,46,46,46,,46		42,42,42,42,,42,42,42,42,,42,42,42,42,42,,42,42,42,42,,42,42,42,42,42,,42,42,42,42,,42,42,42,42,42,,42,42,42,42,,42	129,129,129,129,,129,129,129,129,,129,129,129,129,129,,129,129,129,129,,129,129,129,129,129,,129,129,129,129,,129,129,129,129,129,,129,129,129,129,,129	NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226	205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205	3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614	1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632	43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43	130,130,130,130,,130,130,130,130,,130,130,130,130,130,,130,130,130,130,,130,130,130,130,130,,130,130,130,130,,130,130,130,130,130,,130,130,130,130,,130	KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW	PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_032226[3,9]		geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1
	StJude_Sample	ATF7IP	chr12	14634119	+	coding	JAK2	chr9	5080229	+	coding	>	30	49	286	210	0.000	0.000	1184	1475	0.176	0.025	287	287	GTGTCACGACCATTGCAACCCATACAACCAGCACCGCCTCTTCAACCATCTGGGGTGCCAACAAGTGGACCATCTCAGACCACCATACACTTACTACCTACAGCTCCAACTACCGTGAATGTAACACATCGTCCAGTAACTCAGGTGACCACAAGACTCCCTGTACCAAGAGCTCCTGCAAACCACCAGGTGGTTTATACAACTCTTCCTGCACCACCAGCTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGTCAATCCCCAAAATATTCTTCAGGAGAGAATACCATGGGTACCACCTGAATGCATTGAAAATCCTAAAAATTTAAATTTGGCAACAGACAAATGGAGTTTTGGTACCACTTTGTGGGAAATCTGCAGTGGAGGAGATAAACCTCTAAGTGCTCTGGATTCTCAAAGAAAGCTACAATTTTATGAAGATAGGCATCAGCTTCCTGCACCAAATTTGTTTACTCCAGAA	CTX	2767.24	HQ	4	Fusion	1,1,1,1	NM_001286514,NM_001286515,NM_018179,NM_181352	1093,1093,1094,1102	13,13,13,13	perfect,perfect,perfect,perfect	3277,3277,3280,3304		94,94,94,94	284,284,284,284	NM_004972,NM_004972,NM_004972,NM_004972	711,711,711,711	17,17,17,17	tuple,tuple,tuple,tuple	2132,2132,2132,2132	3399,3399,3399,3399	95,95,95,95	285,285,285,285	VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE,VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE,VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE,VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE	ATF7IP:NM_001286514[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_001286515[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_018179[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_181352[1,13]-JAK2:NM_004972[17,25]		geneB_transcripts=NM_004972	,,,	0,0,0,0
	StJude_Sample	JAK2	chr9	5077580	+	coding	ATF7IP	chr12	14644992	+	intron	>	9	8	128	199	0.000	0.000	1295	191	0.099	0.055	160	161	AAATTATGGAGTATGTGTCTGTGGAGACGAGAATATTCTGGTTCAGGAGTTTGTAAAATTTGGATCACTAGATACATATCTGAAAAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTATAGCCCTCACCTTACCAGTCAAGGAGCCAATGTGGTGGTTCTGCCAGCTGCTAAGTATGTCGATGCCAATTATGCATTTTGGCACTGCGGAAATGACCACAGGATGAATCCAGGAATCCACTGGATCCACTGTGTTACAGTTCGAGTGCCTCAAACAACCACATATGTTGTAAACAATGGACTAACCCTGGGATCAACAGTGGCACA	CTX	857.91	HQ	4	CLoss	0,0,0,3,3,3	NM_004972,NM_004972,NM_004972,,,	,,,,,	15,15,15,,,	,,,,,	1992,1992,1992,,,		,,,,,	,,,,,	NM_001286514,NM_018179,NM_181352,NM_001286514,NM_018179,NM_181352	1093,1094,1102,1093,1094,1102	14,14,14,,,	blat,blat,blat,blat,blat,blat	3278,3281,3305,3278,3281,3305	3810,3813,3837,3810,3813,3837	97,97,97,,,	,,,,,	IMEYVSVETRIFWFRSL*NLDH*IHI*KRIKIV*IYYGNLKLLNSWHGPCIFYSPHLTSQGANVVVLPAAKYVDANYAFWHCGNDHRMNPGIHWIHCVTVRVPQTTTYVVNNGLTLGSTVA,IMEYVSVETRIFWFRSL*NLDH*IHI*KRIKIV*IYYGNLKLLNSWHGPCIFYSPHLTSQGANVVVLPAAKYVDANYAFWHCGNDHRMNPGIHWIHCVTVRVPQTTTYVVNNGLTLGSTVA,IMEYVSVETRIFWFRSL*NLDH*IHI*KRIKIV*IYYGNLKLLNSWHGPCIFYSPHLTSQGANVVVLPAAKYVDANYAFWHCGNDHRMNPGIHWIHCVTVRVPQTTTYVVNNGLTLGSTVA,,,	JAK2:NM_004972[1,15]-ATF7IP:NM_001286514[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_018179[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_181352[14,15];;;		geneB_transcripts=NM_001286514,NM_018179,NM_181352	,,,,,	2,2,2,,,
	StJude_Sample	JAK2	chr9	5078418	+	coding	ATF7IP	chr12	14644072	+	intron	>	21	14	233	176	0.000	0.000	750	466	0.274	0.000	234	250	GTTTCAGGAGTTTGTAAAATTTGGATCACTAGATACATATCTGAAAAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGAAGAAAACACCCTTATTCATGGGAATGTATGTGCCAAAAATATTCTGCTTATCAGAGAAGAAGACAGGAAGACAGGAAATCCTCCTTTCATCAAACTTAGTGATCCTGGCATAGAAATTAGAACGGGGCCAAGTGGCAGAACAGCTTGCCCAGTAGCACGGACCTGCTGCAGAGCCTTCTCCTGTTCTGGACCACACTCAAAACTGGCAGCCTTTCAGGTCACTTGATAAATGGGCTGGAGTAACACACCCACATGAGGAATGTGTTGCCTCCAACATCCAAATAGGTCCACTAGACGTTGTGC	CTX	750.00	HQ	4	CLoss	,,	NM_004972,NM_004972,NM_004972	,,	,,	,,	2105,2105,2105		,,	,,	NM_001286514,NM_018179,NM_181352	,,	,,	,,	3278,3281,3305	3810,3813,3837	,,	,,	,,	;;	geneB_no_inframe_contig_found	geneB_transcripts=NM_001286514,NM_018179,NM_181352	,,	,,
	StJude_Sample	PAX5	chr9	37033982	-	coding	NA	chr14	57508194	+	intergenic	>	31	0	129	64	0.000	0.529	876	1	0.127	0.000	130	127	AAAAAAAAAAAAAAAAAAAAAAAAAGGCACAAAAAAGTGGAAACTTTTCCCTGTCCATTCCATCAAGTCCTGAAAAATCAAAATGGATTTAGAGAAAAATTATCCGACTCCTCGGACCAGCAGGACAGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACCGAACACC	CTX	412.24	HQ	1	CLoss	,,,,,,,,,,	NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	46,46,46,46,,46,46,46,46,,46		,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	;;;;;;;;;;	geneB_no_transcripts		,,,,,,,,,,	,,,,,,,,,,
	StJude_Sample	ERICH1-AS1	chr8	687825	+	5utr	ERICH1	chr8	624049	-	coding	>	7	1	208	184	0.000	0.000	348	22	0.159	0.034	209	207	CCGGCCGTGAAGACCGACCGTGCGCCGGGCTCGAGCGCGGTCTGAGCGCGCGGCGCCTGCGGCGGCGAACGGACGGACGGACCGCGGACGGACGTACTGACCCCAACCCGCGAGCCCCGGGAGCCGTCGGTCTGAGGAGGGGCCGCTTCGCCATGTCGCCCCGCACCTGCTGAGCCCGGAGCGTCCGAGGATGTCCGCGCTGAGGAAGATCAGGATCCTCATGACCAGCCAAAGAGAAGAAGAATTAGGAAGCATAAATCAAAGAAAAAATTTAAAAATCCCAATAATGTTCTTATAGAACAAGCAGAATTAGAGAAACAGCAGAGTCTGTTACAGGAGAAATCTCAGCGACAGCACACAGATGGCACCACAATAAGCAAAAATAAAAAA	ITX	353.16	HQ	0	NLoss	0									NM_207332	102		tuple	305	1332					geneA_no_transcript_IDs_found	geneB_transcripts=NM_207332		
	StJude_Sample	JAK2	chr9	5077582	+	coding	ATF7IP	chr12	14649165	+	coding	>	7	2	78	149	0.000	0.000	321	20	0.099	0.025	79	77	AAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGTGTTACAGTTCGAGTGCCTCAAACAACCACATATGTTGTAAACAATGGACTAACCCTGGGATCAACAGGACCTCAGCTCACAGTGCATCACCGACCACCACAAGTGCATACTGAGCCCCCACGCCCCGTGCACCCAGCACCCTTACCA	CTX	196.40	HQ	4	Fusion	0,0,0,3,3,3	NM_004972,NM_004972,NM_004972,,,	,,,,,	15,15,15,,,	,,,,,	1992,1992,1992,,,		,,,,,	,,,,,	NM_001286514,NM_018179,NM_181352,NM_001286514,NM_018179,NM_181352	1093,1094,1102,1093,1094,1102	14,14,14,,,	tuple,tuple,tuple,tuple,tuple,tuple	3278,3281,3305,3278,3281,3305	3810,3813,3837,3810,3813,3837	25,25,25,,,	,,,,,	KE*KLYKYIMET*SC*TVGMGHAFSSVTVRVPQTTTYVVNNGLTLGSTGPQLTVHHRPPQVHTEPPRPVHPAPLP,KE*KLYKYIMET*SC*TVGMGHAFSSVTVRVPQTTTYVVNNGLTLGSTGPQLTVHHRPPQVHTEPPRPVHPAPLP,KE*KLYKYIMET*SC*TVGMGHAFSSVTVRVPQTTTYVVNNGLTLGSTGPQLTVHHRPPQVHTEPPRPVHPAPLP,,,	JAK2:NM_004972[1,15]-ATF7IP:NM_001286514[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_018179[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_181352[14,15];;;		geneB_transcripts=NM_001286514,NM_018179,NM_181352	,,,,,	0,0,0,,,
	StJude_Sample	CD74	chr5	149785840	-	coding	CD74	chr5	149792314	-	coding	>	352	206	45	62	0.151	0.000	404	1316	0.000	0.173	60	60	GCCCTGCCCCAGGGGCCCATGCAGAATGCCACCAAGTATGGCAACATGACAGAGGACCAGAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAG	Internal_dup	183.44	HQ	2	ITD	0,0,0,0,0,0,0,0,0,2,2,2	NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,,,	,,,,,,,,,,,	4,4,4,4,4,4,4,4,4,,,	,,,,,,,,,,,	423,423,423,423,423,423,423,423,423,,,		,,,,,,,,,,,	,,,,,,,,,,,	NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355,NM_001025158,NM_001025159,NM_004355	0,0,0,0,0,0,0,0,0,0,0,0	1,1,1,1,1,1,1,1,1,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,,,,	483,483,483,891,891,891,699,699,699,483,891,699	20,20,20,20,20,20,20,20,20,,,	,,,,,,,,,,,	PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,,,	CD74:NM_001025158[1,4]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,4]-CD74:NM_001025158[1,6];CD74:NM_004355[1,4]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,4]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,4]-CD74:NM_001025159[1,9];CD74:NM_004355[1,4]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,4]-CD74:NM_004355[1,8];CD74:NM_001025159[1,4]-CD74:NM_004355[1,8];CD74:NM_004355[1,4]-CD74:NM_004355[1,8];;;		geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=1	,,,,,,,,,,,	2,2,2,2,2,2,2,2,2,,,
	StJude_Sample	ATF7IP	chr12	14634119	+	coding	JAK2	chr9	5081725	+	coding	>	1	2	67	80	0.000	0.000	81	126	0.176	0.010	67	68	GCTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGTCAATCCCCAAAATAATTATGAACTATTAACAGAAAATGACATGTTACCAAATATGAGGATAGGTGCCCTGGGGTTTTCTGGTGCATTTGAAGACC	CTX	163.88	HQ	4	Fusion	1,1,1,1	NM_001286514,NM_001286515,NM_018179,NM_181352	1093,1093,1094,1102	13,13,13,13	tuple,tuple,tuple,tuple	3277,3277,3280,3304		21,21,21,21	65,65,65,65	NM_004972,NM_004972,NM_004972,NM_004972	812,812,812,812	19,19,19,19	blat,blat,blat,blat	2435,2435,2435,2435	3399,3399,3399,3399	23,23,23,23	69,69,69,69	AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED,AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED,AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED,AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED	ATF7IP:NM_001286514[1,13]-JAK2:NM_004972[19,25];ATF7IP:NM_001286515[1,13]-JAK2:NM_004972[19,25];ATF7IP:NM_018179[1,13]-JAK2:NM_004972[19,25];ATF7IP:NM_181352[1,13]-JAK2:NM_004972[19,25]		geneB_transcripts=NM_004972	N,N,N,N	0,0,0,0
	StJude_Sample	FBXL13	chr7	102608469	-	coding	HLA-DPB1	chr6	33043815	+	coding	>	2	4	88	51	0.000	0.000	62	74	1.000	0.000	89	89	CTACCTCAGTTTAAAAGATGTGATAATATGTGGTCAAGTTAATCATGCCTGGATGTTGATGACACAACTAAACTCACTGTGGAATGCTCTCCATGATGGTTCTGCAGGTTTCTGCGGCCCCCCGGACAGTGGCTCTGAC	CTX	124.00	HQ	0	upTSS	0,0,0,2	NM_001111038,NM_001287150,NM_145032,	,,,	7,7,7,	,,,	591,591,591,		,,,	,,,	NM_002121,NM_002121,NM_002121,NM_002121	-1,-1,-1,-1	1,1,1,	tuple,tuple,tuple,tuple	,,,	777,777,777,777	30,30,30,	,,,	TSV*KM**YVVKLIMPGC**HN*THCGMLSMMVLQVSAAPRTVAL,TSV*KM**YVVKLIMPGC**HN*THCGMLSMMVLQVSAAPRTVAL,TSV*KM**YVVKLIMPGC**HN*THCGMLSMMVLQVSAAPRTVAL,	FBXL13:NM_001111038[1,7]-HLA-DPB1:NM_002121[1,6];FBXL13:NM_001287150[1,7]-HLA-DPB1:NM_002121[1,6];FBXL13:NM_145032[1,7]-HLA-DPB1:NM_002121[1,6];	geneB_breakpoint_not_mapped_to_CDS=NM_001242524;geneB_breakpoint_not_mapped_to_CDS=NM_001242525	geneB_transcripts=NM_001242524,NM_001242525,NM_002121;geneB_transcript_strand_disagree=NM_001242524;geneB_intronic=NM_001242524;geneB_transcript_strand_disagree=NM_001242525;geneB_intronic=NM_001242525;geneb_utr_codons=2	,,,	2,2,2,
	StJude_Sample	NDUFB2	chr7	140404764	+	3utr	KRIT1	chr7	91864921	-	coding	>	16	2	30	75	0.000	0.000	109	63	0.214	0.028	30	38	AGGTGTAGACTCAGCCTCACTCTGTACAAGAGCCAGGAAGCTTTATTCCGACCTTCTCCTCTTGAGCGGATAAAAACTAATGTCATAAATCCTGCATATGCTACTGAATCAGGA	ITX	109.00	HQ	0	NLoss	0,0,0,0,0,0,0,0,0,0	NM_004546,NM_004546,NM_004546,NM_004546,NM_004546,,,,,	,,,,,,,,,	3,3,3,3,3,,,,,	,,,,,,,,,	,,,,,,,,,		,,,,,,,,,	,,,,,,,,,	NM_001013406,NM_004912,NM_194454,NM_194455,NM_194456,NM_001013406,NM_004912,NM_194454,NM_194455,NM_194456	175,175,175,175,175,175,175,175,175,175	7,8,8,8,9,,,,,	blat,blat,blat,blat,blat,blat,blat,blat,blat,blat	525,525,525,525,525,525,525,525,525,525	2067,2211,2211,2211,2211,2067,2211,2211,2211,2211	13,13,13,13,13,,,,,	,,,,,,,,,	RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,,,,,	NDUFB2:NM_004546[1,3]-KRIT1:NM_001013406[7,17];NDUFB2:NM_004546[1,3]-KRIT1:NM_004912[8,19];NDUFB2:NM_004546[1,3]-KRIT1:NM_194454[8,19];NDUFB2:NM_004546[1,3]-KRIT1:NM_194455[8,19];NDUFB2:NM_004546[1,3]-KRIT1:NM_194456[9,20];;;;;		geneB_transcripts=NM_001013406,NM_004912,NM_194454,NM_194455,NM_194456	,,,,,,,,,	0,0,0,0,0,,,,,
	StJude_Sample	ZCCHC7	chr9	37126940	+	coding	PAX5	chr9	37020808	-	intron	>	5	2	155	71	0.492	0.101	156	48	0.051	0.000	156	142	ATGATTATAGAGGTCAGTTCAAGTGAAGAGGAAGAGAGCACCATTTCAGAAGGTGATAATGTGGAAAGCTGGATGCTACTGGGATGTGAAGTAGATGATAAAGATGATGATATCCTTCTCAACCTTGTGGGATGTGAAAACTCTGTTACTGAAGGACATGGAGGAGTGAATCAGCTTGGGGGGGTTTTTGTGAATGGACGGCCACTCCCGGATGTAGTCCGCCA	ITX	105.39	HQ	4	Fusion	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1	NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226	204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204	2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2	perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect	610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610		50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50	152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152	NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_016734,NM_016734,NM_016734,NM_016734	16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16	2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47	1074,1074,1074,1074,1089,1089,1089,1089,975,975,975,975,888,888,888,888,987,987,987,987,960,960,960,960,1047,1047,1047,1047,876,876,876,876,1176,1176,1176,1176	51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51	153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153	MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR	ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_016734[2,10];ZCCHC7:NM_001289120[1,2]-PAX5:NM_016734[2,10];ZCCHC7:NM_001289121[1,2]-PAX5:NM_016734[2,10];ZCCHC7:NM_032226[1,2]-PAX5:NM_016734[2,10]	geneB_no_inframe_contig_found	geneB_transcripts=NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734;geneb_utr_codons=13	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
	StJude_Sample	AKAP13	chr15	85924029	+	5utr	B2M	chr15	45007620	+	coding	>	2	7	190	85	0.016	0.000	95	26	0.158	0.005	191	191	CAGGGCCAGCGCGGAGCCCGAGCAGCCGCGGTGAAGCGCCTGTGCTCTGCCGAGACTGCCGTGCCCATTGCTCGCCTCGGTCGCCGCCGCTTTAGCCGCCTCCGGGGGAGCGGCCGCCTATTGTCTTTCTCCGCGGCGAAGGTGAAGAGTTGTCCCAGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTACTCCAAAGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTC	INS	95.00	HQ	1	NLoss	0,0,0	NM_006738,NM_007200,	,,	1,1,	,,	,,		,,	,,	NM_004048,NM_004048,NM_004048	23,23,23	2,2,	blat,blat,blat	68,68,68	360,360,360	64,64,	,,	RASAEPEQPR*SACALPRLPCPLLASVAAALAASGGAAAYCLSPRRR*RVVPARPAGEPREPHGTPKIQVYSRHPAENGKSNFLNCYVSGF,RASAEPEQPR*SACALPRLPCPLLASVAAALAASGGAAAYCLSPRRR*RVVPARPAGEPREPHGTPKIQVYSRHPAENGKSNFLNCYVSGF,	AKAP13:NM_006738[1,1]-B2M:NM_004048[2,4];AKAP13:NM_007200[1,1]-B2M:NM_004048[2,4];		geneB_transcripts=NM_004048	,,	1,1,
	StJude_Sample	PAX5	chr9	37035717	-	intergenic	ZCCHC7	chr9	37302188	+	coding	>	0	4	65	60	0.000	0.528	1	208	0.000	0.051	65	67	CTGGGGCTGGGCTGCGGAGGGAAAGAGTCGAGCACTCGGAGATGGCCAAAAATCAAATCTCGGGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACC	ITX	78.67	HQ	4	NLoss	0,0,0,0	,,,	,,,	,,,	,,,	,,,		,,,	,,,	NM_001289119,NM_001289120,NM_001289121,NM_032226	205,205,205,205	,,,	tuple,tuple,tuple,tuple	614,614,614,614	1632,1632,1632,1632	,,,	,,,	,,,	;;;	geneA_no_transcript_IDs_found	geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226	,,,	,,,
	StJude_Sample	STK24	chr13	99171500	-	coding	MIR17HG,MIR17,MIR18A,MIR19A,MIR20A,MIR19B1,MIR92A1	chr13	92001950	+	5utr	>	3	2	167	86	0.012	0.000	18	66	0.007	0.250	167	167	TGGAGAGGTGTTCAAAGGCATTGACAATCGGACTCAGAAAGTGGTTGCCATAAAGATCATTGATCTGGAAGAAGCTGAAGATGAGATAGAGGACATTCAACAAGAAATCACAGTGCTGAGTCAGTGTGACAGTCCATATGTAACCAAATATTATGGATCCTATCTGAAGTCATACACGTGGACCTAACTGCACCAGTAGCTTTTCTGAGAATACTTGCTGAAAAGGAAGTTTTCTGGAATGGGTAAGTGTATT	ITX	65.23	HQ	0	CLoss	,,	NM_001032296,NM_001286649,NM_003576	,,	,,	,,	270,270,306		,,	,,	,,	,,	,,	,,	,,	,,	,,	,,	,,	;;	geneB_no_transcripts		,,	,,
	StJude_Sample	JAK2	chr9	5077581	+	coding	ATF7IP	chr12	14644504	+	intron	>	3	4	75	138	0.000	0.738	224	102	0.099	0.026	75	74	AGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGAGCAAAAAGTGATCAAGGTCTCTCTGAATAAGATTATGACACAAAGCTGGAGAGTTGATACACCCCTGAGTAGCCCTCACCTTACCAGTCAAGGAGCCAATGTGGTGGTTCTGCCAGCTGCTAAGTATGTCGATGCC	CTX	50.85	HQ	4	CLoss	,,	NM_004972,NM_004972,NM_004972	,,	,,	,,	1992,1992,1992		,,	,,	NM_001286514,NM_018179,NM_181352	,,	,,	,,	3278,3281,3305	3810,3813,3837	,,	,,	,,	;;	geneB_no_inframe_contig_found	geneB_transcripts=NM_001286514,NM_018179,NM_181352	,,	,,
	StJude_Sample	CD74	chr5	149786809	-	coding	CD74	chr5	149792317	-	coding	>	6	440	42	48	0.000	0.000	134	1360	0.001	0.517	43	68	ATCCTGGTGACTCTGCTCCTCGCTGGCCAGGCCACCACCGCCACATACCGGGGCCCCAGGGCGCCGGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGC	Internal_dup	49.82	HQ	2	ITD	1,1,1,1,1,1,1,1,1	NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355	69,69,69,69,69,69,69,69,69	2,2,2,2,2,2,2,2,2	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	204,204,204,204,204,204,204,204,204		13,13,13,13,13,13,13,13,13	41,41,41,41,41,41,41,41,41	NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355	-1,-1,-1,-1,-1,-1,-1,-1,-1	1,1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,	483,483,483,891,891,891,699,699,699	24,24,24,24,24,24,24,24,24	72,72,72,72,72,72,72,72,72	ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK	CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8]		geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=2	TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ	0,0,0,0,0,0,0,0,0
	StJude_Sample	SLC35E1	chr19	16683619	+	intergenic	BRD4	chr19	15383946	-	5utr	>	1	3	49	174	0.000	0.000	7	91	0.150	0.041	49	47	GCTAACTAGATTCCTGATTCCTGATGGCTGGCGGCGGCTGACACCAAAGAGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCAAATGTCTACAACACAGGCCCAGGCCCAACCCCAGCCAGCCAACGCAGCCAGCACCAACCCCCCG	ITX	46.43	HQ	2	upTSS	2,2	,	,	,	,	,		,	,	NM_014299,NM_058243	-11,-11	,	tuple,tuple	,	2169,4089	,	,	,	;	geneA_no_transcript_IDs_found	geneB_transcripts=NM_014299,NM_058243;geneb_utr_codons=12	,	,
	StJude_Sample	CD74	chr5	149786833	+	coding	CD74	chr5	149792314	-	coding	?	2	800	77	90	0.000	0.072	172	8110	0.000	0.173	122	127	TTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCCGTGCAGCTCGGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCTGCTGCTGGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGTCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACT	Internal_inv	40.55	HQ	3	Fusion																				unhandled orientation ?			
	StJude_Sample	CD74	chr5	149786859	+	coding	CD74	chr5	149792314	-	coding	?	2	499	69	85	0.000	0.034	159	6042	0.000	0.173	103	104	CTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCTGCTGGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACCAGGATGGAAAAGCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAG	Internal_inv	30.21	HQ	3	Fusion																				unhandled orientation ?			
	StJude_Sample	CCND3	chr6	42016238	-	5utr	IGH	chr14	106322323	-	5utr	>	1	6	189	68	0.000	0.029	29	170	0.011	0.028	189	188	AAACACTTCGCCACTGCAGGGGTGGAGACTGGCTCTGTTCGGATGCCGGCCGGGGGGGAGAGGTGCAATCCTCTCCTCGCGGCTGGTGGTTGCGACCACCCCCACTCCCCAAAGGCAGGCTCCGGAGGCGGCGGGACAGAGCGCCTGCGACCCCAGTCGGTGCTCCGGGGAGGTCACCTGACGAGGAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGC	CTX	28.33	HQ	4	other	,,	NM_001136017,NM_001136126,NM_001287434	,,	,,	,,	,,		,,	,,	,,	,,	,,	,,	,,	,,	,,	,,	,,	;;	geneB_no_transcripts		,,	,,
	StJude_Sample	CD74	chr5	149786797	+	coding	CD74	chr5	149792310	-	coding	?	10	389	62	98	0.127	0.000	348	4175	0.000	0.173	118	118	CCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGTGCATCTGCAGGTTCTCCAGCTGCAGGTTCTGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCTGCTGCTGGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACTGCCCATGCTGG	Internal_inv	18.23	HQ	3	Fusion																				unhandled orientation ?			
	StJude_Sample	GLTSCR2	chr19	48249040	+	coding	DHX34	chr19	47885236	+	coding	>	36	3	48	94	0.534	0.000	28	67	0.003	0.105	49	49	GAGGTTGACCAGTTCCTGGAAGACGTGCGGCTACAGGAGCGCACGAGCGGGGGCTGAGGAAGCTGCCCTCGAAACCCTCCAGAAGACATCTGTCCTGCAGAGGCCCTACCACTGCGAGGCCTGCGGGAAGGACTTCCTCTTTA	INS	11.49	HQ	0	Fusion	0,0	NM_015710,	,	1,	,	224,		,	,	NM_014681,NM_014681	1100,1100	17,	tuple,tuple	3299,3299	3432,3432	16,	,	RLTSSWKTCGYRSARAGAEEAALETLQKTSVLQRPYHCEACGKDFLF,	GLTSCR2:NM_015710[1,1]-DHX34:NM_014681[17,17];		geneB_transcripts=NM_014681	,	1,
	StJude_Sample	ATF7IP	chr12	14634119	+	coding	JAK2	chr9	5080301	+	coding	>	0	3	66	80	0.000	0.000	0	131	0.176	0.011	66	66	CTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGTCAATCCCCAAAATAACAAATGGAGTTTTGGTACCACTTTGTGGGAAATCTGCAGTGGAGGAGATAAACCTCTAAGTGCTCTGGATTCTCAAAGAA	CTX	2.98	HQ	4	Fusion	1,1,1,1	NM_001286514,NM_001286515,NM_018179,NM_181352	1093,1093,1094,1102	13,13,13,13	tuple,tuple,tuple,tuple	3277,3277,3280,3304		20,20,20,20	64,64,64,64	NM_004972,NM_004972,NM_004972,NM_004972	735,735,735,735	17,17,17,17	blat,blat,blat,blat	2204,2204,2204,2204	3399,3399,3399,3399	22,22,22,22	68,68,68,68	QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR,QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR,QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR,QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR	ATF7IP:NM_001286514[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_001286515[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_018179[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_181352[1,13]-JAK2:NM_004972[17,25]		geneB_transcripts=NM_004972	N,N,N,N	2,2,2,2
	StJude_Sample	MNT	chr17	2303934	-	coding	SEPT9	chr17	75478225	+	coding	>	1	2	138	58	0.000	0.000	47	52	0.077	0.033	139	139	CTGACCTGTGCCCGGCTCGCGGGCCGCCGCCTCGGCCCCGGCGCGCCCCCGGCAGCTCTCGGCGCGATGAGCATAGAGACGCTACTGGAGGCGGCCCGCTTCCTGGAATGGCAAGCGCAGCAACAACAGAGAGCACGTGCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGAGATGCCG	ITX	72.03	LQ	2	Fusion	1,1,1,1,1,1,1,1,1,1,1	NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310	25,25,25,25,25,25,25,25,25,25,25	1,1,1,1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	73,73,73,73,73,73,73,73,73,73,73		45,45,45,45,45,45,45,45,45,45,45	137,137,137,137,137,137,137,137,137,137,137	NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640	241,77,234,77,129,-10,222,17,-10,-10,223	4,4,3,3,2,2,3,2,2,2,3	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	722,230,701,230,386,,665,50,,,668	1761,1269,1740,1269,1425,1008,1704,1089,1008,1008,1707	46,46,46,46,46,49,46,46,49,49,46	138,138,138,138,138,147,138,138,147,147,138	LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA	MNT:NM_020310[1,1]-SEPT9:NM_001113491[4,12];MNT:NM_020310[1,1]-SEPT9:NM_001113492[4,12];MNT:NM_020310[1,1]-SEPT9:NM_001113493[3,11];MNT:NM_020310[1,1]-SEPT9:NM_001113494[3,11];MNT:NM_020310[1,1]-SEPT9:NM_001113495[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001113496[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001293695[3,11];MNT:NM_020310[1,1]-SEPT9:NM_001293696[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001293697[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001293698[2,10];MNT:NM_020310[1,1]-SEPT9:NM_006640[3,11]		geneB_transcripts=NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640;geneb_utr_codons=11	,,,,,ATE,,,ATE,ATE,	0,0,0,0,0,0,0,0,0,0,0
	StJude_Sample	HIPK2	chr7	139415730	-	coding	TCF12	chr15	57212088	+	5utr	>	2	0	138	136	0.000	0.000	55	0	0.080	0.019	139	137	CGCTGACCTCAAACCAGAAAACATCATGCTGGTGGATCCATCTAGACAACCATACAGAGTCAAGGTCATCGACTTTGGTTCAGCCAGCCACGTGTCCAAGGCTGTGTGCTCCACCTACTTGCAGTCCAGATATTACAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGAC	CTX	58.67	LQ	2	upTSS	0,0,0,0,0,0,0,0,2,2,2,2	NM_001113239,NM_022740,NM_001113239,NM_022740,NM_001113239,NM_022740,NM_001113239,NM_022740,,,,	369,369,369,369,369,369,369,369,,,,	2,2,2,2,2,2,2,2,,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,,	1103,1103,1103,1103,1103,1103,1103,1103,,,,		45,45,45,45,45,45,45,45,,,,	138,138,138,138,138,138,138,138,,,,	NM_003205,NM_003205,NM_207036,NM_207036,NM_207037,NM_207037,NM_207038,NM_207038,NM_003205,NM_207036,NM_207037,NM_207038	-7,-7,-3,-3,-7,-7,-3,-3,-7,-3,-7,-3	2,2,2,2,2,2,2,2,,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,,,,	2049,2049,2121,2121,2121,2121,2049,2049,2049,2121,2121,2049	48,48,52,52,48,48,52,52,,,,	145,145,157,157,145,145,157,157,,,,	ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,,,,	HIPK2:NM_001113239[1,2]-TCF12:NM_003205[2,20];HIPK2:NM_022740[1,2]-TCF12:NM_003205[2,20];HIPK2:NM_001113239[1,2]-TCF12:NM_207036[2,21];HIPK2:NM_022740[1,2]-TCF12:NM_207036[2,21];HIPK2:NM_001113239[1,2]-TCF12:NM_207037[2,21];HIPK2:NM_022740[1,2]-TCF12:NM_207037[2,21];HIPK2:NM_001113239[1,2]-TCF12:NM_207038[2,20];HIPK2:NM_022740[1,2]-TCF12:NM_207038[2,20];;;;		geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038;geneb_utr_codons=8;not_inframe_due_to_intermediate_stop_codon;geneb_utr_codons=4	TC,TC,TC*KWP,TC*KWP,TC,TC,TC*KWP,TC*KWP,,,,	1,1,1,1,1,1,1,1,,,,
	StJude_Sample	GUSBP4	chr6	58285306	-	3utr	HLA-DPB1	chr6	33043816	+	coding	>	1	5	85	48	0.656	0.020	48	176	0.111	0.026	97	97	GTTCGGGGTTCGGTAAAAAAGCTCACACATTTGACTTGGAAGCAATGTTTGAACAAACTCAAAGAACAGCTGTGGAAAGAAGTCACAAAACACTGGCTCCATGATGGTTCTGCAGGTTTCTGCGGCCCCCCGGACAGTGGCTCT	ITX	52.26	LQ	0	upTSS	2									NM_002121	0		tuple		777					geneB_breakpoint_not_mapped_to_CDS=NM_001242524;geneB_breakpoint_not_mapped_to_CDS=NM_001242525;geneA_no_transcript_IDs_found	geneB_transcripts=NM_001242524,NM_001242525,NM_002121;geneB_transcript_strand_disagree=NM_001242524;geneB_intronic=NM_001242524;geneB_transcript_strand_disagree=NM_001242525;geneB_intronic=NM_001242525;geneb_utr_codons=1		
	StJude_Sample	TRAK2	chr2	202260037	-	coding	RFPL1S	chr22	29819177	-	intergenic	>	1	3	130	53	0.000	0.500	53	50	0.008	0.224	142	143	TAAAGAACTTCGTGAAACAAATGCTCAGATGTCCAGAATGACTGAAGAATTGTCAGGGAAGAGTGATGAGCTGATTCGATACCAAGAAGAGCTTTCCTCTCTTTTGTCACAGATTGTAGACCTTCAGCATAAACTTAAAGAAAAGCCTGGCTACAGATAAGGGACCAAAATGACTGACTCAAAATATTTCACCAC	CTX	50.05	LQ	0	CLoss		NM_015049				900														geneB_no_transcripts			
	StJude_Sample	LOC440311	chr15	95398934	+	5utr	DHX34	chr19	47885236	+	coding	>	0	3	52	94	0.495	0.000	1	67	0.000	0.105	55	49	GAGGTTGACCAGTTCCTGGAAGACGTGCGGCTACAGGAGCGCACGAGCGGGGGCTGAGGAAGCTGCCCTCGAAACCCTCCAGAAGACATCTGTCCTGCAGAGGCCCTACCACTGCGAGGCCTGCGGGAAGGACTTCCTCTTTA	CTX	33.83	LQ	0	NLoss	0									NM_014681	1100		tuple	3299	3432					geneA_no_transcript_IDs_found	geneB_transcripts=NM_014681		
	StJude_Sample	GPSM1	chr9	139235450	+	coding	SEPT9	chr17	75478221	+	coding	>	1	0	190	55	0.000	0.000	49	0	0.040	0.000	191	185	GTGTCCATGGGGCGCCCAGCGCAGGCCCTGACCTTCGCCAAGAAGCACCTGCAGATCTCCCAGGAGATCGGGGACCGCCATGGGGAGCTCACGGCCCGCATGAACGTGGCGCAGCTGCAGCTGGTGCTCGGCCGCCTGACCAGCCCGGCAGCCTCAGAGAAGCCTGACCTGGCCGGCTATGAGGCCCAGGCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGA	CTX	28.36	LQ	2	Fusion	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1	NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597	403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403	9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9	perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,tuple,tuple,perfect,perfect,perfect,perfect,tuple,tuple,tuple,tuple,perfect,perfect	,,,,,,,,,,,,,,,,,,,,,		62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62	188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188	NM_001113491,NM_001113491,NM_001113492,NM_001113492,NM_001113493,NM_001113493,NM_001113494,NM_001113494,NM_001113495,NM_001113495,NM_001113496,NM_001113496,NM_001293695,NM_001293695,NM_001293696,NM_001293696,NM_001293697,NM_001293697,NM_001293698,NM_001293698,NM_006640,NM_006640	241,241,77,77,234,234,77,77,129,129,-10,-10,222,222,17,17,-10,-10,-10,-10,223,223	4,4,4,4,3,3,3,3,2,2,2,2,3,3,2,2,2,2,2,2,3,3	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	722,722,230,230,701,701,230,230,386,386,,,665,665,50,50,,,,,668,668	1761,1761,1269,1269,1740,1740,1269,1269,1425,1425,1008,1008,1704,1704,1089,1089,1008,1008,1008,1008,1707,1707	63,63,63,63,63,63,63,63,63,63,66,66,63,63,63,63,66,66,66,66,63,63	189,189,189,189,189,189,189,189,189,189,198,198,189,189,189,189,198,198,198,198,189,189	VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR	GPSM1:NM_001145638[1,9]-SEPT9:NM_001113491[4,12];GPSM1:NM_015597[1,9]-SEPT9:NM_001113491[4,12];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113492[4,12];GPSM1:NM_015597[1,9]-SEPT9:NM_001113492[4,12];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113493[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_001113493[3,11];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113494[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_001113494[3,11];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113495[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001113495[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113496[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001113496[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293695[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_001293695[3,11];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293696[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001293696[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293697[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001293697[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293698[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001293698[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_006640[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_006640[3,11]		geneB_transcripts=NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640;geneb_utr_codons=11	,,,,,,,,,,ATE,ATE,,,,,ATE,ATE,ATE,ATE,,	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
	StJude_Sample	BMP2K	chr4	79800045	+	coding	BMPR1B	chr4	96025559	+	coding	>	0	1	54	160	0.000	0.000	1	53	0.000	0.036	54	54	CTAAGTTAACAGAAGAGGAACTATTGGACAGAGAATTTGACCTTCTAAGATCAACAAACTTCCTTGATAACATGCTTTTGCGAAGTGCAGGAAAATTAAATGTGGGCACCAAGAAAGAGGATGGTGAGAGTACAGCCCCCACCCCCCGTCCAAAGGTCTTGCGTTGTAAATGCCACCACCATTGTCCAGAAGACTCAGTCAACAATATTTGCAGC	DEL	26.80	LQ	2	Fusion	1,1,1,1,1,1,1,1	NM_017593,NM_198892,NM_017593,NM_198892,NM_017593,NM_198892,NM_017593,NM_198892	651,651,651,651,651,651,651,651	14,14,14,14,14,14,14,14	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	1951,1951,1951,1951,1951,1951,1951,1951		16,16,16,16,16,16,16,16	52,52,52,52,52,52,52,52	NM_001203,NM_001203,NM_001256792,NM_001256792,NM_001256793,NM_001256793,NM_001256794,NM_001256794	-5,-5,-5,-5,25,25,-5,-5	4,4,2,2,2,2,2,2	tuple,tuple,tuple,tuple,blat,blat,tuple,tuple	,,,,74,74,,	1509,1509,1509,1509,1599,1599,1509,1509	20,20,20,20,18,18,20,20	62,62,62,62,56,56,62,62	KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS	BMP2K:NM_017593[1,14]-BMPR1B:NM_001203[4,13];BMP2K:NM_198892[1,14]-BMPR1B:NM_001203[4,13];BMP2K:NM_017593[1,14]-BMPR1B:NM_001256792[2,11];BMP2K:NM_198892[1,14]-BMPR1B:NM_001256792[2,11];BMP2K:NM_017593[1,14]-BMPR1B:NM_001256793[2,11];BMP2K:NM_198892[1,14]-BMPR1B:NM_001256793[2,11];BMP2K:NM_017593[1,14]-BMPR1B:NM_001256794[2,11];BMP2K:NM_198892[1,14]-BMPR1B:NM_001256794[2,11]		geneB_transcripts=NM_001203,NM_001256792,NM_001256793,NM_001256794;geneb_utr_codons=6	TNF,TNF,TNF,TNF,T,T,TNF,TNF	2,2,2,2,2,2,2,2
	StJude_Sample	FUS	chr16	31191548	+	coding	CXCR4	chr2	136873483	-	coding	>	4	4	57	60	0.000	0.000	28	153	0.004	0.025	57	56	GTTGGAACTTCGTTGCTTGCTTGCCTGTGCGCGCGTGCGCGGACATGGCCTCAAACGATATACACTTCAGATAACTACACCGAGGAAATGGGCTCAGGGGACTATGACTCCATGAA	CTX	21.52	LQ	3	Fusion	0,0,0,0,0,0,0,0	NM_001170634,NM_001170937,NM_004960,NM_001170634,NM_001170937,NM_004960,,	,,,,,,,	1,1,1,1,1,1,,	,,,,,,,	13,13,13,13,13,13,,		,,,,,,,	,,,,,,,	NM_001008540,NM_001008540,NM_001008540,NM_003467,NM_003467,NM_003467,NM_001008540,NM_003467	9,9,9,6,6,6,9,6	1,1,1,2,2,2,,	blat,blat,blat,tuple,tuple,tuple,blat,tuple	27,27,27,16,16,16,27,16	1071,1071,1071,1059,1059,1059,1071,1059	19,19,19,19,19,19,,	,,,,,,,	VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,,	FUS:NM_001170634[1,1]-CXCR4:NM_001008540[1,1];FUS:NM_001170937[1,1]-CXCR4:NM_001008540[1,1];FUS:NM_004960[1,1]-CXCR4:NM_001008540[1,1];FUS:NM_001170634[1,1]-CXCR4:NM_003467[2,2];FUS:NM_001170937[1,1]-CXCR4:NM_003467[2,2];FUS:NM_004960[1,1]-CXCR4:NM_003467[2,2];;		geneB_transcripts=NM_001008540,NM_003467	,,,,,,,	0,0,0,0,0,0,,
	StJude_Sample	TTYH3	chr7	2671914	+	coding	SKI	chr1	2234413	+	coding	>	4	0	81	47	0.000	0.000	74	0	0.077	0.000	82	77	TGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCCCTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAGGTCTCCTCTGAGCCTCCGGCCTCCATAAGACCCAAAACAGATG	CTX	17.19	LQ	2	Fusion	1	NM_025250	42	1	tuple	123		25	79	NM_003036	324	2	tuple	970	2187	26	80	HRLPHFDLSWEAPSSQFRPEDTDYQQVSSEPPASIRPKTD	TTYH3:NM_025250[1,1]-SKI:NM_003036[2,7]		geneB_transcripts=NM_003036		2
	StJude_Sample	FNBP1	chr9	132805231	-	coding	CXCR4	chr2	136873483	-	coding	>	0	7	54	82	0.000	0.000	0	120	0.030	0.025	54	54	CGCGGAGCGCCCCTTCGCGTCCCCTGCACCATGAGCTGGGGCACCGAGCTCTGGATATACACTTAAGATAACTACACCGAGGAAATGGGCTCAGGGGACTATGACTCCATGAAGGAACCCTGTTTCCGTGAAGAAA	CTX	16.88	LQ	3	Fusion	0,0,3,3	NM_015033,NM_015033,,	,,,	1,1,,	,,,	24,24,,		,,,	,,,	NM_001008540,NM_003467,NM_001008540,NM_003467	9,6,9,6	1,2,,	blat,blat,blat,blat	27,16,27,16	1071,1059,1071,1059	21,21,,	,,,	RGAPLRVPCTMSWGTELWIYT*DNYTEEMGSGDYDSMKEPCFREE,RGAPLRVPCTMSWGTELWIYT*DNYTEEMGSGDYDSMKEPCFREE,,	FNBP1:NM_015033[1,1]-CXCR4:NM_001008540[1,1];FNBP1:NM_015033[1,1]-CXCR4:NM_003467[2,2];;		geneB_transcripts=NM_001008540,NM_003467	,,,	0,0,,
	StJude_Sample	TFEB	chr6	41703086	-	5utr	CCND3	chr6	41908322	-	coding	>	2	3	95	61	0.000	0.076	91	40	0.027	0.012	96	96	GCGGGCACAGCTTGCGGGCCAGGCACCCGAACTTGCGACAAGTTGCCGGAGCCGCGGGGCGCGGGCGGCGGACAGATTGACCTTCAGAGCGAGGTATGTGAGGAGCAGCGCTGTGAGGAGGAAGTCTTCCCCCTGGCCATGAACTACCTGGATCGATA	INS	13.72	LQ	3	NLoss	0,0,0,0,0,0,0,0,0,0,0,0	NM_001167827,NM_001271943,NM_001271944,NM_001167827,NM_001271943,NM_001271944,NM_001167827,NM_001271943,NM_001271944,,,	,,,,,,,,,,,	1,1,1,1,1,1,1,1,1,,,	,,,,,,,,,,,	20,,,20,,,20,,,,,		,,,,,,,,,,,	,,,,,,,,,,,	NM_001136017,NM_001136017,NM_001136017,NM_001287427,NM_001287427,NM_001287427,NM_001760,NM_001760,NM_001760,NM_001136017,NM_001287427,NM_001760	-14,-14,-14,17,17,17,67,67,67,-14,17,67	2,2,2,2,2,2,2,2,2,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,50,50,50,200,200,200,,50,200	636,636,636,729,729,729,879,879,879,636,729,879	34,34,34,31,31,31,31,31,31,,,	,,,,,,,,,,,	AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,,,	TFEB:NM_001167827[1,1]-CCND3:NM_001136017[2,5];TFEB:NM_001271943[1,1]-CCND3:NM_001136017[2,5];TFEB:NM_001271944[1,1]-CCND3:NM_001136017[2,5];TFEB:NM_001167827[1,1]-CCND3:NM_001287427[2,5];TFEB:NM_001271943[1,1]-CCND3:NM_001287427[2,5];TFEB:NM_001271944[1,1]-CCND3:NM_001287427[2,5];TFEB:NM_001167827[1,1]-CCND3:NM_001760[2,5];TFEB:NM_001271943[1,1]-CCND3:NM_001760[2,5];TFEB:NM_001271944[1,1]-CCND3:NM_001760[2,5];;;	geneB_breakpoint_not_mapped_to_CDS=NM_001136125;geneB_breakpoint_not_mapped_to_CDS=NM_001136126;geneB_breakpoint_not_mapped_to_CDS=NM_001287434	geneB_transcripts=NM_001136017,NM_001136125,NM_001136126,NM_001287427,NM_001287434,NM_001760;geneb_utr_codons=13;geneB_intronic=NM_001136125;geneB_intronic=NM_001136126;geneB_intronic=NM_001287434	,,,,,,,,,,,	0,0,0,0,0,0,0,0,0,,,
	StJude_Sample	CUX1	chr7	101882864	+	coding	GOLGA4	chr3	37396590	+	coding	>	0	2	52	94	0.480	0.000	1	66	0.000	0.045	52	50	CCCAGCTCAACCTGAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGACCATGGCAAAAGTTATAACCACCGTACTGAAGTTCCCTGATGATCAGACTCAGAAAATTTTGGAAAGAGAAGATGCTCGGCTGATGTTTAC	CTX	11.42	LQ	3	Fusion	0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3	NM_001202543,NM_001202544,NM_001202545,NM_001202546,NM_001913,NM_181500,NM_181552,NM_001202543,NM_001202544,NM_001202545,NM_001202546,NM_001913,NM_181500,NM_181552,,	,,,,,,,,,,,,,,,	23,13,13,13,14,14,23,23,13,13,13,14,14,23,,	,,,,,,,,,,,,,,,	3920,,,,,,3887,3920,,,,,,3887,,		,,,,,,,,,,,,,,,	,,,,,,,,,,,,,,,	NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_002078,NM_002078,NM_002078,NM_002078,NM_002078,NM_002078,NM_002078,NM_001172713,NM_002078	2208,2208,2208,2208,2208,2208,2208,2193,2193,2193,2193,2193,2193,2193,2208,2193	22,22,22,22,22,22,22,22,22,22,22,22,22,22,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	6622,6622,6622,6622,6622,6622,6622,6577,6577,6577,6577,6577,6577,6577,6622,6577	6732,6732,6732,6732,6732,6732,6732,6693,6693,6693,6693,6693,6693,6693,6732,6693	17,17,17,17,17,17,17,17,17,17,17,17,17,17,,	,,,,,,,,,,,,,,,	PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,,	CUX1:NM_001202543[1,23]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202544[1,13]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202545[1,13]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202546[1,13]-GOLGA4:NM_001172713[22,23];CUX1:NM_001913[1,14]-GOLGA4:NM_001172713[22,23];CUX1:NM_181500[1,14]-GOLGA4:NM_001172713[22,23];CUX1:NM_181552[1,23]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202543[1,23]-GOLGA4:NM_002078[22,24];CUX1:NM_001202544[1,13]-GOLGA4:NM_002078[22,24];CUX1:NM_001202545[1,13]-GOLGA4:NM_002078[22,24];CUX1:NM_001202546[1,13]-GOLGA4:NM_002078[22,24];CUX1:NM_001913[1,14]-GOLGA4:NM_002078[22,24];CUX1:NM_181500[1,14]-GOLGA4:NM_002078[22,24];CUX1:NM_181552[1,23]-GOLGA4:NM_002078[22,24];;		geneB_transcripts=NM_001172713,NM_002078	,,,,,,,,,,,,,,,	1,1,1,1,1,1,1,1,1,1,1,1,1,1,,
	StJude_Sample	ERICH1-AS1	chr8	687825	+	5utr	HMGB1	chr13	31037833	-	5utr	>	3	1	77	61	0.000	0.947	91	7	0.159	0.023	78	76	CTGAGGAGGGGCCGCTTCGCCATGTCGCCCCGCACCTGCTGAGCCCGGAGCGTCCGAGGATGTCCGCGCTGAGGAAGAAAAATAACTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCA	CTX	11.20	LQ	0	upTSS	2									NM_002128	-4		tuple		648					geneA_no_transcript_IDs_found	geneB_transcripts=NM_002128;geneb_utr_codons=5		
	StJude_Sample	AKAP8	chr19	15490523	-	coding	TCF12	chr15	57212088	+	5utr	>	2	0	84	136	0.000	0.000	64	0	0.019	0.019	85	82	CGCTGAACGCATGCGTGCTGTGGTCGCCTAGTAAACGGGGCTGCTGGTGGGCCGCGTCGAAGACATGGACCAGGGCTACGGAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGAC	CTX	9.04	LQ	2	upTSS	0,0,0,0,2,2,2,2	NM_005858,NM_005858,NM_005858,NM_005858,,,,	,,,,,,,	1,1,1,1,,,,	,,,,,,,	19,19,19,19,,,,		,,,,,,,	,,,,,,,	NM_003205,NM_207036,NM_207037,NM_207038,NM_003205,NM_207036,NM_207037,NM_207038	-7,-3,-7,-3,-7,-3,-7,-3	2,2,2,2,,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,	2049,2121,2121,2049,2049,2121,2121,2049	30,34,30,34,,,,	,,,,,,,	R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,,,,	AKAP8:NM_005858[1,1]-TCF12:NM_003205[2,20];AKAP8:NM_005858[1,1]-TCF12:NM_207036[2,21];AKAP8:NM_005858[1,1]-TCF12:NM_207037[2,21];AKAP8:NM_005858[1,1]-TCF12:NM_207038[2,20];;;;		geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038;geneb_utr_codons=8;geneb_utr_codons=4	,,,,,,,	0,0,0,0,,,,
	StJude_Sample	ECHDC3	chr10	11797608	+	coding	ARHGAP24	chr4	86491673	+	5utr	>	2	3	90	46	0.000	0.000	54	70	0.125	0.000	91	88	ACAAGTCCTCTTTTGCCACTCCTGGGGTGAACGTCGGGCTCTTCTGTTCTACCCCTGGGGTTGCCTTGGCAAGAGCAGTGCCTAGAAAGGAAAGTCCATCAGCTTGATAATGGAGGAGAACAATGACTCCACG	CTX	7.31	LQ	0	CLoss	0,0	NM_024693,	,	4,	,	,		,	,	NM_001025616,NM_001025616	-6,-6	2,	tuple,tuple	,	2247,2247	32,	,	QVLFCHSWGERRALLFYPWGCLGKSSA*KGKSISLIMEENNDST,	ECHDC3:NM_024693[1,4]-ARHGAP24:NM_001025616[2,10];		geneB_transcripts=NM_001025616;geneb_utr_codons=7	,	1,
	StJude_Sample	CASD1	chr7	94164835	+	coding	SND1	chr7	127731889	+	coding	>	1	0	95	49	0.000	0.000	50	1	0.022	0.000	96	96	ATGTTAAGATGTTCAGTGTTTCCAAATTAATTGCTCAAGAAACCATCATGGAATCTTTGGATGGCTTACATCTTCCTGAATCGAGCAGAGAAACTATCACAGAATACCTGAATACCCAAGAGTCAGCCAAGAGCGCCAGGCTGAA	DEL	6.39	LQ	2	Fusion	1	NM_022900	282	8	perfect	843		30	94	NM_014390	875	23	blat	2623	2733	31	95	VKMFSVSKLIAQETIMESLDGLHLPESSRETITEYLNTQESAKSARL	CASD1:NM_022900[1,8]-SND1:NM_014390[23,24]		geneB_transcripts=NM_014390		2
	StJude_Sample	NIN	chr14	51288594	-	coding	KLC1	chr14	104120900	+	coding	>	0	1	171	103	0.006	0.000	0	47	0.015	0.018	171	171	GGAGCAGGACCAGCATGAGGCCCGACTCAAGGAGCTGTTTGACAGTTTTGACACGACGGGCACAGGGTCCCTGGGGCAGGAGGAACTCACCGACCTTTGCCACATGTTGAGCTTGGAGGAGGTGGCCCCAGTGCTGCAGCAGACATTACTTCAGGACAACCTCTTGGGCAGGAATGTATGACAACATGTCCACAATGGTGTACATAAAGGAAGACAAGTTGGAGAAGCTTACACAGGATGAAATTATTTCTAAGACAAAGCAAGTAATTCAGGG	ITX	5.50	LQ	3	upTSS	0,0,0,0,0,0,0,0,0,0,0,0,2,2,2	NM_016350,NM_020921,NM_182944,NM_182946,NM_016350,NM_020921,NM_182944,NM_182946,NM_016350,NM_020921,NM_182944,NM_182946,,,	,,,,,,,,,,,,,,	3,3,3,3,3,3,3,3,3,3,3,3,,,	,,,,,,,,,,,,,,	181,,,,181,,,,181,,,,,,		,,,,,,,,,,,,,,	,,,,,,,,,,,,,,	NM_001130107,NM_001130107,NM_001130107,NM_001130107,NM_005552,NM_005552,NM_005552,NM_005552,NM_182923,NM_182923,NM_182923,NM_182923,NM_001130107,NM_005552,NM_182923	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0	2,2,2,2,2,2,2,2,2,2,2,2,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,,,,,,,	1857,1857,1857,1857,1683,1683,1683,1683,1722,1722,1722,1722,1857,1683,1722	57,57,57,57,57,57,57,57,57,57,57,57,,,	,,,,,,,,,,,,,,	SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,,,	NIN:NM_016350[1,3]-KLC1:NM_001130107[2,16];NIN:NM_020921[1,3]-KLC1:NM_001130107[2,16];NIN:NM_182944[1,3]-KLC1:NM_001130107[2,16];NIN:NM_182946[1,3]-KLC1:NM_001130107[2,16];NIN:NM_016350[1,3]-KLC1:NM_005552[2,15];NIN:NM_020921[1,3]-KLC1:NM_005552[2,15];NIN:NM_182944[1,3]-KLC1:NM_005552[2,15];NIN:NM_182946[1,3]-KLC1:NM_005552[2,15];NIN:NM_016350[1,3]-KLC1:NM_182923[2,15];NIN:NM_020921[1,3]-KLC1:NM_182923[2,15];NIN:NM_182944[1,3]-KLC1:NM_182923[2,15];NIN:NM_182946[1,3]-KLC1:NM_182923[2,15];;;		geneB_transcripts=NM_001130107,NM_005552,NM_182923;geneb_utr_codons=1	,,,,,,,,,,,,,,	2,2,2,2,2,2,2,2,2,2,2,2,,,
	StJude_Sample	GNA12	chr7	2834562	-	coding	AFF3	chr2	100203737	-	coding	>	1	0	217	101	0.005	0.000	50	0	0.017	0.000	254	257	GGACCGCGCGCCGCTCGCGGGCCAGCAGCGCGTCACGGGCTCAAGGGTTCTTGTTGATGCACGAGATAAGCTTGGCATTCCTTGGCAGTATTCTGAAAATGAGAAGCATGGGATGTTCCTGATGGCCTTCGAGAACAAGGCGGGGCTGCCTGTGGAGCCGGCCACCTTCCAGCTGTACGTCCCGGCCCTGAGCGCACTCTGGAGGGATTCTGGCATCAGGGAGGCTTTCAGCCGGAGAAGCGAGTTTCAGCTGGGGGACAACGAAGACGACTACAGGGAGATCAAGAAGTCCCAGGGAGAGAAAGACAGCTCTTCAAGACTGGCCACCTCCACCAGTAATACTTTGTCTGCAAACCA	CTX	5.37	LQ	2	Fusion	1,1,1,1,1,1	NM_001282441,NM_001293092,NM_007353,NM_001282441,NM_001293092,NM_007353	118,176,177,118,176,177	3,2,2,3,2,2	tuple,tuple,tuple,tuple,tuple,tuple	348,525,525,348,525,525		84,83,84,84,83,84	255,252,255,255,252,255	NM_001025108,NM_001025108,NM_001025108,NM_002285,NM_002285,NM_002285	849,849,849,824,824,824	15,15,15,15,15,15	tuple,tuple,tuple,tuple,tuple,tuple	,,,,,	,,,,,	85,85,85,85,85,85	256,256,256,256,256,256	DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN	GNA12:NM_001282441[1,3]-AFF3:NM_001025108[15,24];GNA12:NM_001293092[1,2]-AFF3:NM_001025108[15,24];GNA12:NM_007353[1,2]-AFF3:NM_001025108[15,24];GNA12:NM_001282441[1,3]-AFF3:NM_002285[15,24];GNA12:NM_001293092[1,2]-AFF3:NM_002285[15,24];GNA12:NM_007353[1,2]-AFF3:NM_002285[15,24]	geneB_CDS_mapping_exception=NM_001025108:-2;geneB_CDS_mapping_exception=NM_002285:-2	geneB_transcripts=NM_001025108,NM_002285	,G,,,G,	1,1,1,1,1,1
	StJude_Sample	USP10	chr16	84733718	+	coding	DYRK1A	chr21	38877584	+	coding	>	0	1	104	92	0.665	0.011	0	45	0.010	0.025	137	134	CACACAGGCTGTGGATAAACTACCTGATGGGGTTGTGCGGGCGAGAAGATGGCGGCGGCGGGGGAAGCAGCGTGAGCAGCCGGAGGATCGCGGAGTCCCAATGAAACGGGCAGCCATGGCCCTCCACAGCCCGCAGGAGTACAAACCACCAGGAACCCGTAAACTTCATAACATTCTTGGAGTGGAAACAGGAGGACCTGGTGGGCGACGTGCTGGGGAGTCAGGTAGATCGGAAGAGCGTCGT	CTX	4.22	LQ	2	Fusion	1,1,1,1,1,1,1,1	NM_001272075,NM_005153,NM_001272075,NM_005153,NM_001272075,NM_005153,NM_001272075,NM_005153	56,52,56,52,56,52,56,52	1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,21,,21,,21,,21		9,9,9,9,9,9,9,9	30,30,30,30,30,30,30,30	NM_001396,NM_001396,NM_101395,NM_101395,NM_130436,NM_130436,NM_130438,NM_130438	414,414,414,414,405,405,414,414	9,9,11,11,9,9,9,9	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	1240,1240,1240,1240,1213,1213,1240,1240	2292,2292,1755,1755,2265,2265,1590,1590	45,45,45,45,45,45,45,45	136,136,136,136,136,136,136,136	TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR	USP10:NM_001272075[1,1]-DYRK1A:NM_001396[9,11];USP10:NM_005153[1,1]-DYRK1A:NM_001396[9,11];USP10:NM_001272075[1,1]-DYRK1A:NM_101395[11,13];USP10:NM_005153[1,1]-DYRK1A:NM_101395[11,13];USP10:NM_001272075[1,1]-DYRK1A:NM_130436[9,11];USP10:NM_005153[1,1]-DYRK1A:NM_130436[9,11];USP10:NM_001272075[1,1]-DYRK1A:NM_130438[9,10];USP10:NM_005153[1,1]-DYRK1A:NM_130438[9,10]		geneB_transcripts=NM_001396,NM_101395,NM_130436,NM_130438	VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ	1,1,1,1,1,1,1,1
	StJude_Sample	ZFP41	chr8	144337292	+	intron	CXCR4	chr2	136873486	-	coding	>	1	3	131	47	0.000	0.598	43	51	0.154	0.000	143	139	GCCCAGCATTCAGGGCCAATAGGACGGATTCCCAGGTGTGGATTGACATCTCACCAAATGCCAGCCCCAGGTCATGCCCACAGAGACGCCTGCAGCAGCGCATGGCTGGCAGGACCACCTCAGCCTCTCTAGCAGCAGGCAGATATACACTTCAGATAACTACACCGAGGAAATGGGCTCAGGGG	CTX	3.85	LQ	2	NLoss	0,0,3,3	NM_173832,NM_173832,,	,,,	2,2,,	,,,	,,,		,,,	,,,	NM_001008540,NM_003467,NM_001008540,NM_003467	8,6,8,6	1,2,,	blat,tuple,blat,tuple	24,16,24,16	1071,1059,1071,1059	46,47,,	,,,	PSIQGQ*DGFPGVD*HLTKCQPQVMPTETPAAAHGWQDHLSLSSSRQIYTSDNYTEEMGSG,PSIQGQ*DGFPGVD*HLTKCQPQVMPTETPAAAHGWQDHLSLSSSRQIYTSDNYTEEMGSG,,	ZFP41:NM_173832[1,2]-CXCR4:NM_001008540[1,1];ZFP41:NM_173832[1,2]-CXCR4:NM_003467[2,2];;		geneB_transcripts=NM_001008540,NM_003467	,,,	1,1,,
`

runproteinpaint({
  	host: 'https://proteinpaint.stjude.org',
	holder:document.getElementById('aaa'),
	genome:'hg19',
	fusioneditor:{
		input:rawtext,
		dataname:'cicero test'
	}
})

Visualization Code

const rawtext=`sample	geneA	chrA	posA	ortA	featureA	geneB	chrB	posB	ortB	featureB	sv_ort	readsA	readsB	matchA	matchB	repeatA	repeatB	coverageA	coverageB	ratioA	ratioB	qposA	qposB	contig	type	score	rating	medal	functional effect	frame	sv_refseqA	sv_refseqA_codon	sv_refseqA_exon	sv_refseqA_anchor_type	sv_refseqA_coding_base_number	sv_refseqA_last_coding_base_number	sv_refseqA_AA_index	sv_refseqA_contig_index	sv_refseqB	sv_refseqB_codon	sv_refseqB_exon	sv_refseqB_anchor_type	sv_refseqB_coding_base_number	sv_refseqB_last_coding_base_number	sv_refseqB_AA_index	sv_refseqB_contig_index	sv_AA	sv_desc	sv_processing_exception	sv_general_info	sv_interstitial_AA	sv_frame_index
	StJude_Sample	CD74	chr5	149786753	-	coding	CD74	chr5	149792317	-	coding	>	37	614	69	81	0.566	0.000	1337	23908	0.001	0.517	158	220	TGCTCATTGTTGGAGATAAGGTCGCGCTGGTCATCCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGTGCATCTGGCCACCACCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCTGGACAAACTGACAGTCACCTCCCAGAAGCTTCATGCGCAGGTTCTCCAGCTGCAGGTTCTGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCA	Internal_dup	20750.34	HQ	2	ITD	1,1,1,1,1,1,1,1,1	NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355	87,87,87,87,87,87,87,87,87	2,2,2,2,2,2,2,2,2	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	260,260,260,260,260,260,260,260,260		50,50,50,50,50,50,50,50,50	154,154,154,154,154,154,154,154,154	NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355	-1,-1,-1,-1,-1,-1,-1,-1,-1	1,1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,	483,483,483,891,891,891,699,699,699	74,74,74,74,74,74,74,74,74	224,224,224,224,224,224,224,224,224	LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS	CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8]		geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=2	KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ	2,2,2,2,2,2,2,2,2
	StJude_Sample	CD74	chr5	149786783	-	coding	CD74	chr5	149792317	-	coding	>	8	468	83	84	0.024	0.000	334	3003	0.001	0.517	103	104	ACACGACGCTCTTCCGATCTACACAGGCTTTTCCATCCTGGTGACTCTGCTCCTCGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACA	Internal_dup	5864.68	HQ	2	ITD	0,0,0,0,0,0,0,0,0,2,2,2	NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,,,	,,,,,,,,,,,	2,2,2,2,2,2,2,2,2,,,	,,,,,,,,,,,	230,230,230,230,230,230,230,230,230,,,		,,,,,,,,,,,	,,,,,,,,,,,	NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355,NM_001025158,NM_001025159,NM_004355	-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1	1,1,1,1,1,1,1,1,1,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,,,,	483,483,483,891,891,891,699,699,699,483,891,699	36,36,36,36,36,36,36,36,36,,,	,,,,,,,,,,,	TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,,,	CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8];;;		geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=2	,,,,,,,,,,,	0,0,0,0,0,0,0,0,0,,,
	StJude_Sample	PAX5	chr9	37033986	-	coding	ZCCHC7	chr9	37260450	+	intron	>	33	8	83	175	0.024	0.000	4247	251	0.127	0.066	83	83	CTTTTCCCTGTCCATTCCATCAAGTCCTGAAAAATCAAAATGGATTTAGAGAAAAATTATCCGACTCCTCGGACCAGCAGGACAGTACAAGTTCAAAGTCATTAACAAGTTCAAGATGGCGACAAAGGACCGTTCAACTAAATAGAGGCCCCTTTTGAGAGCAAGCCCATGTGTGACTGCACAAGTTACATACCTGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAAC	ITX	4361.34	HQ	4	CLoss	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3,3,3	NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,,,,	16,16,16,16,,16,16,16,16,,16,16,16,16,16,,16,16,16,16,,16,16,16,16,16,,16,16,16,16,,16,16,16,16,16,,16,16,16,16,,16,,,,	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,,	tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,,,,	43,43,43,43,,43,43,43,43,,43,43,43,43,43,,43,43,43,43,,43,43,43,43,43,,43,43,43,43,,43,43,43,43,43,,43,43,43,43,,43,,,,		27,27,27,27,,27,27,27,27,,27,27,27,27,27,,27,27,27,27,,27,27,27,27,27,,27,27,27,27,,27,27,27,27,27,,27,27,27,27,,27,,,,	83,83,83,83,,83,83,83,83,,83,83,83,83,83,,83,83,83,83,,83,83,83,83,83,,83,83,83,83,,83,83,83,83,83,,83,83,83,83,,83,,,,	NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226	204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204	3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611	1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632	65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,,,,	195,195,195,195,,195,195,195,195,,195,195,195,195,195,,195,195,195,195,,195,195,195,195,195,,195,195,195,195,,195,195,195,195,195,,195,195,195,195,,195,,,,	LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,,,,	PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_032226[3,9];;;;		geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226;not_inframe_due_to_intermediate_stop_codon	VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,,,	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,,,
	StJude_Sample	PAX5	chr9	37033982	-	coding	ZCCHC7	chr9	37302188	+	coding	>	31	63	129	293	0.000	0.017	1041	1903	0.127	0.051	129	131	AAAAAAAAAAAAAAAAAAAAAAAAAGGCACAAAAAAGTGGAAACTTTTCCCTGTCCATTCCATCAAGTCCTGAAAAATCAAAATGGATTTAGAGAAAAATTATCCGACTCCTCGGACCAGCAGGACAGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGGTCATTTATCAAAAAACTGCCCCTTACCACGAAAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGG	ITX	3486.65	HQ	4	Fusion	1,1,1,1,0,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,0,1	NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734	17,17,17,17,,17,17,17,17,,17,17,17,17,17,,17,17,17,17,,17,17,17,17,17,,17,17,17,17,,17,17,17,17,17,,17,17,17,17,,17	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple	46,46,46,46,,46,46,46,46,,46,46,46,46,46,,46,46,46,46,,46,46,46,46,46,,46,46,46,46,,46,46,46,46,46,,46,46,46,46,,46		42,42,42,42,,42,42,42,42,,42,42,42,42,42,,42,42,42,42,,42,42,42,42,42,,42,42,42,42,,42,42,42,42,42,,42,42,42,42,,42	129,129,129,129,,129,129,129,129,,129,129,129,129,129,,129,129,129,129,,129,129,129,129,129,,129,129,129,129,,129,129,129,129,129,,129,129,129,129,,129	NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226	205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205	3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614	1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632	43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43	130,130,130,130,,130,130,130,130,,130,130,130,130,130,,130,130,130,130,,130,130,130,130,130,,130,130,130,130,,130,130,130,130,130,,130,130,130,130,,130	KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW	PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_032226[3,9]		geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1
	StJude_Sample	ATF7IP	chr12	14634119	+	coding	JAK2	chr9	5080229	+	coding	>	30	49	286	210	0.000	0.000	1184	1475	0.176	0.025	287	287	GTGTCACGACCATTGCAACCCATACAACCAGCACCGCCTCTTCAACCATCTGGGGTGCCAACAAGTGGACCATCTCAGACCACCATACACTTACTACCTACAGCTCCAACTACCGTGAATGTAACACATCGTCCAGTAACTCAGGTGACCACAAGACTCCCTGTACCAAGAGCTCCTGCAAACCACCAGGTGGTTTATACAACTCTTCCTGCACCACCAGCTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGTCAATCCCCAAAATATTCTTCAGGAGAGAATACCATGGGTACCACCTGAATGCATTGAAAATCCTAAAAATTTAAATTTGGCAACAGACAAATGGAGTTTTGGTACCACTTTGTGGGAAATCTGCAGTGGAGGAGATAAACCTCTAAGTGCTCTGGATTCTCAAAGAAAGCTACAATTTTATGAAGATAGGCATCAGCTTCCTGCACCAAATTTGTTTACTCCAGAA	CTX	2767.24	HQ	4	Fusion	1,1,1,1	NM_001286514,NM_001286515,NM_018179,NM_181352	1093,1093,1094,1102	13,13,13,13	perfect,perfect,perfect,perfect	3277,3277,3280,3304		94,94,94,94	284,284,284,284	NM_004972,NM_004972,NM_004972,NM_004972	711,711,711,711	17,17,17,17	tuple,tuple,tuple,tuple	2132,2132,2132,2132	3399,3399,3399,3399	95,95,95,95	285,285,285,285	VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE,VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE,VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE,VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE	ATF7IP:NM_001286514[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_001286515[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_018179[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_181352[1,13]-JAK2:NM_004972[17,25]		geneB_transcripts=NM_004972	,,,	0,0,0,0
	StJude_Sample	JAK2	chr9	5077580	+	coding	ATF7IP	chr12	14644992	+	intron	>	9	8	128	199	0.000	0.000	1295	191	0.099	0.055	160	161	AAATTATGGAGTATGTGTCTGTGGAGACGAGAATATTCTGGTTCAGGAGTTTGTAAAATTTGGATCACTAGATACATATCTGAAAAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTATAGCCCTCACCTTACCAGTCAAGGAGCCAATGTGGTGGTTCTGCCAGCTGCTAAGTATGTCGATGCCAATTATGCATTTTGGCACTGCGGAAATGACCACAGGATGAATCCAGGAATCCACTGGATCCACTGTGTTACAGTTCGAGTGCCTCAAACAACCACATATGTTGTAAACAATGGACTAACCCTGGGATCAACAGTGGCACA	CTX	857.91	HQ	4	CLoss	0,0,0,3,3,3	NM_004972,NM_004972,NM_004972,,,	,,,,,	15,15,15,,,	,,,,,	1992,1992,1992,,,		,,,,,	,,,,,	NM_001286514,NM_018179,NM_181352,NM_001286514,NM_018179,NM_181352	1093,1094,1102,1093,1094,1102	14,14,14,,,	blat,blat,blat,blat,blat,blat	3278,3281,3305,3278,3281,3305	3810,3813,3837,3810,3813,3837	97,97,97,,,	,,,,,	IMEYVSVETRIFWFRSL*NLDH*IHI*KRIKIV*IYYGNLKLLNSWHGPCIFYSPHLTSQGANVVVLPAAKYVDANYAFWHCGNDHRMNPGIHWIHCVTVRVPQTTTYVVNNGLTLGSTVA,IMEYVSVETRIFWFRSL*NLDH*IHI*KRIKIV*IYYGNLKLLNSWHGPCIFYSPHLTSQGANVVVLPAAKYVDANYAFWHCGNDHRMNPGIHWIHCVTVRVPQTTTYVVNNGLTLGSTVA,IMEYVSVETRIFWFRSL*NLDH*IHI*KRIKIV*IYYGNLKLLNSWHGPCIFYSPHLTSQGANVVVLPAAKYVDANYAFWHCGNDHRMNPGIHWIHCVTVRVPQTTTYVVNNGLTLGSTVA,,,	JAK2:NM_004972[1,15]-ATF7IP:NM_001286514[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_018179[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_181352[14,15];;;		geneB_transcripts=NM_001286514,NM_018179,NM_181352	,,,,,	2,2,2,,,
	StJude_Sample	JAK2	chr9	5078418	+	coding	ATF7IP	chr12	14644072	+	intron	>	21	14	233	176	0.000	0.000	750	466	0.274	0.000	234	250	GTTTCAGGAGTTTGTAAAATTTGGATCACTAGATACATATCTGAAAAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGAAGAAAACACCCTTATTCATGGGAATGTATGTGCCAAAAATATTCTGCTTATCAGAGAAGAAGACAGGAAGACAGGAAATCCTCCTTTCATCAAACTTAGTGATCCTGGCATAGAAATTAGAACGGGGCCAAGTGGCAGAACAGCTTGCCCAGTAGCACGGACCTGCTGCAGAGCCTTCTCCTGTTCTGGACCACACTCAAAACTGGCAGCCTTTCAGGTCACTTGATAAATGGGCTGGAGTAACACACCCACATGAGGAATGTGTTGCCTCCAACATCCAAATAGGTCCACTAGACGTTGTGC	CTX	750.00	HQ	4	CLoss	,,	NM_004972,NM_004972,NM_004972	,,	,,	,,	2105,2105,2105		,,	,,	NM_001286514,NM_018179,NM_181352	,,	,,	,,	3278,3281,3305	3810,3813,3837	,,	,,	,,	;;	geneB_no_inframe_contig_found	geneB_transcripts=NM_001286514,NM_018179,NM_181352	,,	,,
	StJude_Sample	PAX5	chr9	37033982	-	coding	NA	chr14	57508194	+	intergenic	>	31	0	129	64	0.000	0.529	876	1	0.127	0.000	130	127	AAAAAAAAAAAAAAAAAAAAAAAAAGGCACAAAAAAGTGGAAACTTTTCCCTGTCCATTCCATCAAGTCCTGAAAAATCAAAATGGATTTAGAGAAAAATTATCCGACTCCTCGGACCAGCAGGACAGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACCGAACACC	CTX	412.24	HQ	1	CLoss	,,,,,,,,,,	NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	46,46,46,46,,46,46,46,46,,46		,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	,,,,,,,,,,	;;;;;;;;;;	geneB_no_transcripts		,,,,,,,,,,	,,,,,,,,,,
	StJude_Sample	ERICH1-AS1	chr8	687825	+	5utr	ERICH1	chr8	624049	-	coding	>	7	1	208	184	0.000	0.000	348	22	0.159	0.034	209	207	CCGGCCGTGAAGACCGACCGTGCGCCGGGCTCGAGCGCGGTCTGAGCGCGCGGCGCCTGCGGCGGCGAACGGACGGACGGACCGCGGACGGACGTACTGACCCCAACCCGCGAGCCCCGGGAGCCGTCGGTCTGAGGAGGGGCCGCTTCGCCATGTCGCCCCGCACCTGCTGAGCCCGGAGCGTCCGAGGATGTCCGCGCTGAGGAAGATCAGGATCCTCATGACCAGCCAAAGAGAAGAAGAATTAGGAAGCATAAATCAAAGAAAAAATTTAAAAATCCCAATAATGTTCTTATAGAACAAGCAGAATTAGAGAAACAGCAGAGTCTGTTACAGGAGAAATCTCAGCGACAGCACACAGATGGCACCACAATAAGCAAAAATAAAAAA	ITX	353.16	HQ	0	NLoss	0									NM_207332	102		tuple	305	1332					geneA_no_transcript_IDs_found	geneB_transcripts=NM_207332		
	StJude_Sample	JAK2	chr9	5077582	+	coding	ATF7IP	chr12	14649165	+	coding	>	7	2	78	149	0.000	0.000	321	20	0.099	0.025	79	77	AAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGTGTTACAGTTCGAGTGCCTCAAACAACCACATATGTTGTAAACAATGGACTAACCCTGGGATCAACAGGACCTCAGCTCACAGTGCATCACCGACCACCACAAGTGCATACTGAGCCCCCACGCCCCGTGCACCCAGCACCCTTACCA	CTX	196.40	HQ	4	Fusion	0,0,0,3,3,3	NM_004972,NM_004972,NM_004972,,,	,,,,,	15,15,15,,,	,,,,,	1992,1992,1992,,,		,,,,,	,,,,,	NM_001286514,NM_018179,NM_181352,NM_001286514,NM_018179,NM_181352	1093,1094,1102,1093,1094,1102	14,14,14,,,	tuple,tuple,tuple,tuple,tuple,tuple	3278,3281,3305,3278,3281,3305	3810,3813,3837,3810,3813,3837	25,25,25,,,	,,,,,	KE*KLYKYIMET*SC*TVGMGHAFSSVTVRVPQTTTYVVNNGLTLGSTGPQLTVHHRPPQVHTEPPRPVHPAPLP,KE*KLYKYIMET*SC*TVGMGHAFSSVTVRVPQTTTYVVNNGLTLGSTGPQLTVHHRPPQVHTEPPRPVHPAPLP,KE*KLYKYIMET*SC*TVGMGHAFSSVTVRVPQTTTYVVNNGLTLGSTGPQLTVHHRPPQVHTEPPRPVHPAPLP,,,	JAK2:NM_004972[1,15]-ATF7IP:NM_001286514[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_018179[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_181352[14,15];;;		geneB_transcripts=NM_001286514,NM_018179,NM_181352	,,,,,	0,0,0,,,
	StJude_Sample	CD74	chr5	149785840	-	coding	CD74	chr5	149792314	-	coding	>	352	206	45	62	0.151	0.000	404	1316	0.000	0.173	60	60	GCCCTGCCCCAGGGGCCCATGCAGAATGCCACCAAGTATGGCAACATGACAGAGGACCAGAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAG	Internal_dup	183.44	HQ	2	ITD	0,0,0,0,0,0,0,0,0,2,2,2	NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,,,	,,,,,,,,,,,	4,4,4,4,4,4,4,4,4,,,	,,,,,,,,,,,	423,423,423,423,423,423,423,423,423,,,		,,,,,,,,,,,	,,,,,,,,,,,	NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355,NM_001025158,NM_001025159,NM_004355	0,0,0,0,0,0,0,0,0,0,0,0	1,1,1,1,1,1,1,1,1,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,,,,	483,483,483,891,891,891,699,699,699,483,891,699	20,20,20,20,20,20,20,20,20,,,	,,,,,,,,,,,	PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,,,	CD74:NM_001025158[1,4]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,4]-CD74:NM_001025158[1,6];CD74:NM_004355[1,4]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,4]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,4]-CD74:NM_001025159[1,9];CD74:NM_004355[1,4]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,4]-CD74:NM_004355[1,8];CD74:NM_001025159[1,4]-CD74:NM_004355[1,8];CD74:NM_004355[1,4]-CD74:NM_004355[1,8];;;		geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=1	,,,,,,,,,,,	2,2,2,2,2,2,2,2,2,,,
	StJude_Sample	ATF7IP	chr12	14634119	+	coding	JAK2	chr9	5081725	+	coding	>	1	2	67	80	0.000	0.000	81	126	0.176	0.010	67	68	GCTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGTCAATCCCCAAAATAATTATGAACTATTAACAGAAAATGACATGTTACCAAATATGAGGATAGGTGCCCTGGGGTTTTCTGGTGCATTTGAAGACC	CTX	163.88	HQ	4	Fusion	1,1,1,1	NM_001286514,NM_001286515,NM_018179,NM_181352	1093,1093,1094,1102	13,13,13,13	tuple,tuple,tuple,tuple	3277,3277,3280,3304		21,21,21,21	65,65,65,65	NM_004972,NM_004972,NM_004972,NM_004972	812,812,812,812	19,19,19,19	blat,blat,blat,blat	2435,2435,2435,2435	3399,3399,3399,3399	23,23,23,23	69,69,69,69	AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED,AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED,AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED,AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED	ATF7IP:NM_001286514[1,13]-JAK2:NM_004972[19,25];ATF7IP:NM_001286515[1,13]-JAK2:NM_004972[19,25];ATF7IP:NM_018179[1,13]-JAK2:NM_004972[19,25];ATF7IP:NM_181352[1,13]-JAK2:NM_004972[19,25]		geneB_transcripts=NM_004972	N,N,N,N	0,0,0,0
	StJude_Sample	FBXL13	chr7	102608469	-	coding	HLA-DPB1	chr6	33043815	+	coding	>	2	4	88	51	0.000	0.000	62	74	1.000	0.000	89	89	CTACCTCAGTTTAAAAGATGTGATAATATGTGGTCAAGTTAATCATGCCTGGATGTTGATGACACAACTAAACTCACTGTGGAATGCTCTCCATGATGGTTCTGCAGGTTTCTGCGGCCCCCCGGACAGTGGCTCTGAC	CTX	124.00	HQ	0	upTSS	0,0,0,2	NM_001111038,NM_001287150,NM_145032,	,,,	7,7,7,	,,,	591,591,591,		,,,	,,,	NM_002121,NM_002121,NM_002121,NM_002121	-1,-1,-1,-1	1,1,1,	tuple,tuple,tuple,tuple	,,,	777,777,777,777	30,30,30,	,,,	TSV*KM**YVVKLIMPGC**HN*THCGMLSMMVLQVSAAPRTVAL,TSV*KM**YVVKLIMPGC**HN*THCGMLSMMVLQVSAAPRTVAL,TSV*KM**YVVKLIMPGC**HN*THCGMLSMMVLQVSAAPRTVAL,	FBXL13:NM_001111038[1,7]-HLA-DPB1:NM_002121[1,6];FBXL13:NM_001287150[1,7]-HLA-DPB1:NM_002121[1,6];FBXL13:NM_145032[1,7]-HLA-DPB1:NM_002121[1,6];	geneB_breakpoint_not_mapped_to_CDS=NM_001242524;geneB_breakpoint_not_mapped_to_CDS=NM_001242525	geneB_transcripts=NM_001242524,NM_001242525,NM_002121;geneB_transcript_strand_disagree=NM_001242524;geneB_intronic=NM_001242524;geneB_transcript_strand_disagree=NM_001242525;geneB_intronic=NM_001242525;geneb_utr_codons=2	,,,	2,2,2,
	StJude_Sample	NDUFB2	chr7	140404764	+	3utr	KRIT1	chr7	91864921	-	coding	>	16	2	30	75	0.000	0.000	109	63	0.214	0.028	30	38	AGGTGTAGACTCAGCCTCACTCTGTACAAGAGCCAGGAAGCTTTATTCCGACCTTCTCCTCTTGAGCGGATAAAAACTAATGTCATAAATCCTGCATATGCTACTGAATCAGGA	ITX	109.00	HQ	0	NLoss	0,0,0,0,0,0,0,0,0,0	NM_004546,NM_004546,NM_004546,NM_004546,NM_004546,,,,,	,,,,,,,,,	3,3,3,3,3,,,,,	,,,,,,,,,	,,,,,,,,,		,,,,,,,,,	,,,,,,,,,	NM_001013406,NM_004912,NM_194454,NM_194455,NM_194456,NM_001013406,NM_004912,NM_194454,NM_194455,NM_194456	175,175,175,175,175,175,175,175,175,175	7,8,8,8,9,,,,,	blat,blat,blat,blat,blat,blat,blat,blat,blat,blat	525,525,525,525,525,525,525,525,525,525	2067,2211,2211,2211,2211,2067,2211,2211,2211,2211	13,13,13,13,13,,,,,	,,,,,,,,,	RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,,,,,	NDUFB2:NM_004546[1,3]-KRIT1:NM_001013406[7,17];NDUFB2:NM_004546[1,3]-KRIT1:NM_004912[8,19];NDUFB2:NM_004546[1,3]-KRIT1:NM_194454[8,19];NDUFB2:NM_004546[1,3]-KRIT1:NM_194455[8,19];NDUFB2:NM_004546[1,3]-KRIT1:NM_194456[9,20];;;;;		geneB_transcripts=NM_001013406,NM_004912,NM_194454,NM_194455,NM_194456	,,,,,,,,,	0,0,0,0,0,,,,,
	StJude_Sample	ZCCHC7	chr9	37126940	+	coding	PAX5	chr9	37020808	-	intron	>	5	2	155	71	0.492	0.101	156	48	0.051	0.000	156	142	ATGATTATAGAGGTCAGTTCAAGTGAAGAGGAAGAGAGCACCATTTCAGAAGGTGATAATGTGGAAAGCTGGATGCTACTGGGATGTGAAGTAGATGATAAAGATGATGATATCCTTCTCAACCTTGTGGGATGTGAAAACTCTGTTACTGAAGGACATGGAGGAGTGAATCAGCTTGGGGGGGTTTTTGTGAATGGACGGCCACTCCCGGATGTAGTCCGCCA	ITX	105.39	HQ	4	Fusion	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1	NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226	204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204	2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2	perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect	610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610		50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50	152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152	NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_016734,NM_016734,NM_016734,NM_016734	16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16	2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47	1074,1074,1074,1074,1089,1089,1089,1089,975,975,975,975,888,888,888,888,987,987,987,987,960,960,960,960,1047,1047,1047,1047,876,876,876,876,1176,1176,1176,1176	51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51	153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153	MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR	ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_016734[2,10];ZCCHC7:NM_001289120[1,2]-PAX5:NM_016734[2,10];ZCCHC7:NM_001289121[1,2]-PAX5:NM_016734[2,10];ZCCHC7:NM_032226[1,2]-PAX5:NM_016734[2,10]	geneB_no_inframe_contig_found	geneB_transcripts=NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734;geneb_utr_codons=13	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
	StJude_Sample	AKAP13	chr15	85924029	+	5utr	B2M	chr15	45007620	+	coding	>	2	7	190	85	0.016	0.000	95	26	0.158	0.005	191	191	CAGGGCCAGCGCGGAGCCCGAGCAGCCGCGGTGAAGCGCCTGTGCTCTGCCGAGACTGCCGTGCCCATTGCTCGCCTCGGTCGCCGCCGCTTTAGCCGCCTCCGGGGGAGCGGCCGCCTATTGTCTTTCTCCGCGGCGAAGGTGAAGAGTTGTCCCAGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTACTCCAAAGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTC	INS	95.00	HQ	1	NLoss	0,0,0	NM_006738,NM_007200,	,,	1,1,	,,	,,		,,	,,	NM_004048,NM_004048,NM_004048	23,23,23	2,2,	blat,blat,blat	68,68,68	360,360,360	64,64,	,,	RASAEPEQPR*SACALPRLPCPLLASVAAALAASGGAAAYCLSPRRR*RVVPARPAGEPREPHGTPKIQVYSRHPAENGKSNFLNCYVSGF,RASAEPEQPR*SACALPRLPCPLLASVAAALAASGGAAAYCLSPRRR*RVVPARPAGEPREPHGTPKIQVYSRHPAENGKSNFLNCYVSGF,	AKAP13:NM_006738[1,1]-B2M:NM_004048[2,4];AKAP13:NM_007200[1,1]-B2M:NM_004048[2,4];		geneB_transcripts=NM_004048	,,	1,1,
	StJude_Sample	PAX5	chr9	37035717	-	intergenic	ZCCHC7	chr9	37302188	+	coding	>	0	4	65	60	0.000	0.528	1	208	0.000	0.051	65	67	CTGGGGCTGGGCTGCGGAGGGAAAGAGTCGAGCACTCGGAGATGGCCAAAAATCAAATCTCGGGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACC	ITX	78.67	HQ	4	NLoss	0,0,0,0	,,,	,,,	,,,	,,,	,,,		,,,	,,,	NM_001289119,NM_001289120,NM_001289121,NM_032226	205,205,205,205	,,,	tuple,tuple,tuple,tuple	614,614,614,614	1632,1632,1632,1632	,,,	,,,	,,,	;;;	geneA_no_transcript_IDs_found	geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226	,,,	,,,
	StJude_Sample	STK24	chr13	99171500	-	coding	MIR17HG,MIR17,MIR18A,MIR19A,MIR20A,MIR19B1,MIR92A1	chr13	92001950	+	5utr	>	3	2	167	86	0.012	0.000	18	66	0.007	0.250	167	167	TGGAGAGGTGTTCAAAGGCATTGACAATCGGACTCAGAAAGTGGTTGCCATAAAGATCATTGATCTGGAAGAAGCTGAAGATGAGATAGAGGACATTCAACAAGAAATCACAGTGCTGAGTCAGTGTGACAGTCCATATGTAACCAAATATTATGGATCCTATCTGAAGTCATACACGTGGACCTAACTGCACCAGTAGCTTTTCTGAGAATACTTGCTGAAAAGGAAGTTTTCTGGAATGGGTAAGTGTATT	ITX	65.23	HQ	0	CLoss	,,	NM_001032296,NM_001286649,NM_003576	,,	,,	,,	270,270,306		,,	,,	,,	,,	,,	,,	,,	,,	,,	,,	,,	;;	geneB_no_transcripts		,,	,,
	StJude_Sample	JAK2	chr9	5077581	+	coding	ATF7IP	chr12	14644504	+	intron	>	3	4	75	138	0.000	0.738	224	102	0.099	0.026	75	74	AGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGAGCAAAAAGTGATCAAGGTCTCTCTGAATAAGATTATGACACAAAGCTGGAGAGTTGATACACCCCTGAGTAGCCCTCACCTTACCAGTCAAGGAGCCAATGTGGTGGTTCTGCCAGCTGCTAAGTATGTCGATGCC	CTX	50.85	HQ	4	CLoss	,,	NM_004972,NM_004972,NM_004972	,,	,,	,,	1992,1992,1992		,,	,,	NM_001286514,NM_018179,NM_181352	,,	,,	,,	3278,3281,3305	3810,3813,3837	,,	,,	,,	;;	geneB_no_inframe_contig_found	geneB_transcripts=NM_001286514,NM_018179,NM_181352	,,	,,
	StJude_Sample	CD74	chr5	149786809	-	coding	CD74	chr5	149792317	-	coding	>	6	440	42	48	0.000	0.000	134	1360	0.001	0.517	43	68	ATCCTGGTGACTCTGCTCCTCGCTGGCCAGGCCACCACCGCCACATACCGGGGCCCCAGGGCGCCGGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGC	Internal_dup	49.82	HQ	2	ITD	1,1,1,1,1,1,1,1,1	NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355	69,69,69,69,69,69,69,69,69	2,2,2,2,2,2,2,2,2	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	204,204,204,204,204,204,204,204,204		13,13,13,13,13,13,13,13,13	41,41,41,41,41,41,41,41,41	NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355	-1,-1,-1,-1,-1,-1,-1,-1,-1	1,1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,	483,483,483,891,891,891,699,699,699	24,24,24,24,24,24,24,24,24	72,72,72,72,72,72,72,72,72	ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK	CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8]		geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=2	TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ	0,0,0,0,0,0,0,0,0
	StJude_Sample	SLC35E1	chr19	16683619	+	intergenic	BRD4	chr19	15383946	-	5utr	>	1	3	49	174	0.000	0.000	7	91	0.150	0.041	49	47	GCTAACTAGATTCCTGATTCCTGATGGCTGGCGGCGGCTGACACCAAAGAGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCAAATGTCTACAACACAGGCCCAGGCCCAACCCCAGCCAGCCAACGCAGCCAGCACCAACCCCCCG	ITX	46.43	HQ	2	upTSS	2,2	,	,	,	,	,		,	,	NM_014299,NM_058243	-11,-11	,	tuple,tuple	,	2169,4089	,	,	,	;	geneA_no_transcript_IDs_found	geneB_transcripts=NM_014299,NM_058243;geneb_utr_codons=12	,	,
	StJude_Sample	CD74	chr5	149786833	+	coding	CD74	chr5	149792314	-	coding	?	2	800	77	90	0.000	0.072	172	8110	0.000	0.173	122	127	TTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCCGTGCAGCTCGGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCTGCTGCTGGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGTCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACT	Internal_inv	40.55	HQ	3	Fusion																				unhandled orientation ?			
	StJude_Sample	CD74	chr5	149786859	+	coding	CD74	chr5	149792314	-	coding	?	2	499	69	85	0.000	0.034	159	6042	0.000	0.173	103	104	CTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCTGCTGGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACCAGGATGGAAAAGCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAG	Internal_inv	30.21	HQ	3	Fusion																				unhandled orientation ?			
	StJude_Sample	CCND3	chr6	42016238	-	5utr	IGH	chr14	106322323	-	5utr	>	1	6	189	68	0.000	0.029	29	170	0.011	0.028	189	188	AAACACTTCGCCACTGCAGGGGTGGAGACTGGCTCTGTTCGGATGCCGGCCGGGGGGGAGAGGTGCAATCCTCTCCTCGCGGCTGGTGGTTGCGACCACCCCCACTCCCCAAAGGCAGGCTCCGGAGGCGGCGGGACAGAGCGCCTGCGACCCCAGTCGGTGCTCCGGGGAGGTCACCTGACGAGGAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGC	CTX	28.33	HQ	4	other	,,	NM_001136017,NM_001136126,NM_001287434	,,	,,	,,	,,		,,	,,	,,	,,	,,	,,	,,	,,	,,	,,	,,	;;	geneB_no_transcripts		,,	,,
	StJude_Sample	CD74	chr5	149786797	+	coding	CD74	chr5	149792310	-	coding	?	10	389	62	98	0.127	0.000	348	4175	0.000	0.173	118	118	CCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGTGCATCTGCAGGTTCTCCAGCTGCAGGTTCTGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCTGCTGCTGGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACTGCCCATGCTGG	Internal_inv	18.23	HQ	3	Fusion																				unhandled orientation ?			
	StJude_Sample	GLTSCR2	chr19	48249040	+	coding	DHX34	chr19	47885236	+	coding	>	36	3	48	94	0.534	0.000	28	67	0.003	0.105	49	49	GAGGTTGACCAGTTCCTGGAAGACGTGCGGCTACAGGAGCGCACGAGCGGGGGCTGAGGAAGCTGCCCTCGAAACCCTCCAGAAGACATCTGTCCTGCAGAGGCCCTACCACTGCGAGGCCTGCGGGAAGGACTTCCTCTTTA	INS	11.49	HQ	0	Fusion	0,0	NM_015710,	,	1,	,	224,		,	,	NM_014681,NM_014681	1100,1100	17,	tuple,tuple	3299,3299	3432,3432	16,	,	RLTSSWKTCGYRSARAGAEEAALETLQKTSVLQRPYHCEACGKDFLF,	GLTSCR2:NM_015710[1,1]-DHX34:NM_014681[17,17];		geneB_transcripts=NM_014681	,	1,
	StJude_Sample	ATF7IP	chr12	14634119	+	coding	JAK2	chr9	5080301	+	coding	>	0	3	66	80	0.000	0.000	0	131	0.176	0.011	66	66	CTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGTCAATCCCCAAAATAACAAATGGAGTTTTGGTACCACTTTGTGGGAAATCTGCAGTGGAGGAGATAAACCTCTAAGTGCTCTGGATTCTCAAAGAA	CTX	2.98	HQ	4	Fusion	1,1,1,1	NM_001286514,NM_001286515,NM_018179,NM_181352	1093,1093,1094,1102	13,13,13,13	tuple,tuple,tuple,tuple	3277,3277,3280,3304		20,20,20,20	64,64,64,64	NM_004972,NM_004972,NM_004972,NM_004972	735,735,735,735	17,17,17,17	blat,blat,blat,blat	2204,2204,2204,2204	3399,3399,3399,3399	22,22,22,22	68,68,68,68	QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR,QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR,QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR,QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR	ATF7IP:NM_001286514[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_001286515[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_018179[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_181352[1,13]-JAK2:NM_004972[17,25]		geneB_transcripts=NM_004972	N,N,N,N	2,2,2,2
	StJude_Sample	MNT	chr17	2303934	-	coding	SEPT9	chr17	75478225	+	coding	>	1	2	138	58	0.000	0.000	47	52	0.077	0.033	139	139	CTGACCTGTGCCCGGCTCGCGGGCCGCCGCCTCGGCCCCGGCGCGCCCCCGGCAGCTCTCGGCGCGATGAGCATAGAGACGCTACTGGAGGCGGCCCGCTTCCTGGAATGGCAAGCGCAGCAACAACAGAGAGCACGTGCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGAGATGCCG	ITX	72.03	LQ	2	Fusion	1,1,1,1,1,1,1,1,1,1,1	NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310	25,25,25,25,25,25,25,25,25,25,25	1,1,1,1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	73,73,73,73,73,73,73,73,73,73,73		45,45,45,45,45,45,45,45,45,45,45	137,137,137,137,137,137,137,137,137,137,137	NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640	241,77,234,77,129,-10,222,17,-10,-10,223	4,4,3,3,2,2,3,2,2,2,3	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	722,230,701,230,386,,665,50,,,668	1761,1269,1740,1269,1425,1008,1704,1089,1008,1008,1707	46,46,46,46,46,49,46,46,49,49,46	138,138,138,138,138,147,138,138,147,147,138	LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA	MNT:NM_020310[1,1]-SEPT9:NM_001113491[4,12];MNT:NM_020310[1,1]-SEPT9:NM_001113492[4,12];MNT:NM_020310[1,1]-SEPT9:NM_001113493[3,11];MNT:NM_020310[1,1]-SEPT9:NM_001113494[3,11];MNT:NM_020310[1,1]-SEPT9:NM_001113495[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001113496[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001293695[3,11];MNT:NM_020310[1,1]-SEPT9:NM_001293696[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001293697[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001293698[2,10];MNT:NM_020310[1,1]-SEPT9:NM_006640[3,11]		geneB_transcripts=NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640;geneb_utr_codons=11	,,,,,ATE,,,ATE,ATE,	0,0,0,0,0,0,0,0,0,0,0
	StJude_Sample	HIPK2	chr7	139415730	-	coding	TCF12	chr15	57212088	+	5utr	>	2	0	138	136	0.000	0.000	55	0	0.080	0.019	139	137	CGCTGACCTCAAACCAGAAAACATCATGCTGGTGGATCCATCTAGACAACCATACAGAGTCAAGGTCATCGACTTTGGTTCAGCCAGCCACGTGTCCAAGGCTGTGTGCTCCACCTACTTGCAGTCCAGATATTACAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGAC	CTX	58.67	LQ	2	upTSS	0,0,0,0,0,0,0,0,2,2,2,2	NM_001113239,NM_022740,NM_001113239,NM_022740,NM_001113239,NM_022740,NM_001113239,NM_022740,,,,	369,369,369,369,369,369,369,369,,,,	2,2,2,2,2,2,2,2,,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,,	1103,1103,1103,1103,1103,1103,1103,1103,,,,		45,45,45,45,45,45,45,45,,,,	138,138,138,138,138,138,138,138,,,,	NM_003205,NM_003205,NM_207036,NM_207036,NM_207037,NM_207037,NM_207038,NM_207038,NM_003205,NM_207036,NM_207037,NM_207038	-7,-7,-3,-3,-7,-7,-3,-3,-7,-3,-7,-3	2,2,2,2,2,2,2,2,,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,,,,	2049,2049,2121,2121,2121,2121,2049,2049,2049,2121,2121,2049	48,48,52,52,48,48,52,52,,,,	145,145,157,157,145,145,157,157,,,,	ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,,,,	HIPK2:NM_001113239[1,2]-TCF12:NM_003205[2,20];HIPK2:NM_022740[1,2]-TCF12:NM_003205[2,20];HIPK2:NM_001113239[1,2]-TCF12:NM_207036[2,21];HIPK2:NM_022740[1,2]-TCF12:NM_207036[2,21];HIPK2:NM_001113239[1,2]-TCF12:NM_207037[2,21];HIPK2:NM_022740[1,2]-TCF12:NM_207037[2,21];HIPK2:NM_001113239[1,2]-TCF12:NM_207038[2,20];HIPK2:NM_022740[1,2]-TCF12:NM_207038[2,20];;;;		geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038;geneb_utr_codons=8;not_inframe_due_to_intermediate_stop_codon;geneb_utr_codons=4	TC,TC,TC*KWP,TC*KWP,TC,TC,TC*KWP,TC*KWP,,,,	1,1,1,1,1,1,1,1,,,,
	StJude_Sample	GUSBP4	chr6	58285306	-	3utr	HLA-DPB1	chr6	33043816	+	coding	>	1	5	85	48	0.656	0.020	48	176	0.111	0.026	97	97	GTTCGGGGTTCGGTAAAAAAGCTCACACATTTGACTTGGAAGCAATGTTTGAACAAACTCAAAGAACAGCTGTGGAAAGAAGTCACAAAACACTGGCTCCATGATGGTTCTGCAGGTTTCTGCGGCCCCCCGGACAGTGGCTCT	ITX	52.26	LQ	0	upTSS	2									NM_002121	0		tuple		777					geneB_breakpoint_not_mapped_to_CDS=NM_001242524;geneB_breakpoint_not_mapped_to_CDS=NM_001242525;geneA_no_transcript_IDs_found	geneB_transcripts=NM_001242524,NM_001242525,NM_002121;geneB_transcript_strand_disagree=NM_001242524;geneB_intronic=NM_001242524;geneB_transcript_strand_disagree=NM_001242525;geneB_intronic=NM_001242525;geneb_utr_codons=1		
	StJude_Sample	TRAK2	chr2	202260037	-	coding	RFPL1S	chr22	29819177	-	intergenic	>	1	3	130	53	0.000	0.500	53	50	0.008	0.224	142	143	TAAAGAACTTCGTGAAACAAATGCTCAGATGTCCAGAATGACTGAAGAATTGTCAGGGAAGAGTGATGAGCTGATTCGATACCAAGAAGAGCTTTCCTCTCTTTTGTCACAGATTGTAGACCTTCAGCATAAACTTAAAGAAAAGCCTGGCTACAGATAAGGGACCAAAATGACTGACTCAAAATATTTCACCAC	CTX	50.05	LQ	0	CLoss		NM_015049				900														geneB_no_transcripts			
	StJude_Sample	LOC440311	chr15	95398934	+	5utr	DHX34	chr19	47885236	+	coding	>	0	3	52	94	0.495	0.000	1	67	0.000	0.105	55	49	GAGGTTGACCAGTTCCTGGAAGACGTGCGGCTACAGGAGCGCACGAGCGGGGGCTGAGGAAGCTGCCCTCGAAACCCTCCAGAAGACATCTGTCCTGCAGAGGCCCTACCACTGCGAGGCCTGCGGGAAGGACTTCCTCTTTA	CTX	33.83	LQ	0	NLoss	0									NM_014681	1100		tuple	3299	3432					geneA_no_transcript_IDs_found	geneB_transcripts=NM_014681		
	StJude_Sample	GPSM1	chr9	139235450	+	coding	SEPT9	chr17	75478221	+	coding	>	1	0	190	55	0.000	0.000	49	0	0.040	0.000	191	185	GTGTCCATGGGGCGCCCAGCGCAGGCCCTGACCTTCGCCAAGAAGCACCTGCAGATCTCCCAGGAGATCGGGGACCGCCATGGGGAGCTCACGGCCCGCATGAACGTGGCGCAGCTGCAGCTGGTGCTCGGCCGCCTGACCAGCCCGGCAGCCTCAGAGAAGCCTGACCTGGCCGGCTATGAGGCCCAGGCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGA	CTX	28.36	LQ	2	Fusion	1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1	NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597	403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403	9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9	perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,tuple,tuple,perfect,perfect,perfect,perfect,tuple,tuple,tuple,tuple,perfect,perfect	,,,,,,,,,,,,,,,,,,,,,		62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62	188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188	NM_001113491,NM_001113491,NM_001113492,NM_001113492,NM_001113493,NM_001113493,NM_001113494,NM_001113494,NM_001113495,NM_001113495,NM_001113496,NM_001113496,NM_001293695,NM_001293695,NM_001293696,NM_001293696,NM_001293697,NM_001293697,NM_001293698,NM_001293698,NM_006640,NM_006640	241,241,77,77,234,234,77,77,129,129,-10,-10,222,222,17,17,-10,-10,-10,-10,223,223	4,4,4,4,3,3,3,3,2,2,2,2,3,3,2,2,2,2,2,2,3,3	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	722,722,230,230,701,701,230,230,386,386,,,665,665,50,50,,,,,668,668	1761,1761,1269,1269,1740,1740,1269,1269,1425,1425,1008,1008,1704,1704,1089,1089,1008,1008,1008,1008,1707,1707	63,63,63,63,63,63,63,63,63,63,66,66,63,63,63,63,66,66,66,66,63,63	189,189,189,189,189,189,189,189,189,189,198,198,189,189,189,189,198,198,198,198,189,189	VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR	GPSM1:NM_001145638[1,9]-SEPT9:NM_001113491[4,12];GPSM1:NM_015597[1,9]-SEPT9:NM_001113491[4,12];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113492[4,12];GPSM1:NM_015597[1,9]-SEPT9:NM_001113492[4,12];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113493[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_001113493[3,11];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113494[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_001113494[3,11];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113495[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001113495[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113496[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001113496[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293695[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_001293695[3,11];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293696[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001293696[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293697[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001293697[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293698[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001293698[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_006640[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_006640[3,11]		geneB_transcripts=NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640;geneb_utr_codons=11	,,,,,,,,,,ATE,ATE,,,,,ATE,ATE,ATE,ATE,,	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
	StJude_Sample	BMP2K	chr4	79800045	+	coding	BMPR1B	chr4	96025559	+	coding	>	0	1	54	160	0.000	0.000	1	53	0.000	0.036	54	54	CTAAGTTAACAGAAGAGGAACTATTGGACAGAGAATTTGACCTTCTAAGATCAACAAACTTCCTTGATAACATGCTTTTGCGAAGTGCAGGAAAATTAAATGTGGGCACCAAGAAAGAGGATGGTGAGAGTACAGCCCCCACCCCCCGTCCAAAGGTCTTGCGTTGTAAATGCCACCACCATTGTCCAGAAGACTCAGTCAACAATATTTGCAGC	DEL	26.80	LQ	2	Fusion	1,1,1,1,1,1,1,1	NM_017593,NM_198892,NM_017593,NM_198892,NM_017593,NM_198892,NM_017593,NM_198892	651,651,651,651,651,651,651,651	14,14,14,14,14,14,14,14	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	1951,1951,1951,1951,1951,1951,1951,1951		16,16,16,16,16,16,16,16	52,52,52,52,52,52,52,52	NM_001203,NM_001203,NM_001256792,NM_001256792,NM_001256793,NM_001256793,NM_001256794,NM_001256794	-5,-5,-5,-5,25,25,-5,-5	4,4,2,2,2,2,2,2	tuple,tuple,tuple,tuple,blat,blat,tuple,tuple	,,,,74,74,,	1509,1509,1509,1509,1599,1599,1509,1509	20,20,20,20,18,18,20,20	62,62,62,62,56,56,62,62	KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS	BMP2K:NM_017593[1,14]-BMPR1B:NM_001203[4,13];BMP2K:NM_198892[1,14]-BMPR1B:NM_001203[4,13];BMP2K:NM_017593[1,14]-BMPR1B:NM_001256792[2,11];BMP2K:NM_198892[1,14]-BMPR1B:NM_001256792[2,11];BMP2K:NM_017593[1,14]-BMPR1B:NM_001256793[2,11];BMP2K:NM_198892[1,14]-BMPR1B:NM_001256793[2,11];BMP2K:NM_017593[1,14]-BMPR1B:NM_001256794[2,11];BMP2K:NM_198892[1,14]-BMPR1B:NM_001256794[2,11]		geneB_transcripts=NM_001203,NM_001256792,NM_001256793,NM_001256794;geneb_utr_codons=6	TNF,TNF,TNF,TNF,T,T,TNF,TNF	2,2,2,2,2,2,2,2
	StJude_Sample	FUS	chr16	31191548	+	coding	CXCR4	chr2	136873483	-	coding	>	4	4	57	60	0.000	0.000	28	153	0.004	0.025	57	56	GTTGGAACTTCGTTGCTTGCTTGCCTGTGCGCGCGTGCGCGGACATGGCCTCAAACGATATACACTTCAGATAACTACACCGAGGAAATGGGCTCAGGGGACTATGACTCCATGAA	CTX	21.52	LQ	3	Fusion	0,0,0,0,0,0,0,0	NM_001170634,NM_001170937,NM_004960,NM_001170634,NM_001170937,NM_004960,,	,,,,,,,	1,1,1,1,1,1,,	,,,,,,,	13,13,13,13,13,13,,		,,,,,,,	,,,,,,,	NM_001008540,NM_001008540,NM_001008540,NM_003467,NM_003467,NM_003467,NM_001008540,NM_003467	9,9,9,6,6,6,9,6	1,1,1,2,2,2,,	blat,blat,blat,tuple,tuple,tuple,blat,tuple	27,27,27,16,16,16,27,16	1071,1071,1071,1059,1059,1059,1071,1059	19,19,19,19,19,19,,	,,,,,,,	VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,,	FUS:NM_001170634[1,1]-CXCR4:NM_001008540[1,1];FUS:NM_001170937[1,1]-CXCR4:NM_001008540[1,1];FUS:NM_004960[1,1]-CXCR4:NM_001008540[1,1];FUS:NM_001170634[1,1]-CXCR4:NM_003467[2,2];FUS:NM_001170937[1,1]-CXCR4:NM_003467[2,2];FUS:NM_004960[1,1]-CXCR4:NM_003467[2,2];;		geneB_transcripts=NM_001008540,NM_003467	,,,,,,,	0,0,0,0,0,0,,
	StJude_Sample	TTYH3	chr7	2671914	+	coding	SKI	chr1	2234413	+	coding	>	4	0	81	47	0.000	0.000	74	0	0.077	0.000	82	77	TGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCCCTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAGGTCTCCTCTGAGCCTCCGGCCTCCATAAGACCCAAAACAGATG	CTX	17.19	LQ	2	Fusion	1	NM_025250	42	1	tuple	123		25	79	NM_003036	324	2	tuple	970	2187	26	80	HRLPHFDLSWEAPSSQFRPEDTDYQQVSSEPPASIRPKTD	TTYH3:NM_025250[1,1]-SKI:NM_003036[2,7]		geneB_transcripts=NM_003036		2
	StJude_Sample	FNBP1	chr9	132805231	-	coding	CXCR4	chr2	136873483	-	coding	>	0	7	54	82	0.000	0.000	0	120	0.030	0.025	54	54	CGCGGAGCGCCCCTTCGCGTCCCCTGCACCATGAGCTGGGGCACCGAGCTCTGGATATACACTTAAGATAACTACACCGAGGAAATGGGCTCAGGGGACTATGACTCCATGAAGGAACCCTGTTTCCGTGAAGAAA	CTX	16.88	LQ	3	Fusion	0,0,3,3	NM_015033,NM_015033,,	,,,	1,1,,	,,,	24,24,,		,,,	,,,	NM_001008540,NM_003467,NM_001008540,NM_003467	9,6,9,6	1,2,,	blat,blat,blat,blat	27,16,27,16	1071,1059,1071,1059	21,21,,	,,,	RGAPLRVPCTMSWGTELWIYT*DNYTEEMGSGDYDSMKEPCFREE,RGAPLRVPCTMSWGTELWIYT*DNYTEEMGSGDYDSMKEPCFREE,,	FNBP1:NM_015033[1,1]-CXCR4:NM_001008540[1,1];FNBP1:NM_015033[1,1]-CXCR4:NM_003467[2,2];;		geneB_transcripts=NM_001008540,NM_003467	,,,	0,0,,
	StJude_Sample	TFEB	chr6	41703086	-	5utr	CCND3	chr6	41908322	-	coding	>	2	3	95	61	0.000	0.076	91	40	0.027	0.012	96	96	GCGGGCACAGCTTGCGGGCCAGGCACCCGAACTTGCGACAAGTTGCCGGAGCCGCGGGGCGCGGGCGGCGGACAGATTGACCTTCAGAGCGAGGTATGTGAGGAGCAGCGCTGTGAGGAGGAAGTCTTCCCCCTGGCCATGAACTACCTGGATCGATA	INS	13.72	LQ	3	NLoss	0,0,0,0,0,0,0,0,0,0,0,0	NM_001167827,NM_001271943,NM_001271944,NM_001167827,NM_001271943,NM_001271944,NM_001167827,NM_001271943,NM_001271944,,,	,,,,,,,,,,,	1,1,1,1,1,1,1,1,1,,,	,,,,,,,,,,,	20,,,20,,,20,,,,,		,,,,,,,,,,,	,,,,,,,,,,,	NM_001136017,NM_001136017,NM_001136017,NM_001287427,NM_001287427,NM_001287427,NM_001760,NM_001760,NM_001760,NM_001136017,NM_001287427,NM_001760	-14,-14,-14,17,17,17,67,67,67,-14,17,67	2,2,2,2,2,2,2,2,2,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,50,50,50,200,200,200,,50,200	636,636,636,729,729,729,879,879,879,636,729,879	34,34,34,31,31,31,31,31,31,,,	,,,,,,,,,,,	AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,,,	TFEB:NM_001167827[1,1]-CCND3:NM_001136017[2,5];TFEB:NM_001271943[1,1]-CCND3:NM_001136017[2,5];TFEB:NM_001271944[1,1]-CCND3:NM_001136017[2,5];TFEB:NM_001167827[1,1]-CCND3:NM_001287427[2,5];TFEB:NM_001271943[1,1]-CCND3:NM_001287427[2,5];TFEB:NM_001271944[1,1]-CCND3:NM_001287427[2,5];TFEB:NM_001167827[1,1]-CCND3:NM_001760[2,5];TFEB:NM_001271943[1,1]-CCND3:NM_001760[2,5];TFEB:NM_001271944[1,1]-CCND3:NM_001760[2,5];;;	geneB_breakpoint_not_mapped_to_CDS=NM_001136125;geneB_breakpoint_not_mapped_to_CDS=NM_001136126;geneB_breakpoint_not_mapped_to_CDS=NM_001287434	geneB_transcripts=NM_001136017,NM_001136125,NM_001136126,NM_001287427,NM_001287434,NM_001760;geneb_utr_codons=13;geneB_intronic=NM_001136125;geneB_intronic=NM_001136126;geneB_intronic=NM_001287434	,,,,,,,,,,,	0,0,0,0,0,0,0,0,0,,,
	StJude_Sample	CUX1	chr7	101882864	+	coding	GOLGA4	chr3	37396590	+	coding	>	0	2	52	94	0.480	0.000	1	66	0.000	0.045	52	50	CCCAGCTCAACCTGAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGACCATGGCAAAAGTTATAACCACCGTACTGAAGTTCCCTGATGATCAGACTCAGAAAATTTTGGAAAGAGAAGATGCTCGGCTGATGTTTAC	CTX	11.42	LQ	3	Fusion	0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3	NM_001202543,NM_001202544,NM_001202545,NM_001202546,NM_001913,NM_181500,NM_181552,NM_001202543,NM_001202544,NM_001202545,NM_001202546,NM_001913,NM_181500,NM_181552,,	,,,,,,,,,,,,,,,	23,13,13,13,14,14,23,23,13,13,13,14,14,23,,	,,,,,,,,,,,,,,,	3920,,,,,,3887,3920,,,,,,3887,,		,,,,,,,,,,,,,,,	,,,,,,,,,,,,,,,	NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_002078,NM_002078,NM_002078,NM_002078,NM_002078,NM_002078,NM_002078,NM_001172713,NM_002078	2208,2208,2208,2208,2208,2208,2208,2193,2193,2193,2193,2193,2193,2193,2208,2193	22,22,22,22,22,22,22,22,22,22,22,22,22,22,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	6622,6622,6622,6622,6622,6622,6622,6577,6577,6577,6577,6577,6577,6577,6622,6577	6732,6732,6732,6732,6732,6732,6732,6693,6693,6693,6693,6693,6693,6693,6732,6693	17,17,17,17,17,17,17,17,17,17,17,17,17,17,,	,,,,,,,,,,,,,,,	PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,,	CUX1:NM_001202543[1,23]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202544[1,13]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202545[1,13]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202546[1,13]-GOLGA4:NM_001172713[22,23];CUX1:NM_001913[1,14]-GOLGA4:NM_001172713[22,23];CUX1:NM_181500[1,14]-GOLGA4:NM_001172713[22,23];CUX1:NM_181552[1,23]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202543[1,23]-GOLGA4:NM_002078[22,24];CUX1:NM_001202544[1,13]-GOLGA4:NM_002078[22,24];CUX1:NM_001202545[1,13]-GOLGA4:NM_002078[22,24];CUX1:NM_001202546[1,13]-GOLGA4:NM_002078[22,24];CUX1:NM_001913[1,14]-GOLGA4:NM_002078[22,24];CUX1:NM_181500[1,14]-GOLGA4:NM_002078[22,24];CUX1:NM_181552[1,23]-GOLGA4:NM_002078[22,24];;		geneB_transcripts=NM_001172713,NM_002078	,,,,,,,,,,,,,,,	1,1,1,1,1,1,1,1,1,1,1,1,1,1,,
	StJude_Sample	ERICH1-AS1	chr8	687825	+	5utr	HMGB1	chr13	31037833	-	5utr	>	3	1	77	61	0.000	0.947	91	7	0.159	0.023	78	76	CTGAGGAGGGGCCGCTTCGCCATGTCGCCCCGCACCTGCTGAGCCCGGAGCGTCCGAGGATGTCCGCGCTGAGGAAGAAAAATAACTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCA	CTX	11.20	LQ	0	upTSS	2									NM_002128	-4		tuple		648					geneA_no_transcript_IDs_found	geneB_transcripts=NM_002128;geneb_utr_codons=5		
	StJude_Sample	AKAP8	chr19	15490523	-	coding	TCF12	chr15	57212088	+	5utr	>	2	0	84	136	0.000	0.000	64	0	0.019	0.019	85	82	CGCTGAACGCATGCGTGCTGTGGTCGCCTAGTAAACGGGGCTGCTGGTGGGCCGCGTCGAAGACATGGACCAGGGCTACGGAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGAC	CTX	9.04	LQ	2	upTSS	0,0,0,0,2,2,2,2	NM_005858,NM_005858,NM_005858,NM_005858,,,,	,,,,,,,	1,1,1,1,,,,	,,,,,,,	19,19,19,19,,,,		,,,,,,,	,,,,,,,	NM_003205,NM_207036,NM_207037,NM_207038,NM_003205,NM_207036,NM_207037,NM_207038	-7,-3,-7,-3,-7,-3,-7,-3	2,2,2,2,,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,	2049,2121,2121,2049,2049,2121,2121,2049	30,34,30,34,,,,	,,,,,,,	R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,,,,	AKAP8:NM_005858[1,1]-TCF12:NM_003205[2,20];AKAP8:NM_005858[1,1]-TCF12:NM_207036[2,21];AKAP8:NM_005858[1,1]-TCF12:NM_207037[2,21];AKAP8:NM_005858[1,1]-TCF12:NM_207038[2,20];;;;		geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038;geneb_utr_codons=8;geneb_utr_codons=4	,,,,,,,	0,0,0,0,,,,
	StJude_Sample	ECHDC3	chr10	11797608	+	coding	ARHGAP24	chr4	86491673	+	5utr	>	2	3	90	46	0.000	0.000	54	70	0.125	0.000	91	88	ACAAGTCCTCTTTTGCCACTCCTGGGGTGAACGTCGGGCTCTTCTGTTCTACCCCTGGGGTTGCCTTGGCAAGAGCAGTGCCTAGAAAGGAAAGTCCATCAGCTTGATAATGGAGGAGAACAATGACTCCACG	CTX	7.31	LQ	0	CLoss	0,0	NM_024693,	,	4,	,	,		,	,	NM_001025616,NM_001025616	-6,-6	2,	tuple,tuple	,	2247,2247	32,	,	QVLFCHSWGERRALLFYPWGCLGKSSA*KGKSISLIMEENNDST,	ECHDC3:NM_024693[1,4]-ARHGAP24:NM_001025616[2,10];		geneB_transcripts=NM_001025616;geneb_utr_codons=7	,	1,
	StJude_Sample	CASD1	chr7	94164835	+	coding	SND1	chr7	127731889	+	coding	>	1	0	95	49	0.000	0.000	50	1	0.022	0.000	96	96	ATGTTAAGATGTTCAGTGTTTCCAAATTAATTGCTCAAGAAACCATCATGGAATCTTTGGATGGCTTACATCTTCCTGAATCGAGCAGAGAAACTATCACAGAATACCTGAATACCCAAGAGTCAGCCAAGAGCGCCAGGCTGAA	DEL	6.39	LQ	2	Fusion	1	NM_022900	282	8	perfect	843		30	94	NM_014390	875	23	blat	2623	2733	31	95	VKMFSVSKLIAQETIMESLDGLHLPESSRETITEYLNTQESAKSARL	CASD1:NM_022900[1,8]-SND1:NM_014390[23,24]		geneB_transcripts=NM_014390		2
	StJude_Sample	NIN	chr14	51288594	-	coding	KLC1	chr14	104120900	+	coding	>	0	1	171	103	0.006	0.000	0	47	0.015	0.018	171	171	GGAGCAGGACCAGCATGAGGCCCGACTCAAGGAGCTGTTTGACAGTTTTGACACGACGGGCACAGGGTCCCTGGGGCAGGAGGAACTCACCGACCTTTGCCACATGTTGAGCTTGGAGGAGGTGGCCCCAGTGCTGCAGCAGACATTACTTCAGGACAACCTCTTGGGCAGGAATGTATGACAACATGTCCACAATGGTGTACATAAAGGAAGACAAGTTGGAGAAGCTTACACAGGATGAAATTATTTCTAAGACAAAGCAAGTAATTCAGGG	ITX	5.50	LQ	3	upTSS	0,0,0,0,0,0,0,0,0,0,0,0,2,2,2	NM_016350,NM_020921,NM_182944,NM_182946,NM_016350,NM_020921,NM_182944,NM_182946,NM_016350,NM_020921,NM_182944,NM_182946,,,	,,,,,,,,,,,,,,	3,3,3,3,3,3,3,3,3,3,3,3,,,	,,,,,,,,,,,,,,	181,,,,181,,,,181,,,,,,		,,,,,,,,,,,,,,	,,,,,,,,,,,,,,	NM_001130107,NM_001130107,NM_001130107,NM_001130107,NM_005552,NM_005552,NM_005552,NM_005552,NM_182923,NM_182923,NM_182923,NM_182923,NM_001130107,NM_005552,NM_182923	0,0,0,0,0,0,0,0,0,0,0,0,0,0,0	2,2,2,2,2,2,2,2,2,2,2,2,,,	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,,,,,,,,,,,,,,	1857,1857,1857,1857,1683,1683,1683,1683,1722,1722,1722,1722,1857,1683,1722	57,57,57,57,57,57,57,57,57,57,57,57,,,	,,,,,,,,,,,,,,	SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,,,	NIN:NM_016350[1,3]-KLC1:NM_001130107[2,16];NIN:NM_020921[1,3]-KLC1:NM_001130107[2,16];NIN:NM_182944[1,3]-KLC1:NM_001130107[2,16];NIN:NM_182946[1,3]-KLC1:NM_001130107[2,16];NIN:NM_016350[1,3]-KLC1:NM_005552[2,15];NIN:NM_020921[1,3]-KLC1:NM_005552[2,15];NIN:NM_182944[1,3]-KLC1:NM_005552[2,15];NIN:NM_182946[1,3]-KLC1:NM_005552[2,15];NIN:NM_016350[1,3]-KLC1:NM_182923[2,15];NIN:NM_020921[1,3]-KLC1:NM_182923[2,15];NIN:NM_182944[1,3]-KLC1:NM_182923[2,15];NIN:NM_182946[1,3]-KLC1:NM_182923[2,15];;;		geneB_transcripts=NM_001130107,NM_005552,NM_182923;geneb_utr_codons=1	,,,,,,,,,,,,,,	2,2,2,2,2,2,2,2,2,2,2,2,,,
	StJude_Sample	GNA12	chr7	2834562	-	coding	AFF3	chr2	100203737	-	coding	>	1	0	217	101	0.005	0.000	50	0	0.017	0.000	254	257	GGACCGCGCGCCGCTCGCGGGCCAGCAGCGCGTCACGGGCTCAAGGGTTCTTGTTGATGCACGAGATAAGCTTGGCATTCCTTGGCAGTATTCTGAAAATGAGAAGCATGGGATGTTCCTGATGGCCTTCGAGAACAAGGCGGGGCTGCCTGTGGAGCCGGCCACCTTCCAGCTGTACGTCCCGGCCCTGAGCGCACTCTGGAGGGATTCTGGCATCAGGGAGGCTTTCAGCCGGAGAAGCGAGTTTCAGCTGGGGGACAACGAAGACGACTACAGGGAGATCAAGAAGTCCCAGGGAGAGAAAGACAGCTCTTCAAGACTGGCCACCTCCACCAGTAATACTTTGTCTGCAAACCA	CTX	5.37	LQ	2	Fusion	1,1,1,1,1,1	NM_001282441,NM_001293092,NM_007353,NM_001282441,NM_001293092,NM_007353	118,176,177,118,176,177	3,2,2,3,2,2	tuple,tuple,tuple,tuple,tuple,tuple	348,525,525,348,525,525		84,83,84,84,83,84	255,252,255,255,252,255	NM_001025108,NM_001025108,NM_001025108,NM_002285,NM_002285,NM_002285	849,849,849,824,824,824	15,15,15,15,15,15	tuple,tuple,tuple,tuple,tuple,tuple	,,,,,	,,,,,	85,85,85,85,85,85	256,256,256,256,256,256	DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN	GNA12:NM_001282441[1,3]-AFF3:NM_001025108[15,24];GNA12:NM_001293092[1,2]-AFF3:NM_001025108[15,24];GNA12:NM_007353[1,2]-AFF3:NM_001025108[15,24];GNA12:NM_001282441[1,3]-AFF3:NM_002285[15,24];GNA12:NM_001293092[1,2]-AFF3:NM_002285[15,24];GNA12:NM_007353[1,2]-AFF3:NM_002285[15,24]	geneB_CDS_mapping_exception=NM_001025108:-2;geneB_CDS_mapping_exception=NM_002285:-2	geneB_transcripts=NM_001025108,NM_002285	,G,,,G,	1,1,1,1,1,1
	StJude_Sample	USP10	chr16	84733718	+	coding	DYRK1A	chr21	38877584	+	coding	>	0	1	104	92	0.665	0.011	0	45	0.010	0.025	137	134	CACACAGGCTGTGGATAAACTACCTGATGGGGTTGTGCGGGCGAGAAGATGGCGGCGGCGGGGGAAGCAGCGTGAGCAGCCGGAGGATCGCGGAGTCCCAATGAAACGGGCAGCCATGGCCCTCCACAGCCCGCAGGAGTACAAACCACCAGGAACCCGTAAACTTCATAACATTCTTGGAGTGGAAACAGGAGGACCTGGTGGGCGACGTGCTGGGGAGTCAGGTAGATCGGAAGAGCGTCGT	CTX	4.22	LQ	2	Fusion	1,1,1,1,1,1,1,1	NM_001272075,NM_005153,NM_001272075,NM_005153,NM_001272075,NM_005153,NM_001272075,NM_005153	56,52,56,52,56,52,56,52	1,1,1,1,1,1,1,1	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	,21,,21,,21,,21		9,9,9,9,9,9,9,9	30,30,30,30,30,30,30,30	NM_001396,NM_001396,NM_101395,NM_101395,NM_130436,NM_130436,NM_130438,NM_130438	414,414,414,414,405,405,414,414	9,9,11,11,9,9,9,9	tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple	1240,1240,1240,1240,1213,1213,1240,1240	2292,2292,1755,1755,2265,2265,1590,1590	45,45,45,45,45,45,45,45	136,136,136,136,136,136,136,136	TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR	USP10:NM_001272075[1,1]-DYRK1A:NM_001396[9,11];USP10:NM_005153[1,1]-DYRK1A:NM_001396[9,11];USP10:NM_001272075[1,1]-DYRK1A:NM_101395[11,13];USP10:NM_005153[1,1]-DYRK1A:NM_101395[11,13];USP10:NM_001272075[1,1]-DYRK1A:NM_130436[9,11];USP10:NM_005153[1,1]-DYRK1A:NM_130436[9,11];USP10:NM_001272075[1,1]-DYRK1A:NM_130438[9,10];USP10:NM_005153[1,1]-DYRK1A:NM_130438[9,10]		geneB_transcripts=NM_001396,NM_101395,NM_130436,NM_130438	VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ	1,1,1,1,1,1,1,1
	StJude_Sample	ZFP41	chr8	144337292	+	intron	CXCR4	chr2	136873486	-	coding	>	1	3	131	47	0.000	0.598	43	51	0.154	0.000	143	139	GCCCAGCATTCAGGGCCAATAGGACGGATTCCCAGGTGTGGATTGACATCTCACCAAATGCCAGCCCCAGGTCATGCCCACAGAGACGCCTGCAGCAGCGCATGGCTGGCAGGACCACCTCAGCCTCTCTAGCAGCAGGCAGATATACACTTCAGATAACTACACCGAGGAAATGGGCTCAGGGG	CTX	3.85	LQ	2	NLoss	0,0,3,3	NM_173832,NM_173832,,	,,,	2,2,,	,,,	,,,		,,,	,,,	NM_001008540,NM_003467,NM_001008540,NM_003467	8,6,8,6	1,2,,	blat,tuple,blat,tuple	24,16,24,16	1071,1059,1071,1059	46,47,,	,,,	PSIQGQ*DGFPGVD*HLTKCQPQVMPTETPAAAHGWQDHLSLSSSRQIYTSDNYTEEMGSG,PSIQGQ*DGFPGVD*HLTKCQPQVMPTETPAAAHGWQDHLSLSSSRQIYTSDNYTEEMGSG,,	ZFP41:NM_173832[1,2]-CXCR4:NM_001008540[1,1];ZFP41:NM_173832[1,2]-CXCR4:NM_003467[2,2];;		geneB_transcripts=NM_001008540,NM_003467	,,,	1,1,,
`

runproteinpaint({
  	host: 'https://proteinpaint.stjude.org',
	holder:document.getElementById('aaa'),
	genome:'hg19',
	fusioneditor:{
		input:rawtext,
		dataname:'cicero test'
	}
})

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