Visualizations

This HiC data combines chromatin localization frequency and RefSeq gene models for a pediatric neuroblastoma cell line SH-SY5Y. The hg19 genome location is navigable. The intensity of red is proportional to the frequency of association between sites. This demo...

This HiC data combines chromatin localization frequency and RefSeq gene models for a standard reference pediatric neuroblastoma cell line SKNAS. The hg19 genome location is navigable. The intensity of red is proportional to the frequency of association between...

This HiC data combines chromatin localization frequency and RefSeq gene models for a pediatric neuroblastoma line NB69. The hg19 genome location is navigable. The intensity of red is proportional to the frequency of association between sites. This demonstratio...

Relapse of acute lymphoblastic leukemia (ALL) remains a leading cause of childhood cancer-related death. Prior studies have shown clonal mutations at relapse often arise from relapse-fated subclones that exist at diagnosis. However, the genomic landscape, evol...

Relapse of acute lymphoblastic leukemia (ALL) remains a leading cause of childhood cancer-related death. Prior studies have shown clonal mutations at relapse often arise from relapse-fated subclones that exist at diagnosis. However, the genomic landscape, evol...

Rare CNS Embryonal Tumor TSNE plot: This interactive plot graphically visualizes tumor methylomic data by displaying results as coordinates. Tumors of a similar molecular makeup group together as “clusters”, allowing users to see how individual cases compare...

Rare CNS Embryonal Tumors portal: This visualization serves as an adjunct to the St Jude Children's Research Hospital study on Rare CNS Embryonal Tumors and as a resource for the oncology community to explore. Funding was provided by American Lebanese Syrian...

Here we demonstrate NetAD data integrated with GenomePaint. Tracks from various Alzheimer's Disease (AD) and reference tracks are displayed, showing the peptide sequence. To navigate to a gene of your choice enter the gene name or chromosomal coordinates in th...

Here we demonstrate NetAD data integrated with ProteinPaint. Phosphorylation sites common in Alzheimer's Disease (AD) are displayed on the peptide sequence of MAPT, also known as the Tau protein. The log2 ratio of phosphoryation in AD cases versus references s...