Human Tumor Atlas Network Consortium
The visualizer here houses single-cell/nucleus transcriptomic data generated from the Human Tumor Atlas Pilot Project neuroblastoma workgroup. Tissue from 55 neuroblastoma tumors were were obtained from either Dana Farber Cancer Institute or St. Jude Children’s Research Hospital. The samples underwent processing using protocols described in Slyper et al, Nat Med 2020. The integrated dataset browser allows a user to browse through the combined across all of processed samples. To see individual samples, please click on the single-sample dataset corresponding to the dataset of interest. For questions, please contact Dr. Anand Patel at anand.patel2@stjude.org.
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The data presented in this website were generated as part of a multi-institutional collaboration between St. Jude Children's Research Hospital, Dana Farber Cancer Institute and Broad Institute of MIT and Harvard. A patient cohort of 55 neuroblastoma samples we...
Dyer Lab
Sample name: HTAPP-100-SMP-1 Processing method: single-nucleus RNA-seq (frozen tissue) Biopsy or resection: resection Age: 3 yr Sample site (anatomic site of tissue resection): Adrenal Gland, Right Primary site: Adrenal Histologic diagnosis Ganglioneuroblasto...
Dyer Lab
Sample name: HTAPP-102-SMP-11 Processing method: single-nucleus RNA-seq (frozen tissue) Biopsy or resection: resection Age: 10 mo Sample site (anatomic site of tissue resection): Liver Primary site: Adrenal Histologic diagnosis Neuroblastoma INSS Stage: 3 INR...
Dyer Lab
Sample name: HTAPP-114-SMP-21 Processing method: single-nucleus RNA-seq (frozen tissue) Biopsy or resection: resection Age: 17 mo Sample site (anatomic site of tissue resection): Adrenal Gland, Right Primary site: Adrenal Histologic diagnosis Neuroblastoma IN...
Dyer Lab
Sample name: HTAPP-166-SMP-201 Processing method: single-cell RNA-seq (fresh tissue) Biopsy or resection: resection Age: 5 yr Sample site (anatomic site of tissue resection): Retrohepatic, perivascular mass, IVC Primary site: Adrenal Histologic diagnosis Gang...
Dyer Lab
Sample name: HTAPP-116-SMP-31 Processing method: single-nucleus RNA-seq (frozen tissue) Biopsy or resection: resection Age: 15 mo Sample site (anatomic site of tissue resection): Mass, Retroperitoneal Primary site: Adrenal Histologic diagnosis Neuroblastoma I...
Dyer Lab
Sample name: HTAPP-120-SMP-41 Processing method: single-nucleus RNA-seq (frozen tissue) Biopsy or resection: resection Age: 11 mo Sample site (anatomic site of tissue resection): Paraspinal Mass/mediastinal mass Primary site: Paraspinal Mass Histologic diagno...
Dyer Lab
Sample name: HTAPP-123-SMP-51 Processing method: single-nucleus RNA-seq (frozen tissue) Biopsy or resection: resection Age: 13 mo Sample site (anatomic site of tissue resection): Adrenal Gland, Right Primary site: Adrenal Histologic diagnosis Neuroblastoma IN...
Dyer Lab
Sample name: HTAPP-124-SMP-61 Processing method: single-nucleus RNA-seq (frozen tissue) Biopsy or resection: resection Age: 16 mo Sample site (anatomic site of tissue resection): Adrenal Gland Primary site: Adrenal Histologic diagnosis Neuroblastoma INSS Stag...
Dyer Lab