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St. Jude Cloud-a Pediatric Cancer Genomic Data Sharing Ecosystem 4 Visualizations

St. Jude Children's Research Hospital
4
13.7K

Visualizations accompanying the first St. Jude Cloud manuscript (https://pubmed.ncbi.nlm.nih.gov/33408242/). Below, you can explore the expression landscape for all RNA-Seq samples in St. Jude Cloud or broken down by tumor category (blood tumors, brain tumors, and solid tumors).

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Needs Review: Clay McLeod has requested your review for `Pediatric blood, solid, and brain tumor RNA-Seq t-SNE plot (1,574 samples)`
Cancer Discovery
RNA Sequencing
hg38 / GRCh38
Pediatric blood, solid, and brain tumor RNA-Seq t-SNE plot (1,574 samples)
Jan 7, 2021
0
12.1K
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The expression landscape of 1,574 RNA-Seq fresh frozen tumor samples in St. Jude Cloud is displayed via a t-SNE plot generated using the St. Jude Cloud RNA-Seq Expression Classification analysis workflow. Visualization representative of Figure 4f of McLeod et...

St. Jude Children's Research Hospital

 
Draft
Waiting for Review
Revision Requested
Approved - edits can only be made to update the visibility. Cannot change visibility after setting to public.
Needs Review: Clay McLeod has requested your review for `Pediatric blood cancer RNA-Seq t-SNE plot (816 samples)`
Cancer Discovery
RNA Sequencing
hg38 / GRCh38
Pediatric blood cancer RNA-Seq t-SNE plot (816 samples)
Jan 7, 2021
0
12.1K
0
PUBLIC
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The expression landscape of 816 RNA-Seq fresh frozen blood cancer samples in St. Jude Cloud is displayed via a t-SNE plot generated using the St. Jude Cloud RNA-Seq Expression Classification analysis workflow. Visualization representative of Figure 4a of McLeo...

St. Jude Children's Research Hospital

 
Draft
Waiting for Review
Revision Requested
Approved - edits can only be made to update the visibility. Cannot change visibility after setting to public.
Needs Review: Clay McLeod has requested your review for `Pediatric brain tumor RNA-Seq t-SNE plot (447 samples)`
Cancer Discovery
RNA Sequencing
hg38 / GRCh38
Pediatric brain tumor RNA-Seq t-SNE plot (447 samples)
Jan 7, 2021
0
11.9K
0
PUBLIC
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The expression landscape of 447 RNA-Seq fresh frozen brain tumor samples in St. Jude Cloud is displayed via a t-SNE plot generated using the St. Jude Cloud RNA-Seq Expression Classification analysis workflow. Diagnosis subtypes are denoted by color as per the...

St. Jude Children's Research Hospital

 
Draft
Waiting for Review
Revision Requested
Approved - edits can only be made to update the visibility. Cannot change visibility after setting to public.
Needs Review: Clay McLeod has requested your review for `Pediatric solid tumor RNA-Seq t-SNE plot (302 samples)`
Cancer Discovery
RNA Sequencing
hg38 / GRCh38
Pediatric solid tumor RNA-Seq t-SNE plot (302 samples)
Jan 7, 2021
0
11.7K
0
PUBLIC
View Publication

The expression landscape of 302 RNA-Seq fresh frozen solid tumor samples in St. Jude Cloud is displayed via a t-SNE plot generated using the St. Jude Cloud RNA-Seq Expression Classification analysis workflow. Diagnosis subtypes are denoted by color as per the...

St. Jude Children's Research Hospital

 
Visualization Released Stats
Pediatric blood, solid, and brain tumor RNA-Seq t-SNE plot (1,574 samples)
RNA Sequencing
hg38 / GRCh38
Jun 25, 2022
0
12.1K
0
Pediatric blood cancer RNA-Seq t-SNE plot (816 samples)
RNA Sequencing
hg38 / GRCh38
Jun 25, 2022
0
12.1K
0
Pediatric brain tumor RNA-Seq t-SNE plot (447 samples)
RNA Sequencing
hg38 / GRCh38
Jun 25, 2022
0
11.9K
0
Pediatric solid tumor RNA-Seq t-SNE plot (302 samples)
RNA Sequencing
hg38 / GRCh38
Jun 25, 2022
0
11.7K
0
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